CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 16

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp6	16	L16L	L3585L	syn	ctC	ctT	13590	13433	0.988447	11018-11020
ORF1ab/nsp6	16	L16L	L3585L	syn	ctC	ctA	13590	134	0.00986019	11018-11020
ORF1ab/nsp6	16	L16L	L3585L	syn	ctC	ctG	13590	20	0.00147167	11018-11020
ORF1ab/nsp6	16	L16L	L3585L	syn	CtC	TtA	13590	3	0.000220751	11018-11020
ORF1ab/nsp6	16	L16I	L3585I	nonsyn	Ctc	Atc	199	196	0.984925	11018-11020
ORF1ab/nsp6	16	L16I	L3585I	nonsyn	CtC	AtT	199	2	0.0100503	11018-11020
ORF1ab/nsp6	16	L16I	L3585I	nonsyn	CtC	AtA	199	1	0.00502513	11018-11020
ORF1ab/nsp6	16	L16del	L3585del	del	CTC	---	20	20	1	11018-11020
ORF1ab/nsp6	16	L16F	L3585F	nonsyn	Ctc	Ttc	19	19	1	11018-11020
ORF1ab/nsp6	16	L16P	L3585P	nonsyn	cTc	cCc	11	8	0.727273	11018-11020
ORF1ab/nsp6	16	L16P	L3585P	nonsyn	cTC	cCT	11	3	0.272727	11018-11020
ORF1ab/nsp6	16	L16H	L3585H	nonsyn	cTc	cAc	5	4	0.8	11018-11020
ORF1ab/nsp6	16	L16H	L3585H	nonsyn	cTC	cAT	5	1	0.2	11018-11020
ORF1ab/nsp6	16	L16del1	L3585del1	del	cTc	c-c	3	2	0.666667	11018-11020
ORF1ab/nsp6	16	L16del1	L3585del1	del	ctC	ct-	3	1	0.333333	11018-11020
ORF1ab/nsp6	16	L16V	L3585V	nonsyn	Ctc	Gtc	2	2	1	11018-11020
ORF1ab/nsp6	16	L16N	L3585N	nonsyn	CTC	AAT	2	1	0.5	11018-11020
ORF1ab/nsp6	16	L16N	L3585N	nonsyn	CTc	AAc	2	1	0.5	11018-11020
ORF1ab/nsp6	16	L16T	L3585T	nonsyn	CTC	ACT	2	1	0.5	11018-11020
ORF1ab/nsp6	16	L16T	L3585T	nonsyn	CTc	ACc	2	1	0.5	11018-11020
ORF1ab/nsp6	16	L16Y	L3585Y	nonsyn	CTc	TAc	1	1	1	11018-11020
ORF1ab/nsp6	16	L16Q	L3585Q	nonsyn	cTC	cAA	1	1	1	11018-11020

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp6	16	L16L	ctC	ctT	13433	13590	All	0.002569
ORF1ab/nsp6	16	L16L	ctC	ctA	134	13590	All	0.000026
ORF1ab/nsp6	16	L16L	ctC	ctG	20	13590	All	0.000004
ORF1ab/nsp6	16	L16L	CtC	TtA	3	13590	All	0.000001
ORF1ab/nsp6	16	L16L	ctC	ctT	3500	3508	B.1.1.7	0.003133
ORF1ab/nsp6	16	L16L	ctC	ctA	8	3508	B.1.1.7	0.000007
ORF1ab/nsp6	16	L16L	ctC	ctT	747	760	B.1.617.2	0.002813
ORF1ab/nsp6	16	L16L	ctC	ctA	13	760	B.1.617.2	0.000049
ORF1ab/nsp6	16	L16L	ctC	ctT	468	567	B.1.2	0.004121
ORF1ab/nsp6	16	L16L	ctC	ctA	97	567	B.1.2	0.000854
ORF1ab/nsp6	16	L16L	CtC	TtA	2	567	B.1.2	0.000018
ORF1ab/nsp6	16	L16L	ctC	ctT	482	482	AY.3	0.004794
ORF1ab/nsp6	16	L16L	ctC	ctT	454	454	AY.4	0.000707
ORF1ab/nsp6	16	L16L	ctC	ctT	415	415	AY.44	0.002526
ORF1ab/nsp6	16	L16L	ctC	ctT	409	409	C.37	0.04747
ORF1ab/nsp6	16	L16L	ctC	ctT	336	336	AY.9.2	0.012341
ORF1ab/nsp6	16	L16L	ctC	ctT	318	318	B.1.637	0.023237
ORF1ab/nsp6	16	L16L	ctC	ctT	301	301	AY.6	0.01238
ORF1ab/nsp6	16	L16L	ctC	ctT	298	300	B.1	0.00273
ORF1ab/nsp6	16	L16L	ctC	ctA	2	300	B.1	0.000018
ORF1ab/nsp6	16	L16L	ctC	ctT	287	293	AY.43	0.001272
ORF1ab/nsp6	16	L16L	ctC	ctA	6	293	AY.43	0.000027
ORF1ab/nsp6	16	L16L	ctC	ctT	268	268	AY.12	0.084703
ORF1ab/nsp6	16	L16L	ctC	ctT	245	245	AY.117	0.020707
ORF1ab/nsp6	16	L16L	ctC	ctT	238	238	AY.103	0.001478
ORF1ab/nsp6	16	L16L	ctC	ctT	238	238	B.1.621	0.021068
ORF1ab/nsp6	16	L16L	ctC	ctT	217	217	B.1.429	0.005106
ORF1ab/nsp6	16	L16L	ctC	ctT	215	215	B.1.1.214	0.011923
ORF1ab/nsp6	16	L16L	ctC	ctT	201	201	AY.46.6	0.014514
ORF1ab/nsp6	16	L16I	Ctc	Atc	196	199	All	0.000037
ORF1ab/nsp6	16	L16I	CtC	AtT	2	199	All	0
ORF1ab/nsp6	16	L16I	CtC	AtA	1	199	All	0
ORF1ab/nsp6	16	L16L	ctC	ctT	197	197	P.1	0.003104
ORF1ab/nsp6	16	L16L	ctC	ctT	180	181	B.1.1	0.003265
ORF1ab/nsp6	16	L16L	ctC	ctA	1	181	B.1.1	0.000018
ORF1ab/nsp6	16	L16I	Ctc	Atc	181	181	B.1.517.1	0.952632
ORF1ab/nsp6	16	L16L	ctC	ctT	152	153	AY.25	0.000914
ORF1ab/nsp6	16	L16L	ctC	ctG	1	153	AY.25	0.000006
ORF1ab/nsp6	16	L16L	ctC	ctT	153	153	AY.93	0.04178
ORF1ab/nsp6	16	L16L	ctC	ctT	130	130	AY.4.2	0.00282
ORF1ab/nsp6	16	L16L	ctC	ctT	118	118	B.1.351	0.003508
ORF1ab/nsp6	16	L16L	ctC	ctT	94	95	B.1.177	0.001238
ORF1ab/nsp6	16	L16L	ctC	ctG	1	95	B.1.177	0.000013
ORF1ab/nsp6	16	L16L	ctC	ctT	88	88	B.1.36.36	0.05298
ORF1ab/nsp6	16	L16L	ctC	ctT	78	78	B.1.526	0.001833
ORF1ab/nsp6	16	L16L	ctC	ctT	73	73	P.1.10	0.019671
ORF1ab/nsp6	16	L16L	ctC	ctT	70	70	B.1.258	0.004658
ORF1ab/nsp6	16	L16L	ctC	ctT	69	69	B.1.1.519	0.00274
ORF1ab/nsp6	16	L16L	ctC	ctT	64	64	AY.5	0.001322
ORF1ab/nsp6	16	L16L	ctC	ctT	62	62	AY.102	0.001644
ORF1ab/nsp6	16	L16L	ctC	ctT	59	59	B.1.36.29	0.030523
ORF1ab/nsp6	16	L16L	ctC	ctT	54	54	AY.98	0.004266
ORF1ab/nsp6	16	L16L	ctC	ctT	51	51	AY.118	0.003195
ORF1ab/nsp6	16	L16L	ctC	ctT	51	51	AY.29	0.000804
ORF1ab/nsp6	16	L16L	ctC	ctT	47	47	AY.39	0.001161
ORF1ab/nsp6	16	L16L	ctC	ctT	47	47	B.1.177.60	0.010266
ORF1ab/nsp6	16	L16L	ctC	ctT	47	47	B.1.565	0.038088
ORF1ab/nsp6	16	L16L	ctC	ctT	45	45	B.1.595	0.011743
ORF1ab/nsp6	16	L16L	ctC	ctT	43	43	AY.75	0.002409
ORF1ab/nsp6	16	L16L	ctC	ctT	43	43	AY.9	0.002907
ORF1ab/nsp6	16	L16L	ctC	ctT	43	43	B.1.369	0.012265
ORF1ab/nsp6	16	L16L	ctC	ctT	41	41	B.1.258.17	0.004263
ORF1ab/nsp6	16	L16L	ctC	ctT	40	40	AY.119	0.001412
ORF1ab/nsp6	16	L16L	ctC	ctT	40	40	AY.20	0.001555
ORF1ab/nsp6	16	L16L	ctC	ctT	37	37	AY.47	0.001151
ORF1ab/nsp6	16	L16L	ctC	ctT	35	35	AY.64	0.020833
ORF1ab/nsp6	16	L16L	ctC	ctT	35	35	B.1.1.4	0.104167
ORF1ab/nsp6	16	L16L	ctC	ctT	35	35	B.1.160	0.001092
ORF1ab/nsp6	16	L16L	ctC	ctT	34	34	B.1.361	0.043814
ORF1ab/nsp6	16	L16L	ctC	ctT	33	33	B.1.177.81	0.006248
ORF1ab/nsp6	16	L16L	ctC	ctT	32	32	AY.30	0.012663
ORF1ab/nsp6	16	L16L	ctC	ctT	30	30	B.1.619	0.026132
ORF1ab/nsp6	16	L16L	ctC	ctT	29	29	B.1.427	0.001464
ORF1ab/nsp6	16	L16L	ctC	ctT	29	29	R.1	0.00261
ORF1ab/nsp6	16	L16L	ctC	ctT	27	28	B.1.596	0.002353
ORF1ab/nsp6	16	L16L	ctC	ctA	1	28	B.1.596	0.000087
ORF1ab/nsp6	16	L16L	ctC	ctT	27	27	AY.26	0.000764
ORF1ab/nsp6	16	L16L	ctC	ctT	25	25	AY.13	0.004024
ORF1ab/nsp6	16	L16L	ctC	ctT	25	25	P.1.14	0.001195
ORF1ab/nsp6	16	L16L	ctC	ctT	25	25	P.1.15	0.005809
ORF1ab/nsp6	16	L16L	ctC	ctT	24	24	B.1.618	0.096774
ORF1ab/nsp6	16	L16L	ctC	ctT	23	23	B.1.243	0.0016
ORF1ab/nsp6	16	L16L	ctC	ctT	23	23	B.1.635	0.403509
ORF1ab/nsp6	16	L16L	ctC	ctG	18	22	B.1.177.62	0.021454
ORF1ab/nsp6	16	L16L	ctC	ctT	4	22	B.1.177.62	0.004768
ORF1ab/nsp6	16	L16del	CTC	---	20	20	All	0.000004
ORF1ab/nsp6	16	L16L	ctC	ctT	20	20	AY.54	0.001907
ORF1ab/nsp6	16	L16F	Ctc	Ttc	19	19	All	0.000004
ORF1ab/nsp6	16	L16L	ctC	ctT	19	19	B.1.408	0.070111
ORF1ab/nsp6	16	L16L	ctC	ctT	19	19	B.1.549	0.136691
ORF1ab/nsp6	16	L16L	ctC	ctT	19	19	C.30	0.032815
ORF1ab/nsp6	16	L16L	ctC	ctT	18	18	AY.120	0.000669
ORF1ab/nsp6	16	L16L	ctC	ctT	18	18	B.1.221	0.001279
ORF1ab/nsp6	16	L16L	ctC	ctT	18	18	B.1.349	0.012866
ORF1ab/nsp6	16	L16L	ctC	ctT	17	17	AY.45	0.002069
ORF1ab/nsp6	16	L16L	ctC	ctT	17	17	B.1.617.1	0.002192
ORF1ab/nsp6	16	L16L	ctC	ctT	16	16	AY.46	0.001665
ORF1ab/nsp6	16	L16L	ctC	ctT	16	16	B.1.36	0.002334
ORF1ab/nsp6	16	L16L	ctC	ctT	15	15	AY.46.4	0.002468
ORF1ab/nsp6	16	L16L	ctC	ctT	15	15	B.1.1.306	0.006576
ORF1ab/nsp6	16	L16L	ctC	ctT	15	15	C.37.1	0.039267
ORF1ab/nsp6	16	L16L	ctC	ctT	14	14	B.1.1.348	0.011146
ORF1ab/nsp6	16	L16L	ctC	ctT	13	14	B.1.1.37	0.002507
ORF1ab/nsp6	16	L16L	ctC	ctA	1	14	B.1.1.37	0.000193
ORF1ab/nsp6	16	L16L	ctC	ctT	14	14	B.1.1.487	0.078212
ORF1ab/nsp6	16	L16L	ctC	ctT	14	14	Q.8	0.002309
ORF1ab/nsp6	16	L16L	ctC	ctT	13	13	AY.33	0.000868
ORF1ab/nsp6	16	L16L	ctC	ctT	13	13	B.1.1.159	0.060748
ORF1ab/nsp6	16	L16L	ctC	ctT	13	13	B.1.619.1	0.008339
ORF1ab/nsp6	16	L16L	ctC	ctT	11	12	AY.39.1	0.000436
ORF1ab/nsp6	16	L16L	CtC	TtA	1	12	AY.39.1	0.00004
ORF1ab/nsp6	16	L16L	ctC	ctT	12	12	C.36.3	0.006807
ORF1ab/nsp6	16	L16P	cTc	cCc	8	11	All	0.000002
ORF1ab/nsp6	16	L16P	cTC	cCT	3	11	All	0.000001
ORF1ab/nsp6	16	L16L	ctC	ctT	11	11	AY.4.5	0.001182
ORF1ab/nsp6	16	L16L	ctC	ctT	11	11	B.1.234	0.001451
ORF1ab/nsp6	16	L16L	ctC	ctT	11	11	B.1.575	0.003337
ORF1ab/nsp6	16	L16L	ctC	ctT	10	10	P.2	0.001866
ORF1ab/nsp6	16	L16L	ctC	ctT	9	9	AY.1	0.003562
ORF1ab/nsp6	16	L16L	ctC	ctT	9	9	B.1.1.222	0.001836
ORF1ab/nsp6	16	L16L	ctC	ctT	9	9	B.1.1.270	0.092784
ORF1ab/nsp6	16	L16L	ctC	ctT	9	9	B.1.525	0.001018
ORF1ab/nsp6	16	L16L	ctC	ctT	8	8	AY.106	0.002679
ORF1ab/nsp6	16	L16L	ctC	ctT	8	8	AY.5.3	0.002699
ORF1ab/nsp6	16	L16L	ctC	ctT	8	8	B.1.1.176	0.003515
ORF1ab/nsp6	16	L16L	ctC	ctT	8	8	B.1.1.294	0.010127
ORF1ab/nsp6	16	L16L	ctC	ctT	7	7	AY.23	0.000488
ORF1ab/nsp6	16	L16L	ctC	ctT	7	7	AY.75.1	0.001262
ORF1ab/nsp6	16	L16L	ctC	ctT	7	7	AY.87	0.005828
ORF1ab/nsp6	16	L16del	CTC	---	7	7	B.1.1.7	0.000006
ORF1ab/nsp6	16	L16L	ctC	ctT	7	7	B.1.380	0.046358
ORF1ab/nsp6	16	L16L	ctC	ctT	7	7	B.1.438.1	0.000751
ORF1ab/nsp6	16	L16L	ctC	ctT	7	7	B.1.475	1
ORF1ab/nsp6	16	L16L	ctC	ctT	7	7	B.1.597	0.032407
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	AY.110	0.000676
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	AY.121	0.000812
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	AY.34	0.000582
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	AY.81	0.011952
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	AY.9.1	0.000502
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	B.1.1.170	0.007481
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	B.1.1.291	0.004454
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	B.1.1.311	0.002149
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	B.1.177.43	0.008863
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	B.1.206	0.004894
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	B.1.210	0.012793
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	B.1.466.2	0.002347
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	B.1.628	0.002114
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	P.1.7	0.001916
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	Q.1	0.000758
ORF1ab/nsp6	16	L16L	ctC	ctT	6	6	Q.3	0.00087
ORF1ab/nsp6	16	L16H	cTc	cAc	4	5	All	0.000001
ORF1ab/nsp6	16	L16H	cTC	cAT	1	5	All	0
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	AY.100	0.00023
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	AY.111	0.000916
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	AY.113	0.000712
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	AY.4.2.1	0.000745
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	AY.42	0.000201
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	AY.61	0.000524
ORF1ab/nsp6	16	L16L	ctC	ctT	4	5	AY.84	0.00175
ORF1ab/nsp6	16	L16L	ctC	ctA	1	5	AY.84	0.000437
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	AY.99.2	0.000461
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	B.1.1.207	0.00591
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	B.1.1.284	0.000537
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	B.1.1.317	0.002058
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	B.1.1.434	0.001743
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	B.1.177.52	0.008787
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	B.1.362	0.007704
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	B.1.588	0.00455
ORF1ab/nsp6	16	L16L	ctC	ctT	5	5	C.36	0.004554
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	AY.14	0.000352
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	AY.15	0.008889
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	AY.16	0.001519
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	AY.24	0.001724
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	AY.27	0.000259
ORF1ab/nsp6	16	L16F	Ctc	Ttc	4	4	AY.4	0.000006
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	AY.4.4	0.001637
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	AY.79	0.004843
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	AY.98.1	0.000194
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	AY.99	0.004197
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	B.1.1.10	0.004459
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	B.1.1.189	0.006051
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	B.1.1.216	0.003562
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	B.1.111	0.0047
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	B.1.177.21	0.000306
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	B.1.241	0.003247
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	B.1.351.2	0.00121
ORF1ab/nsp6	16	L16L	ctC	ctT	4	4	B.1.561	0.001588
ORF1ab/nsp6	16	L16P	cTc	cCc	2	3		0.111111
ORF1ab/nsp6	16	L16I	Ctc	Atc	2	3		0.111111
ORF1ab/nsp6	16	L16I	CtC	AtT	1	3		0.055556
ORF1ab/nsp6	16	L16P	cTC	cCT	1	3		0.055556
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AD.2	0.000657
ORF1ab/nsp6	16	L16del1	cTc	c-c	2	3	All	0
ORF1ab/nsp6	16	L16del1	ctC	ct-	1	3	All	0
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.116	0.00086
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.16.1	0.00141
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.29.1	0.000662
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.3.1	0.000256
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.32	0.001597
ORF1ab/nsp6	16	L16del	CTC	---	3	3	AY.4	0.000005
ORF1ab/nsp6	16	L16L	ctC	ctT	2	3	AY.5.4	0.000553
ORF1ab/nsp6	16	L16L	ctC	ctA	1	3	AY.5.4	0.000277
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.53	0.000863
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.55	0.002752
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.7.1	0.000338
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.73	0.001996
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.74	0.000347
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.8	0.001818
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	AY.94	0.001328
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B	0.000383
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.1.1	0.00098
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.1.28	0.000934
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.1.304	0.008427
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.1.486	0.004732
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.1.525	0.016393
ORF1ab/nsp6	16	L16I	Ctc	Atc	3	3	B.1.1.7	0.000003
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.143	0.06383
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.177.24	0.003886
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.177.45	0.001144
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.214	0.010989
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.311	0.000824
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.36.17	0.001482
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.36.22	0.003623
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.366	0.014634
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.400	0.001287
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.470	0.004213
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.576	0.00272
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	B.1.586	0.032967
ORF1ab/nsp6	16	L16I	Ctc	Atc	3	3	B.1.617.2	0.000011
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	P.1.12	0.001452
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	P.1.17	0.000485
ORF1ab/nsp6	16	L16L	ctC	ctT	3	3	Q.4	0.001364
ORF1ab/nsp6	16	L16T	CTc	ACc	1	2		0.055556
ORF1ab/nsp6	16	L16T	CTC	ACT	1	2		0.055556
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	A.2.5	0.000998
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	A.21	0.00554
ORF1ab/nsp6	16	L16V	Ctc	Gtc	2	2	All	0
ORF1ab/nsp6	16	L16T	CTc	ACc	1	2	All	0
ORF1ab/nsp6	16	L16N	CTC	AAT	1	2	All	0
ORF1ab/nsp6	16	L16N	CTc	AAc	1	2	All	0
ORF1ab/nsp6	16	L16T	CTC	ACT	1	2	All	0
ORF1ab/nsp6	16	L16I	Ctc	Atc	2	2	AY.100	0.000092
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	AY.46.1	0.002053
ORF1ab/nsp6	16	L16F	Ctc	Ttc	2	2	AY.46.1	0.002053
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	AY.58	0.001815
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	AY.59	0.001059
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	AY.66	0.002139
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	AY.85	0.000854
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	AY.89	0.009804
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	AZ.3	0.00304
ORF1ab/nsp6	16	L16F	Ctc	Ttc	2	2	B.1	0.000018
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.135	0.00939
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.141	0.004024
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.153	0.002191
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.174	0.006757
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.228	0.006098
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.25	0.001137
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.269	0.002706
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.315	0.016949
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.318	0.000604
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.33	0.000842
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.432	0.002532
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.1.518	0.012658
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.139	0.001466
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.160.20	0.017857
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.177.4	0.000422
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.177.7	0.00033
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.177.73	0.001133
ORF1ab/nsp6	16	L16H	cTC	cAT	1	2	B.1.221	0.000071
ORF1ab/nsp6	16	L16I	Ctc	Atc	1	2	B.1.221	0.000071
ORF1ab/nsp6	16	L16I	CtC	AtT	1	2	B.1.221	0.000071
ORF1ab/nsp6	16	L16N	CTc	AAc	1	2	B.1.221	0.000071
ORF1ab/nsp6	16	L16N	CTC	AAT	1	2	B.1.221	0.000071
ORF1ab/nsp6	16	L16H	cTc	cAc	1	2	B.1.221	0.000071
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.236	0.004107
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.258.11	0.000793
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.282	0.029851
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.336	0.004878
ORF1ab/nsp6	16	L16L	ctC	ctT	1	2	B.1.367	0.000792
ORF1ab/nsp6	16	L16L	ctC	ctA	1	2	B.1.367	0.000792
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.420	0.020833
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.459	0.008163
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.462	0.014493
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.541	0.00885
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.564	0.000852
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.609	0.000959
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	B.1.625	0.004706
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	C.23	0.011628
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	D.2	0.00015
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	N.9	0.011905
ORF1ab/nsp6	16	L16del	CTC	---	2	2	P.1.15	0.000465
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	P.7	0.008734
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	U.3	0.007722
ORF1ab/nsp6	16	L16L	ctC	ctT	2	2	Z.1	0.00578
ORF1ab/nsp6	16	L16V	Ctc	Gtc	1	1		0.055556
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1		0.055556
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	A	0.000387
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	A.1	0.000282
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AE.2	0.058824
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AL.1	0.012987
ORF1ab/nsp6	16	L16Y	CTc	TAc	1	1	All	0
ORF1ab/nsp6	16	L16Q	cTC	cAA	1	1	All	0
ORF1ab/nsp6	16	L16V	Ctc	Gtc	1	1	AS.2	0.015625
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AU.3	0.00211
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AW.1	0.003049
ORF1ab/nsp6	16	L16P	cTC	cCT	1	1	AY.103	0.000006
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.104	0.001984
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.108	0.001103
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.114	0.000231
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.120.2.1	0.000498
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.21	0.001898
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.28	0.00189
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.34.1	0.00051
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.36	0.000148
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.38	0.000499
ORF1ab/nsp6	16	L16del1	cTc	c-c	1	1	AY.4	0.000002
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.41	0.000294
ORF1ab/nsp6	16	L16del	CTC	---	1	1	AY.43	0.000004
ORF1ab/nsp6	16	L16I	Ctc	Atc	1	1	AY.44	0.000006
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.46.5	0.000198
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.49	0.003195
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.52	0.000814
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.56	0.001605
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	AY.6	0.000041
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.60	0.000938
ORF1ab/nsp6	16	L16del1	ctC	ct-	1	1	AY.61	0.000105
ORF1ab/nsp6	16	L16Q	cTC	cAA	1	1	AY.62	0.000436
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.62	0.000436
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.65	0.000533
ORF1ab/nsp6	16	L16del	CTC	---	1	1	AY.66	0.00107
ORF1ab/nsp6	16	L16L	ctC	ctA	1	1	AY.67	0.000464
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.68	0.000274
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.69	0.000187
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.70	0.000209
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.78	0.001541
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.95	0.000761
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.96	0.002075
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AY.97	0.001701
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	AZ.2	0.000821
ORF1ab/nsp6	16	L16I	Ctc	Atc	1	1	B.1	0.000009
ORF1ab/nsp6	16	L16P	cTc	cCc	1	1	B.1	0.000009
ORF1ab/nsp6	16	L16del1	cTc	c-c	1	1	B.1	0.000009
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	B.1.1	0.000018
ORF1ab/nsp6	16	L16I	Ctc	Atc	1	1	B.1.1	0.000018
ORF1ab/nsp6	16	L16Y	CTc	TAc	1	1	B.1.1	0.000018
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.117	0.009709
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.157	0.000913
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	B.1.1.176	0.000439
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.192	0.002309
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.229	0.005747
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.234	0.012048
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.239	0.032258
ORF1ab/nsp6	16	L16P	cTc	cCc	1	1	B.1.1.25	0.000569
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.253	0.002506
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.255	0.00303
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.263	0.001558
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.277	0.000759
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.279	0.001121
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.297	0.002237
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.303	0.002762
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.307	0.002532
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.372	0.000689
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	B.1.1.376	0.005952
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.382	0.035714
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.388	0.045455
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.389	0.006061
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.39	0.00051
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.413	0.006897
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.420	0.001006
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.46	0.004367
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.464	0.001473
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.513	0.012346
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.57	0.011494
ORF1ab/nsp6	16	L16H	cTc	cAc	1	1	B.1.1.7	0.000001
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	B.1.1.7	0.000001
ORF1ab/nsp6	16	L16P	cTc	cCc	1	1	B.1.1.7	0.000001
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.1.70	0.000341
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.110.3	0.000718
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.113	0.015625
ORF1ab/nsp6	16	L16L	ctC	ctA	1	1	B.1.118	0.006711
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.12	0.008
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.126	0.001276
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.146	0.004237
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.160.30	0.002976
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.160.8	0.001289
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.162	0.005025
ORF1ab/nsp6	16	L16I	CtC	AtA	1	1	B.1.177	0.000013
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.11	0.001698
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.12	0.000152
ORF1ab/nsp6	16	L16del	CTC	---	1	1	B.1.177.15	0.000631
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.16	0.000664
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.17	0.000821
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.26	0.006993
ORF1ab/nsp6	16	L16del	CTC	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.44	0.000519
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.50	0.004695
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.57	0.000281
ORF1ab/nsp6	16	L16P	cTc	cCc	1	1	B.1.177.60	0.000218
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.69	0.001484
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.75	0.001041
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.77	0.000726
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.83	0.001481
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.85	0.005435
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.177.86	0.000183
ORF1ab/nsp6	16	L16del	CTC	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp6	16	L16P	cTc	cCc	1	1	B.1.2	0.000009
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.201	0.005682
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.213	0.014925
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.220	0.01087
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.221.1	0.002907
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.223	0.002778
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.232	0.000537
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.237	0.004975
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.239	0.001221
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	B.1.258	0.000067
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.279	0.000514
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.284	0.013158
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.298	0.002114
ORF1ab/nsp6	16	L16P	cTc	cCc	1	1	B.1.311	0.000275
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.325	0.006897
ORF1ab/nsp6	16	L16H	cTc	cAc	1	1	B.1.332	0.003497
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.333	0.010526
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.338	0.008621
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.350	0.002933
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.36.24	0.006173
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.36.27	0.000763
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.36.37	0.002778
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.389	0.001002
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.390	0.010638
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.402	0.009804
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.409	0.000781
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.432	0.011236
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.450	0.011364
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.456	0.003268
ORF1ab/nsp6	16	L16H	cTc	cAc	1	1	B.1.459	0.004082
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.468	0.005714
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.469	0.00361
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.471	0.002732
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.501	0.007353
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.502	0.052632
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.524	0.001406
ORF1ab/nsp6	16	L16I	Ctc	Atc	1	1	B.1.526	0.000024
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.540	0.009709
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.546	0.003704
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.551	0.00129
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.560	0.00463
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.562	0.018519
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.567	0.003333
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.580	0.004065
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.593	0.01087
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	B.1.595	0.000261
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.599	0.00365
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	B.1.611	0.04
ORF1ab/nsp6	16	L16P	cTC	cCT	1	1	B.1.617.2	0.000004
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	B.1.617.2	0.000004
ORF1ab/nsp6	16	L16del	CTC	---	1	1	B.1.621	0.000089
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.621.1	0.000506
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.627	0.00202
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.634	0.003425
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.8	0.001972
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.1.93	0.000934
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.3	0.000831
ORF1ab/nsp6	16	L16F	Ctc	Ttc	1	1	B.40	0.000364
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	B.40	0.000364
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	L.3	0.003546
ORF1ab/nsp6	16	L16del	CTC	---	1	1	N.4	0.004255
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	P.1.16	0.000374
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	P.1.4	0.000977
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	P.1.9	0.004808
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	P.3	0.001595
ORF1ab/nsp6	16	L16del	CTC	---	1	1	Q.1	0.000126
ORF1ab/nsp6	16	L16L	ctC	ctT	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.