CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 160

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6160Q160RQ3729RnonsyncAacGa20206202040.99990111450-11452
ORF1ab/nsp6160Q160RQ3729RnonsynCAaAGa2020610.000049490211450-11452
ORF1ab/nsp6160Q160RQ3729RnonsyncAAcGC2020610.000049490211450-11452
ORF1ab/nsp6160Q160KQ3729KnonsynCaaAaa31573157111450-11452
ORF1ab/nsp6160Q160QQ3729QsyncaAcaG8585111450-11452
ORF1ab/nsp6160Q160XQ3729XnonsynCaaTaa3636111450-11452
ORF1ab/nsp6160Q160delQ3729deldelCAA---2929111450-11452
ORF1ab/nsp6160Q160HQ3729HnonsyncaAcaC26230.88461511450-11452
ORF1ab/nsp6160Q160HQ3729HnonsyncaAcaT2630.11538511450-11452
ORF1ab/nsp6160Q160LQ3729LnonsyncAacTa55111450-11452
ORF1ab/nsp6160Q160DQ3729DnonsynCaAGaT420.511450-11452
ORF1ab/nsp6160Q160DQ3729DnonsynCaAGaC420.511450-11452
ORF1ab/nsp6160Q160NQ3729NnonsynCaAAaC33111450-11452
ORF1ab/nsp6160Q160EQ3729EnonsynCaaGaa33111450-11452
ORF1ab/nsp6160Q160del1Q3729del1delcAac-a22111450-11452
ORF1ab/nsp6160Q160PQ3729PnonsyncAacCa22111450-11452
ORF1ab/nsp6160Q160del2Q3729del2delcAAc--11111450-11452

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6160Q160RcAacGa2020420206All0.003864
ORF1ab/nsp6160Q160RCAaAGa120206All0
ORF1ab/nsp6160Q160RcAAcGC120206All0
ORF1ab/nsp6160Q160RcAacGa1100511006B.1.6210.974152
ORF1ab/nsp6160Q160RCAaAGa111006B.1.6210.000089
ORF1ab/nsp6160Q160RcAacGa52045204B.1.5960.453468
ORF1ab/nsp6160Q160KCaaAaa31573157All0.000604
ORF1ab/nsp6160Q160KCaaAaa20992099AY.40.003267
ORF1ab/nsp6160Q160RcAacGa19631963B.1.621.10.992919
ORF1ab/nsp6160Q160RcAacGa987987B.1.1.4200.992958
ORF1ab/nsp6160Q160KCaaAaa384384B.1.10.006966
ORF1ab/nsp6160Q160RcAacGa276276B.10.002528
ORF1ab/nsp6160Q160KCaaAaa262262P.40.996198
ORF1ab/nsp6160Q160RcAacGa173173AT.10.887179
ORF1ab/nsp6160Q160RcAacGa167167B.1.20.00147
ORF1ab/nsp6160Q160RcAacGa102102B.1.5490.733813
ORF1ab/nsp6160Q160RcAacGa9797B.1.10.00176
ORF1ab/nsp6160Q160QcaAcaG8585All0.000016
ORF1ab/nsp6160Q160KCaaAaa5959B.1.36.160.084046
ORF1ab/nsp6160Q160KCaaAaa5858P.50.794521
ORF1ab/nsp6160Q160KCaaAaa5454B.1.1.5220.931034
ORF1ab/nsp6160Q160KCaaAaa5050B.1.177.460.045914
ORF1ab/nsp6160Q160XCaaTaa3636All0.000007
ORF1ab/nsp6160Q160delCAA---2929All0.000006
ORF1ab/nsp6160Q160HcaAcaC2326All0.000004
ORF1ab/nsp6160Q160HcaAcaT326All0.000001
ORF1ab/nsp6160Q160KCaaAaa2525B.1.1.4190.185185
ORF1ab/nsp6160Q160KCaaAaa2424B.10.00022
ORF1ab/nsp6160Q160QcaAcaG2020B.1.3510.000595
ORF1ab/nsp6160Q160KCaaAaa1717B.1.617.20.000064
ORF1ab/nsp6160Q160QcaAcaG1616AY.410.004703
ORF1ab/nsp6160Q160RcAacGa1515B.1.6230.008047
ORF1ab/nsp6160Q160KCaaAaa1111AY.390.000272
ORF1ab/nsp6160Q160KCaaAaa1111AY.430.000049
ORF1ab/nsp6160Q160RcAacGa1010B.1.4290.000235
ORF1ab/nsp6160Q160RcAacGa99B0.00115
ORF1ab/nsp6160Q160RcAacGa99B.1.1.70.000008
ORF1ab/nsp6160Q160RcAacGa88AY.230.000558
ORF1ab/nsp6160Q160RcAacGa88AY.30.00008
ORF1ab/nsp6160Q160KCaaAaa88AY.850.003417
ORF1ab/nsp6160Q160KCaaAaa77AY.890.034314
ORF1ab/nsp6160Q160QcaAcaG77B.1.1.70.000006
ORF1ab/nsp6160Q160delCAA---77B.1.1.70.000006
ORF1ab/nsp6160Q160KCaaAaa77B.1.1770.000092
ORF1ab/nsp6160Q160RcAacGa77B.1.2580.000466
ORF1ab/nsp6160Q160RcAacGa66AY.390.000148
ORF1ab/nsp6160Q160RcAacGa66AY.430.000027
ORF1ab/nsp6160Q160RcAacGa66AY.440.000037
ORF1ab/nsp6160Q160XCaaTaa66B.10.000055
ORF1ab/nsp6160Q160XCaaTaa66B.1.1.70.000005
ORF1ab/nsp6160Q160QcaAcaG66B.1.617.20.000023
ORF1ab/nsp6160Q160RcAacGa66B.1.617.20.000023
ORF1ab/nsp6160Q160LcAacTa55All0.000001
ORF1ab/nsp6160Q160QcaAcaG55B.1.10.000091
ORF1ab/nsp6160Q160RcAacGa55B.1.177.730.002831
ORF1ab/nsp6160Q160RcAacGa55R.10.00045
ORF1ab/nsp6160Q160KCaaAaa440.222222
ORF1ab/nsp6160Q160HcaAcaC440.222222
ORF1ab/nsp6160Q160DCaAGaT24All0
ORF1ab/nsp6160Q160DCaAGaC24All0
ORF1ab/nsp6160Q160QcaAcaG44AY.250.000024
ORF1ab/nsp6160Q160RcAacGa44AY.250.000024
ORF1ab/nsp6160Q160KCaaAaa44B.1.1.2220.000816
ORF1ab/nsp6160Q160KCaaAaa44B.1.1.4480.00813
ORF1ab/nsp6160Q160RcAacGa44B.1.1.5150.08
ORF1ab/nsp6160Q160KCaaAaa44B.1.1600.000125
ORF1ab/nsp6160Q160RcAacGa44B.1.1770.000053
ORF1ab/nsp6160Q160RcAacGa44B.1.2210.000284
ORF1ab/nsp6160Q160RcAacGa44B.1.4270.000202
ORF1ab/nsp6160Q160RcAacGa44B.1.438.10.000429
ORF1ab/nsp6160Q160RcAacGa44B.1.5330.038462
ORF1ab/nsp6160Q160delCAA---44B.1.617.20.000015
ORF1ab/nsp6160Q160KCaaAaa44C.380.032258
ORF1ab/nsp6160Q160RcAacGa44N.60.028369
ORF1ab/nsp6160Q160QcaAcaG44P.10.000063
ORF1ab/nsp6160Q160NCaAAaC33All0.000001
ORF1ab/nsp6160Q160ECaaGaa33All0.000001
ORF1ab/nsp6160Q160KCaaAaa33AY.1050.001929
ORF1ab/nsp6160Q160KCaaAaa33AY.30.00003
ORF1ab/nsp6160Q160HcaAcaC33AY.30.00003
ORF1ab/nsp6160Q160delCAA---33AY.40.000005
ORF1ab/nsp6160Q160QcaAcaG33AY.440.000018
ORF1ab/nsp6160Q160KCaaAaa33B.1.1.280.000934
ORF1ab/nsp6160Q160KCaaAaa33B.1.1.4090.008499
ORF1ab/nsp6160Q160HcaAcaC33B.1.1.70.000003
ORF1ab/nsp6160Q160LcAacTa33B.1.1.70.000003
ORF1ab/nsp6160Q160RcAacGa33B.1.1.830.00813
ORF1ab/nsp6160Q160KCaaAaa33B.1.20.000026
ORF1ab/nsp6160Q160KCaaAaa33B.1.2580.0002
ORF1ab/nsp6160Q160RcAacGa33B.1.3510.000089
ORF1ab/nsp6160Q160QcaAcaG33B.1.5950.000783
ORF1ab/nsp6160Q160RcAacGa33B.1.6090.001438
ORF1ab/nsp6160Q160KCaaAaa33B.1.6090.001438
ORF1ab/nsp6160Q160RcAacGa33C.370.000348
ORF1ab/nsp6160Q160XCaaTaa33D.20.000225
ORF1ab/nsp6160Q160RcAacGa33P.1.150.000697
ORF1ab/nsp6160Q160NCaAAaC220.111111
ORF1ab/nsp6160Q160ECaaGaa220.111111
ORF1ab/nsp6160Q160XCaaTaa220.111111
ORF1ab/nsp6160Q160DCaAGaC220.111111
ORF1ab/nsp6160Q160PcAacCa22All0
ORF1ab/nsp6160Q160del1cAac-a22All0
ORF1ab/nsp6160Q160KCaaAaa22AY.1030.000012
ORF1ab/nsp6160Q160RcAacGa22AY.1130.000285
ORF1ab/nsp6160Q160KCaaAaa22AY.1200.000074
ORF1ab/nsp6160Q160KCaaAaa22AY.200.000078
ORF1ab/nsp6160Q160QcaAcaG22AY.290.000032
ORF1ab/nsp6160Q160RcAacGa22AY.330.000134
ORF1ab/nsp6160Q160HcaAcaC22AY.40.000003
ORF1ab/nsp6160Q160QcaAcaG22AY.40.000003
ORF1ab/nsp6160Q160RcAacGa22AY.40.000003
ORF1ab/nsp6160Q160QcaAcaG22AY.430.000009
ORF1ab/nsp6160Q160KCaaAaa22B.1.1.2200.003717
ORF1ab/nsp6160Q160RcAacGa22B.1.1.250.001137
ORF1ab/nsp6160Q160KCaaAaa22B.1.1.3720.001377
ORF1ab/nsp6160Q160RcAacGa22B.1.1.3970.004505
ORF1ab/nsp6160Q160RcAacGa22B.1.1.4040.031746
ORF1ab/nsp6160Q160RcAacGa22B.1.1.4090.005666
ORF1ab/nsp6160Q160RcAAcGC12B.1.1.4110.014706
ORF1ab/nsp6160Q160RcAacGa12B.1.1.4110.014706
ORF1ab/nsp6160Q160RcAacGa22B.1.1.990.047619
ORF1ab/nsp6160Q160XCaaTaa22B.1.1770.000026
ORF1ab/nsp6160Q160RcAacGa22B.1.2340.000264
ORF1ab/nsp6160Q160KCaaAaa22B.1.360.000292
ORF1ab/nsp6160Q160KCaaAaa22B.1.36.290.001035
ORF1ab/nsp6160Q160RcAacGa22B.1.5760.001813
ORF1ab/nsp6160Q160KCaaAaa22B.1.5960.000174
ORF1ab/nsp6160Q160HcaAcaC12B.1.617.20.000004
ORF1ab/nsp6160Q160HcaAcaT12B.1.617.20.000004
ORF1ab/nsp6160Q160RcAacGa22P.10.000032
ORF1ab/nsp6160Q160delCAA---11A0.000387
ORF1ab/nsp6160Q160del2cAAc--11All0
ORF1ab/nsp6160Q160RcAacGa11AY.1000.000046
ORF1ab/nsp6160Q160KCaaAaa11AY.1010.00049
ORF1ab/nsp6160Q160RcAacGa11AY.1100.000113
ORF1ab/nsp6160Q160KCaaAaa11AY.1160.000287
ORF1ab/nsp6160Q160LcAacTa11AY.1190.000035
ORF1ab/nsp6160Q160delCAA---11AY.1200.000037
ORF1ab/nsp6160Q160QcaAcaG11AY.200.000039
ORF1ab/nsp6160Q160HcaAcaC11AY.230.00007
ORF1ab/nsp6160Q160RcAacGa11AY.23.10.000417
ORF1ab/nsp6160Q160XCaaTaa11AY.250.000006
ORF1ab/nsp6160Q160KCaaAaa11AY.250.000006
ORF1ab/nsp6160Q160RcAacGa11AY.260.000028
ORF1ab/nsp6160Q160XCaaTaa11AY.30.00001
ORF1ab/nsp6160Q160XCaaTaa11AY.300.000396
ORF1ab/nsp6160Q160RcAacGa11AY.34.10.00051
ORF1ab/nsp6160Q160HcaAcaC11AY.370.000316
ORF1ab/nsp6160Q160XCaaTaa11AY.4.20.000022
ORF1ab/nsp6160Q160RcAacGa11AY.4.20.000022
ORF1ab/nsp6160Q160RcAacGa11AY.4.2.10.000149
ORF1ab/nsp6160Q160delCAA---11AY.420.00004
ORF1ab/nsp6160Q160KCaaAaa11AY.420.00004
ORF1ab/nsp6160Q160XCaaTaa11AY.430.000004
ORF1ab/nsp6160Q160PcAacCa11AY.430.000004
ORF1ab/nsp6160Q160DCaAGaT11AY.430.000004
ORF1ab/nsp6160Q160HcaAcaC11AY.440.000006
ORF1ab/nsp6160Q160ECaaGaa11AY.440.000006
ORF1ab/nsp6160Q160del1cAac-a11AY.440.000006
ORF1ab/nsp6160Q160KCaaAaa11AY.450.000122
ORF1ab/nsp6160Q160QcaAcaG11AY.460.000104
ORF1ab/nsp6160Q160KCaaAaa11AY.46.20.000635
ORF1ab/nsp6160Q160RcAacGa11AY.46.60.000072
ORF1ab/nsp6160Q160QcaAcaG11AY.470.000031
ORF1ab/nsp6160Q160RcAacGa11AY.480.000465
ORF1ab/nsp6160Q160QcaAcaG11AY.50.000021
ORF1ab/nsp6160Q160KCaaAaa11AY.60.000041
ORF1ab/nsp6160Q160RcAacGa11AY.600.000938
ORF1ab/nsp6160Q160HcaAcaT11AY.70.000196
ORF1ab/nsp6160Q160delCAA---11AY.750.000056
ORF1ab/nsp6160Q160HcaAcaT11AY.750.000056
ORF1ab/nsp6160Q160RcAacGa11AY.75.10.00018
ORF1ab/nsp6160Q160delCAA---11AY.780.001541
ORF1ab/nsp6160Q160RcAacGa11AY.920.000287
ORF1ab/nsp6160Q160RcAacGa11AY.930.000273
ORF1ab/nsp6160Q160QcaAcaG11AY.940.000443
ORF1ab/nsp6160Q160RcAacGa11AY.960.002075
ORF1ab/nsp6160Q160KCaaAaa11AY.980.000079
ORF1ab/nsp6160Q160DCaAGaT11AY.990.001049
ORF1ab/nsp6160Q160KCaaAaa11B0.000128
ORF1ab/nsp6160Q160LcAacTa11B.10.000009
ORF1ab/nsp6160Q160QcaAcaG11B.10.000009
ORF1ab/nsp6160Q160PcAacCa11B.10.000009
ORF1ab/nsp6160Q160HcaAcaC11B.10.000009
ORF1ab/nsp6160Q160XCaaTaa11B.1.10.000018
ORF1ab/nsp6160Q160NCaAAaC11B.1.10.000018
ORF1ab/nsp6160Q160delCAA---11B.1.10.000018
ORF1ab/nsp6160Q160KCaaAaa11B.1.1.10.000327
ORF1ab/nsp6160Q160RcAacGa11B.1.1.100.001115
ORF1ab/nsp6160Q160QcaAcaG11B.1.1.1390.022727
ORF1ab/nsp6160Q160RcAacGa11B.1.1.1530.001095
ORF1ab/nsp6160Q160RcAacGa11B.1.1.1740.003378
ORF1ab/nsp6160Q160RcAacGa11B.1.1.2000.007463
ORF1ab/nsp6160Q160RcAacGa11B.1.1.2140.000055
ORF1ab/nsp6160Q160QcaAcaG11B.1.1.2220.000204
ORF1ab/nsp6160Q160RcAacGa11B.1.1.2360.006897
ORF1ab/nsp6160Q160RcAacGa11B.1.1.2540.011236
ORF1ab/nsp6160Q160delCAA---11B.1.1.2840.000107
ORF1ab/nsp6160Q160KCaaAaa11B.1.1.2940.001266
ORF1ab/nsp6160Q160KCaaAaa11B.1.1.2970.002237
ORF1ab/nsp6160Q160RcAacGa11B.1.1.3070.002532
ORF1ab/nsp6160Q160RcAacGa11B.1.1.3160.000925
ORF1ab/nsp6160Q160RcAacGa11B.1.1.330.000421
ORF1ab/nsp6160Q160RcAacGa11B.1.1.3480.000796
ORF1ab/nsp6160Q160KCaaAaa11B.1.1.3690.000446
ORF1ab/nsp6160Q160RcAacGa11B.1.1.3700.012658
ORF1ab/nsp6160Q160RcAacGa11B.1.1.3960.045455
ORF1ab/nsp6160Q160delCAA---11B.1.1.4090.002833
ORF1ab/nsp6160Q160HcaAcaC11B.1.1.4110.014706
ORF1ab/nsp6160Q160RcAacGa11B.1.1.4170.002703
ORF1ab/nsp6160Q160RcAacGa11B.1.1.5060.037037
ORF1ab/nsp6160Q160RcAacGa11B.1.1.5180.006329
ORF1ab/nsp6160Q160RcAacGa11B.1.1.5190.00004
ORF1ab/nsp6160Q160KCaaAaa11B.1.1.5250.005464
ORF1ab/nsp6160Q160RcAacGa11B.1.1.560.017857
ORF1ab/nsp6160Q160XCaaTaa11B.1.1260.001276
ORF1ab/nsp6160Q160RcAacGa11B.1.1390.000733
ORF1ab/nsp6160Q160RcAacGa11B.1.1600.000031
ORF1ab/nsp6160Q160delCAA---11B.1.1600.000031
ORF1ab/nsp6160Q160KCaaAaa11B.1.160.120.00641
ORF1ab/nsp6160Q160XCaaTaa11B.1.160.300.002976
ORF1ab/nsp6160Q160del1cAac-a11B.1.1770.000013
ORF1ab/nsp6160Q160XCaaTaa11B.1.177.160.000664
ORF1ab/nsp6160Q160XCaaTaa11B.1.177.210.000076
ORF1ab/nsp6160Q160QcaAcaG11B.1.177.440.000519
ORF1ab/nsp6160Q160HcaAcaC11B.1.177.50.001242
ORF1ab/nsp6160Q160delCAA---11B.1.177.510.004566
ORF1ab/nsp6160Q160RcAacGa11B.1.177.70.000165
ORF1ab/nsp6160Q160HcaAcaC11B.1.177.770.000726
ORF1ab/nsp6160Q160RcAacGa11B.1.1990.004132
ORF1ab/nsp6160Q160XCaaTaa11B.1.20.000009
ORF1ab/nsp6160Q160XCaaTaa11B.1.2210.000071
ORF1ab/nsp6160Q160KCaaAaa11B.1.2320.000537
ORF1ab/nsp6160Q160RcAacGa11B.1.2320.000537
ORF1ab/nsp6160Q160XCaaTaa11B.1.2430.00007
ORF1ab/nsp6160Q160RcAacGa11B.1.2430.00007
ORF1ab/nsp6160Q160KCaaAaa11B.1.2430.00007
ORF1ab/nsp6160Q160HcaAcaC11B.1.258.170.000104
ORF1ab/nsp6160Q160KCaaAaa11B.1.2790.000514
ORF1ab/nsp6160Q160RcAacGa11B.1.3110.000275
ORF1ab/nsp6160Q160XCaaTaa11B.1.3110.000275
ORF1ab/nsp6160Q160RcAacGa11B.1.3230.020833
ORF1ab/nsp6160Q160KCaaAaa11B.1.3370.005587
ORF1ab/nsp6160Q160RcAacGa11B.1.3670.000792
ORF1ab/nsp6160Q160RcAacGa11B.1.3690.000285
ORF1ab/nsp6160Q160XCaaTaa11B.1.3960.000706
ORF1ab/nsp6160Q160RcAacGa11B.1.3990.001934
ORF1ab/nsp6160Q160QcaAcaG11B.1.4270.00005
ORF1ab/nsp6160Q160HcaAcaC11B.1.4280.00102
ORF1ab/nsp6160Q160KCaaAaa11B.1.4290.000024
ORF1ab/nsp6160Q160RcAacGa11B.1.4340.052632
ORF1ab/nsp6160Q160RcAacGa11B.1.4560.003268
ORF1ab/nsp6160Q160RcAacGa11B.1.4590.004082
ORF1ab/nsp6160Q160RcAacGa11B.1.4680.005714
ORF1ab/nsp6160Q160RcAacGa11B.1.5170.000427
ORF1ab/nsp6160Q160RcAacGa11B.1.5250.000113
ORF1ab/nsp6160Q160HcaAcaC11B.1.5250.000113
ORF1ab/nsp6160Q160RcAacGa11B.1.5260.000024
ORF1ab/nsp6160Q160RcAacGa11B.1.5770.000687
ORF1ab/nsp6160Q160RcAacGa11B.1.5800.004065
ORF1ab/nsp6160Q160RcAacGa11B.1.5820.000491
ORF1ab/nsp6160Q160XCaaTaa11B.1.5820.000491
ORF1ab/nsp6160Q160XCaaTaa11B.1.5950.000261
ORF1ab/nsp6160Q160delCAA---11B.1.617.10.000129
ORF1ab/nsp6160Q160del2cAAc--11B.1.617.20.000004
ORF1ab/nsp6160Q160KCaaAaa11B.1.6230.000536
ORF1ab/nsp6160Q160delCAA---11B.1.6300.005236
ORF1ab/nsp6160Q160RcAacGa11B.1.6330.041667
ORF1ab/nsp6160Q160RcAacGa11B.1.6380.052632
ORF1ab/nsp6160Q160KCaaAaa11B.1.780.008547
ORF1ab/nsp6160Q160RcAacGa11B.40.002208
ORF1ab/nsp6160Q160RcAacGa11C.10.002392
ORF1ab/nsp6160Q160KCaaAaa11C.360.000911
ORF1ab/nsp6160Q160KCaaAaa11C.36.3.10.002717
ORF1ab/nsp6160Q160delCAA---11C.370.000116
ORF1ab/nsp6160Q160RcAacGa11C.37.10.002618
ORF1ab/nsp6160Q160delCAA---11N.40.004255
ORF1ab/nsp6160Q160RcAacGa11P.1.10.000318
ORF1ab/nsp6160Q160RcAacGa11P.1.140.000048
ORF1ab/nsp6160Q160delCAA---11Q.20.000613
ORF1ab/nsp6160Q160QcaAcaG11Q.40.000455