CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 160

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6160Q160RQ3729RnonsyncAacGa20206202040.99990111450-11452
ORF1ab/nsp6160Q160RQ3729RnonsynCAaAGa2020610.000049490211450-11452
ORF1ab/nsp6160Q160RQ3729RnonsyncAAcGC2020610.000049490211450-11452
ORF1ab/nsp6160Q160KQ3729KnonsynCaaAaa31573157111450-11452
ORF1ab/nsp6160Q160QQ3729QsyncaAcaG8585111450-11452
ORF1ab/nsp6160Q160XQ3729XnonsynCaaTaa3636111450-11452
ORF1ab/nsp6160Q160delQ3729deldelCAA---2929111450-11452
ORF1ab/nsp6160Q160HQ3729HnonsyncaAcaC26230.88461511450-11452
ORF1ab/nsp6160Q160HQ3729HnonsyncaAcaT2630.11538511450-11452
ORF1ab/nsp6160Q160LQ3729LnonsyncAacTa55111450-11452
ORF1ab/nsp6160Q160DQ3729DnonsynCaAGaT420.511450-11452
ORF1ab/nsp6160Q160DQ3729DnonsynCaAGaC420.511450-11452
ORF1ab/nsp6160Q160NQ3729NnonsynCaAAaC33111450-11452
ORF1ab/nsp6160Q160EQ3729EnonsynCaaGaa33111450-11452
ORF1ab/nsp6160Q160del1Q3729del1delcAac-a22111450-11452
ORF1ab/nsp6160Q160PQ3729PnonsyncAacCa22111450-11452
ORF1ab/nsp6160Q160del2Q3729del2delcAAc--11111450-11452

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6160Q160RcAacGa2020420206All0.003864
ORF1ab/nsp6160Q160RCAaAGa120206All0
ORF1ab/nsp6160Q160RcAAcGC120206All0
ORF1ab/nsp6160Q160RcAacGa1100511006B.1.6210.974152
ORF1ab/nsp6160Q160RCAaAGa111006B.1.6210.000089
ORF1ab/nsp6160Q160RcAacGa52045204B.1.5960.453468
ORF1ab/nsp6160Q160KCaaAaa31573157All0.000604
ORF1ab/nsp6160Q160KCaaAaa20992099AY.40.003267
ORF1ab/nsp6160Q160RcAacGa19631963B.1.621.10.992919
ORF1ab/nsp6160Q160RcAacGa987987B.1.1.4200.992958
ORF1ab/nsp6160Q160KCaaAaa384384B.1.10.006966
ORF1ab/nsp6160Q160RcAacGa276276B.10.002528
ORF1ab/nsp6160Q160KCaaAaa262262P.40.996198
ORF1ab/nsp6160Q160RcAacGa173173AT.10.887179
ORF1ab/nsp6160Q160RcAacGa167167B.1.20.00147
ORF1ab/nsp6160Q160RcAacGa102102B.1.5490.733813
ORF1ab/nsp6160Q160RcAacGa9797B.1.10.00176
ORF1ab/nsp6160Q160QcaAcaG8585All0.000016
ORF1ab/nsp6160Q160KCaaAaa5959B.1.36.160.084046
ORF1ab/nsp6160Q160KCaaAaa5858P.50.794521
ORF1ab/nsp6160Q160KCaaAaa5454B.1.1.5220.931034
ORF1ab/nsp6160Q160KCaaAaa5050B.1.177.460.045914
ORF1ab/nsp6160Q160XCaaTaa3636All0.000007
ORF1ab/nsp6160Q160delCAA---2929All0.000006
ORF1ab/nsp6160Q160HcaAcaC2326All0.000004
ORF1ab/nsp6160Q160HcaAcaT326All0.000001
ORF1ab/nsp6160Q160KCaaAaa2525B.1.1.4190.185185
ORF1ab/nsp6160Q160KCaaAaa2424B.10.00022
ORF1ab/nsp6160Q160QcaAcaG2020B.1.3510.000595
ORF1ab/nsp6160Q160KCaaAaa1717B.1.617.20.000064
ORF1ab/nsp6160Q160QcaAcaG1616AY.410.004703
ORF1ab/nsp6160Q160RcAacGa1515B.1.6230.008047
ORF1ab/nsp6160Q160KCaaAaa1111AY.390.000272
ORF1ab/nsp6160Q160KCaaAaa1111AY.430.000049
ORF1ab/nsp6160Q160RcAacGa1010B.1.4290.000235
ORF1ab/nsp6160Q160RcAacGa99B0.00115
ORF1ab/nsp6160Q160RcAacGa99B.1.1.70.000008
ORF1ab/nsp6160Q160RcAacGa88AY.230.000558
ORF1ab/nsp6160Q160RcAacGa88AY.30.00008
ORF1ab/nsp6160Q160KCaaAaa88AY.850.003417
ORF1ab/nsp6160Q160KCaaAaa77AY.890.034314
ORF1ab/nsp6160Q160QcaAcaG77B.1.1.70.000006
ORF1ab/nsp6160Q160delCAA---77B.1.1.70.000006
ORF1ab/nsp6160Q160KCaaAaa77B.1.1770.000092
ORF1ab/nsp6160Q160RcAacGa77B.1.2580.000466
ORF1ab/nsp6160Q160RcAacGa66AY.390.000148
ORF1ab/nsp6160Q160RcAacGa66AY.430.000027
ORF1ab/nsp6160Q160RcAacGa66AY.440.000037
ORF1ab/nsp6160Q160XCaaTaa66B.10.000055
ORF1ab/nsp6160Q160XCaaTaa66B.1.1.70.000005
ORF1ab/nsp6160Q160QcaAcaG66B.1.617.20.000023
ORF1ab/nsp6160Q160RcAacGa66B.1.617.20.000023
ORF1ab/nsp6160Q160LcAacTa55All0.000001
ORF1ab/nsp6160Q160QcaAcaG55B.1.10.000091
ORF1ab/nsp6160Q160RcAacGa55B.1.177.730.002831
ORF1ab/nsp6160Q160RcAacGa55R.10.00045
ORF1ab/nsp6160Q160KCaaAaa440.222222
ORF1ab/nsp6160Q160HcaAcaC440.222222
ORF1ab/nsp6160Q160DCaAGaT24All0
ORF1ab/nsp6160Q160DCaAGaC24All0
ORF1ab/nsp6160Q160QcaAcaG44AY.250.000024
ORF1ab/nsp6160Q160RcAacGa44AY.250.000024
ORF1ab/nsp6160Q160KCaaAaa44B.1.1.2220.000816
ORF1ab/nsp6160Q160KCaaAaa44B.1.1.4480.00813
ORF1ab/nsp6160Q160RcAacGa44B.1.1.5150.08
ORF1ab/nsp6160Q160KCaaAaa44B.1.1600.000125
ORF1ab/nsp6160Q160RcAacGa44B.1.1770.000053
ORF1ab/nsp6160Q160RcAacGa44B.1.2210.000284
ORF1ab/nsp6160Q160RcAacGa44B.1.4270.000202
ORF1ab/nsp6160Q160RcAacGa44B.1.438.10.000429
ORF1ab/nsp6160Q160RcAacGa44B.1.5330.038462
ORF1ab/nsp6160Q160delCAA---44B.1.617.20.000015
ORF1ab/nsp6160Q160KCaaAaa44C.380.032258
ORF1ab/nsp6160Q160RcAacGa44N.60.028369
ORF1ab/nsp6160Q160QcaAcaG44P.10.000063
ORF1ab/nsp6160Q160NCaAAaC33All0.000001
ORF1ab/nsp6160Q160ECaaGaa33All0.000001
ORF1ab/nsp6160Q160KCaaAaa33AY.1050.001929
ORF1ab/nsp6160Q160KCaaAaa33AY.30.00003
ORF1ab/nsp6160Q160HcaAcaC33AY.30.00003
ORF1ab/nsp6160Q160delCAA---33AY.40.000005
ORF1ab/nsp6160Q160QcaAcaG33AY.440.000018
ORF1ab/nsp6160Q160KCaaAaa33B.1.1.280.000934
ORF1ab/nsp6160Q160KCaaAaa33B.1.1.4090.008499
ORF1ab/nsp6160Q160HcaAcaC33B.1.1.70.000003
ORF1ab/nsp6160Q160LcAacTa33B.1.1.70.000003
ORF1ab/nsp6160Q160RcAacGa33B.1.1.830.00813
ORF1ab/nsp6160Q160KCaaAaa33B.1.20.000026
ORF1ab/nsp6160Q160KCaaAaa33B.1.2580.0002
ORF1ab/nsp6160Q160RcAacGa33B.1.3510.000089
ORF1ab/nsp6160Q160QcaAcaG33B.1.5950.000783
ORF1ab/nsp6160Q160RcAacGa33B.1.6090.001438
ORF1ab/nsp6160Q160KCaaAaa33B.1.6090.001438
ORF1ab/nsp6160Q160RcAacGa33C.370.000348
ORF1ab/nsp6160Q160XCaaTaa33D.20.000225
ORF1ab/nsp6160Q160RcAacGa33P.1.150.000697
ORF1ab/nsp6160Q160NCaAAaC220.111111
ORF1ab/nsp6160Q160ECaaGaa220.111111
ORF1ab/nsp6160Q160XCaaTaa220.111111
ORF1ab/nsp6160Q160DCaAGaC220.111111
ORF1ab/nsp6160Q160PcAacCa22All0
ORF1ab/nsp6160Q160del1cAac-a22All0
ORF1ab/nsp6160Q160KCaaAaa22AY.1030.000012
ORF1ab/nsp6160Q160RcAacGa22AY.1130.000285
ORF1ab/nsp6160Q160KCaaAaa22AY.1200.000074
ORF1ab/nsp6160Q160KCaaAaa22AY.200.000078
ORF1ab/nsp6160Q160QcaAcaG22AY.290.000032
ORF1ab/nsp6160Q160RcAacGa22AY.330.000134
ORF1ab/nsp6160Q160HcaAcaC22AY.40.000003
ORF1ab/nsp6160Q160QcaAcaG22AY.40.000003
ORF1ab/nsp6160Q160RcAacGa22AY.40.000003
ORF1ab/nsp6160Q160QcaAcaG22AY.430.000009
ORF1ab/nsp6160Q160KCaaAaa22B.1.1.2200.003717
ORF1ab/nsp6160Q160RcAacGa22B.1.1.250.001137
ORF1ab/nsp6160Q160KCaaAaa22B.1.1.3720.001377
ORF1ab/nsp6160Q160RcAacGa22B.1.1.3970.004505
ORF1ab/nsp6160Q160RcAacGa22B.1.1.4040.031746
ORF1ab/nsp6160Q160RcAacGa22B.1.1.4090.005666
ORF1ab/nsp6160Q160RcAAcGC12B.1.1.4110.014706
ORF1ab/nsp6160Q160RcAacGa12B.1.1.4110.014706
ORF1ab/nsp6160Q160RcAacGa22B.1.1.990.047619
ORF1ab/nsp6160Q160XCaaTaa22B.1.1770.000026
ORF1ab/nsp6160Q160RcAacGa22B.1.2340.000264
ORF1ab/nsp6160Q160KCaaAaa22B.1.360.000292
ORF1ab/nsp6160Q160KCaaAaa22B.1.36.290.001035
ORF1ab/nsp6160Q160RcAacGa22B.1.5760.001813
ORF1ab/nsp6160Q160KCaaAaa22B.1.5960.000174
ORF1ab/nsp6160Q160HcaAcaC12B.1.617.20.000004
ORF1ab/nsp6160Q160HcaAcaT12B.1.617.20.000004
ORF1ab/nsp6160Q160RcAacGa22P.10.000032
ORF1ab/nsp6160Q160delCAA---11A0.000387
ORF1ab/nsp6160Q160del2cAAc--11All0
ORF1ab/nsp6160Q160RcAacGa11AY.1000.000046
ORF1ab/nsp6160Q160KCaaAaa11AY.1010.00049
ORF1ab/nsp6160Q160RcAacGa11AY.1100.000113
ORF1ab/nsp6160Q160KCaaAaa11AY.1160.000287
ORF1ab/nsp6160Q160LcAacTa11AY.1190.000035
ORF1ab/nsp6160Q160delCAA---11AY.1200.000037
ORF1ab/nsp6160Q160QcaAcaG11AY.200.000039
ORF1ab/nsp6160Q160HcaAcaC11AY.230.00007
ORF1ab/nsp6160Q160RcAacGa11AY.23.10.000417
ORF1ab/nsp6160Q160XCaaTaa11AY.250.000006
ORF1ab/nsp6160Q160KCaaAaa11AY.250.000006
ORF1ab/nsp6160Q160RcAacGa11AY.260.000028
ORF1ab/nsp6160Q160XCaaTaa11AY.30.00001
ORF1ab/nsp6160Q160XCaaTaa11AY.300.000396
ORF1ab/nsp6160Q160RcAacGa11AY.34.10.00051
ORF1ab/nsp6160Q160HcaAcaC11AY.370.000316
ORF1ab/nsp6160Q160XCaaTaa11AY.4.20.000022
ORF1ab/nsp6160Q160RcAacGa11AY.4.20.000022
ORF1ab/nsp6160Q160RcAacGa11AY.4.2.10.000149
ORF1ab/nsp6160Q160delCAA---11AY.420.00004
ORF1ab/nsp6160Q160KCaaAaa11AY.420.00004
ORF1ab/nsp6160Q160XCaaTaa11AY.430.000004
ORF1ab/nsp6160Q160PcAacCa11AY.430.000004
ORF1ab/nsp6160Q160DCaAGaT11AY.430.000004
ORF1ab/nsp6160Q160HcaAcaC11AY.440.000006
ORF1ab/nsp6160Q160ECaaGaa11AY.440.000006
ORF1ab/nsp6160Q160del1cAac-a11AY.440.000006
ORF1ab/nsp6160Q160KCaaAaa11AY.450.000122
ORF1ab/nsp6160Q160QcaAcaG11AY.460.000104
ORF1ab/nsp6160Q160KCaaAaa11AY.46.20.000635
ORF1ab/nsp6160Q160RcAacGa11AY.46.60.000072
ORF1ab/nsp6160Q160QcaAcaG11AY.470.000031
ORF1ab/nsp6160Q160RcAacGa11AY.480.000465
ORF1ab/nsp6160Q160QcaAcaG11AY.50.000021
ORF1ab/nsp6160Q160KCaaAaa11AY.60.000041
ORF1ab/nsp6160Q160RcAacGa11AY.600.000938
ORF1ab/nsp6160Q160HcaAcaT11AY.70.000196
ORF1ab/nsp6160Q160delCAA---11AY.750.000056
ORF1ab/nsp6160Q160HcaAcaT11AY.750.000056
ORF1ab/nsp6160Q160RcAacGa11AY.75.10.00018
ORF1ab/nsp6160Q160delCAA---11AY.780.001541
ORF1ab/nsp6160Q160RcAacGa11AY.920.000287
ORF1ab/nsp6160Q160RcAacGa11AY.930.000273
ORF1ab/nsp6160Q160QcaAcaG11AY.940.000443
ORF1ab/nsp6160Q160RcAacGa11AY.960.002075
ORF1ab/nsp6160Q160KCaaAaa11AY.980.000079
ORF1ab/nsp6160Q160DCaAGaT11AY.990.001049
ORF1ab/nsp6160Q160KCaaAaa11B0.000128
ORF1ab/nsp6160Q160LcAacTa11B.10.000009
ORF1ab/nsp6160Q160QcaAcaG11B.10.000009
ORF1ab/nsp6160Q160PcAacCa11B.10.000009
ORF1ab/nsp6160Q160HcaAcaC11B.10.000009
ORF1ab/nsp6160Q160XCaaTaa11B.1.10.000018
ORF1ab/nsp6160Q160NCaAAaC11B.1.10.000018
ORF1ab/nsp6160Q160delCAA---11B.1.10.000018
ORF1ab/nsp6160Q160KCaaAaa11B.1.1.10.000327
ORF1ab/nsp6160Q160RcAacGa11B.1.1.100.001115
ORF1ab/nsp6160Q160QcaAcaG11B.1.1.1390.022727
ORF1ab/nsp6160Q160RcAacGa11B.1.1.1530.001095
ORF1ab/nsp6160Q160RcAacGa11B.1.1.1740.003378
ORF1ab/nsp6160Q160RcAacGa11B.1.1.2000.007463
ORF1ab/nsp6160Q160RcAacGa11B.1.1.2140.000055
ORF1ab/nsp6160Q160QcaAcaG11B.1.1.2220.000204
ORF1ab/nsp6160Q160RcAacGa11B.1.1.2360.006897
ORF1ab/nsp6160Q160RcAacGa11B.1.1.2540.011236
ORF1ab/nsp6160Q160delCAA---11B.1.1.2840.000107
ORF1ab/nsp6160Q160KCaaAaa11B.1.1.2940.001266
ORF1ab/nsp6160Q160KCaaAaa11B.1.1.2970.002237
ORF1ab/nsp6160Q160RcAacGa11B.1.1.3070.002532
ORF1ab/nsp6160Q160RcAacGa11B.1.1.3160.000925
ORF1ab/nsp6160Q160RcAacGa11B.1.1.330.000421
ORF1ab/nsp6160Q160RcAacGa11B.1.1.3480.000796
ORF1ab/nsp6160Q160KCaaAaa11B.1.1.3690.000446
ORF1ab/nsp6160Q160RcAacGa11B.1.1.3700.012658
ORF1ab/nsp6160Q160RcAacGa11B.1.1.3960.045455
ORF1ab/nsp6160Q160delCAA---11B.1.1.4090.002833
ORF1ab/nsp6160Q160HcaAcaC11B.1.1.4110.014706
ORF1ab/nsp6160Q160RcAacGa11B.1.1.4170.002703
ORF1ab/nsp6160Q160RcAacGa11B.1.1.5060.037037
ORF1ab/nsp6160Q160RcAacGa11B.1.1.5180.006329
ORF1ab/nsp6160Q160RcAacGa11B.1.1.5190.00004
ORF1ab/nsp6160Q160KCaaAaa11B.1.1.5250.005464
ORF1ab/nsp6160Q160RcAacGa11B.1.1.560.017857
ORF1ab/nsp6160Q160XCaaTaa11B.1.1260.001276
ORF1ab/nsp6160Q160RcAacGa11B.1.1390.000733
ORF1ab/nsp6160Q160RcAacGa11B.1.1600.000031
ORF1ab/nsp6160Q160delCAA---11B.1.1600.000031
ORF1ab/nsp6160Q160KCaaAaa11B.1.160.120.00641
ORF1ab/nsp6160Q160XCaaTaa11B.1.160.300.002976
ORF1ab/nsp6160Q160del1cAac-a11B.1.1770.000013
ORF1ab/nsp6160Q160XCaaTaa11B.1.177.160.000664
ORF1ab/nsp6160Q160XCaaTaa11B.1.177.210.000076
ORF1ab/nsp6160Q160QcaAcaG11B.1.177.440.000519
ORF1ab/nsp6160Q160HcaAcaC11B.1.177.50.001242
ORF1ab/nsp6160Q160delCAA---11B.1.177.510.004566
ORF1ab/nsp6160Q160RcAacGa11B.1.177.70.000165
ORF1ab/nsp6160Q160HcaAcaC11B.1.177.770.000726
ORF1ab/nsp6160Q160RcAacGa11B.1.1990.004132
ORF1ab/nsp6160Q160XCaaTaa11B.1.20.000009
ORF1ab/nsp6160Q160XCaaTaa11B.1.2210.000071
ORF1ab/nsp6160Q160KCaaAaa11B.1.2320.000537
ORF1ab/nsp6160Q160RcAacGa11B.1.2320.000537
ORF1ab/nsp6160Q160XCaaTaa11B.1.2430.00007
ORF1ab/nsp6160Q160RcAacGa11B.1.2430.00007
ORF1ab/nsp6160Q160KCaaAaa11B.1.2430.00007
ORF1ab/nsp6160Q160HcaAcaC11B.1.258.170.000104
ORF1ab/nsp6160Q160KCaaAaa11B.1.2790.000514
ORF1ab/nsp6160Q160RcAacGa11B.1.3110.000275
ORF1ab/nsp6160Q160XCaaTaa11B.1.3110.000275
ORF1ab/nsp6160Q160RcAacGa11B.1.3230.020833
ORF1ab/nsp6160Q160KCaaAaa11B.1.3370.005587
ORF1ab/nsp6160Q160RcAacGa11B.1.3670.000792
ORF1ab/nsp6160Q160RcAacGa11B.1.3690.000285
ORF1ab/nsp6160Q160XCaaTaa11B.1.3960.000706
ORF1ab/nsp6160Q160RcAacGa11B.1.3990.001934
ORF1ab/nsp6160Q160QcaAcaG11B.1.4270.00005
ORF1ab/nsp6160Q160HcaAcaC11B.1.4280.00102
ORF1ab/nsp6160Q160KCaaAaa11B.1.4290.000024
ORF1ab/nsp6160Q160RcAacGa11B.1.4340.052632
ORF1ab/nsp6160Q160RcAacGa11B.1.4560.003268
ORF1ab/nsp6160Q160RcAacGa11B.1.4590.004082
ORF1ab/nsp6160Q160RcAacGa11B.1.4680.005714
ORF1ab/nsp6160Q160RcAacGa11B.1.5170.000427
ORF1ab/nsp6160Q160RcAacGa11B.1.5250.000113
ORF1ab/nsp6160Q160HcaAcaC11B.1.5250.000113
ORF1ab/nsp6160Q160RcAacGa11B.1.5260.000024
ORF1ab/nsp6160Q160RcAacGa11B.1.5770.000687
ORF1ab/nsp6160Q160RcAacGa11B.1.5800.004065
ORF1ab/nsp6160Q160RcAacGa11B.1.5820.000491
ORF1ab/nsp6160Q160XCaaTaa11B.1.5820.000491
ORF1ab/nsp6160Q160XCaaTaa11B.1.5950.000261
ORF1ab/nsp6160Q160delCAA---11B.1.617.10.000129
ORF1ab/nsp6160Q160del2cAAc--11B.1.617.20.000004
ORF1ab/nsp6160Q160KCaaAaa11B.1.6230.000536
ORF1ab/nsp6160Q160delCAA---11B.1.6300.005236
ORF1ab/nsp6160Q160RcAacGa11B.1.6330.041667
ORF1ab/nsp6160Q160RcAacGa11B.1.6380.052632
ORF1ab/nsp6160Q160KCaaAaa11B.1.780.008547
ORF1ab/nsp6160Q160RcAacGa11B.40.002208
ORF1ab/nsp6160Q160RcAacGa11C.10.002392
ORF1ab/nsp6160Q160KCaaAaa11C.360.000911
ORF1ab/nsp6160Q160KCaaAaa11C.36.3.10.002717
ORF1ab/nsp6160Q160delCAA---11C.370.000116
ORF1ab/nsp6160Q160RcAacGa11C.37.10.002618
ORF1ab/nsp6160Q160delCAA---11N.40.004255
ORF1ab/nsp6160Q160RcAacGa11P.1.10.000318
ORF1ab/nsp6160Q160RcAacGa11P.1.140.000048
ORF1ab/nsp6160Q160delCAA---11Q.20.000613
ORF1ab/nsp6160Q160QcaAcaG11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.