CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 153 | Y153C | Y3722C | nonsyn | tAt | tGt | 2736 | 2736 | 1 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153Y | Y3722Y | syn | taT | taC | 100 | 100 | 1 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153del | Y3722del | del | TAT | --- | 38 | 38 | 1 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153H | Y3722H | nonsyn | Tat | Cat | 21 | 21 | 1 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153F | Y3722F | nonsyn | tAt | tTt | 12 | 12 | 1 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153N | Y3722N | nonsyn | Tat | Aat | 8 | 5 | 0.625 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153N | Y3722N | nonsyn | TaT | AaC | 8 | 3 | 0.375 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153S | Y3722S | nonsyn | tAt | tCt | 6 | 5 | 0.833333 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153S | Y3722S | nonsyn | TAt | AGt | 6 | 1 | 0.166667 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153X | Y3722X | nonsyn | taT | taA | 5 | 5 | 1 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153del1 | Y3722del1 | del | taT | ta- | 5 | 3 | 0.6 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153del1 | Y3722del1 | del | tAt | t-t | 5 | 2 | 0.4 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153I | Y3722I | nonsyn | TAt | ATt | 2 | 2 | 1 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153E | Y3722E | nonsyn | TaT | GaG | 2 | 2 | 1 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153Q | Y3722Q | nonsyn | TaT | CaA | 1 | 1 | 1 | 11429-11431 |
ORF1ab/nsp6 | 153 | Y153del2 | Y3722del2 | del | TAt | --t | 1 | 1 | 1 | 11429-11431 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2736 | 2736 | All | 0.000523 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 925 | 925 | B.1.1.214 | 0.051298 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 613 | 613 | B.1.214.2 | 0.367506 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 165 | 165 | B.1.427 | 0.008332 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 112 | 112 | B.1.214.3 | 0.8 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 100 | 100 | All | 0.000019 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 72 | 72 | B.1 | 0.000659 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 65 | 65 | AY.4 | 0.000101 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 58 | 58 | B.1.2 | 0.000511 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 57 | 57 | B.1.635 | 1 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 42 | 42 | B.1.1.222 | 0.008568 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 41 | 41 | AY.44 | 0.00025 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 38 | 38 | All | 0.000007 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 37 | 37 | B.1.617.2 | 0.000139 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 35 | 35 | AY.103 | 0.000217 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 31 | 31 | B.1.36 | 0.004523 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 23 | 23 | B.1.1 | 0.000417 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 21 | 21 | All | 0.000004 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 20 | 20 | AY.43 | 0.000089 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 19 | 19 | C.35 | 0.014706 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 18 | 18 | AY.116.1 | 0.005606 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 18 | 18 | B.1.210 | 0.03838 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 18 | 18 | B.1.36.8 | 0.018 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 18 | 18 | B.1.633 | 0.75 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 16 | 16 | AY.29.1 | 0.003528 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 16 | 16 | AY.4.2 | 0.000347 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 15 | 15 | AY.100 | 0.00069 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 14 | 14 | B | 0.001789 |
ORF1ab/nsp6 | 153 | Y153F | tAt | tTt | 12 | 12 | All | 0.000002 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 10 | 10 | B.1.471 | 0.027322 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 10 | 10 | B.1.623 | 0.005365 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 9 | 9 | B.1.214 | 0.032967 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 9 | 9 | B.1.398 | 0.026786 |
ORF1ab/nsp6 | 153 | Y153N | Tat | Aat | 5 | 8 | All | 0.000001 |
ORF1ab/nsp6 | 153 | Y153N | TaT | AaC | 3 | 8 | All | 0.000001 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 8 | 8 | B.1.1.216 | 0.007124 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 8 | 8 | B.1.177.57 | 0.002248 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 8 | 8 | B.1.575 | 0.002427 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp6 | 153 | Y153S | tAt | tCt | 5 | 6 | All | 0.000001 |
ORF1ab/nsp6 | 153 | Y153S | TAt | AGt | 1 | 6 | All | 0 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp6 | 153 | Y153N | Tat | Aat | 3 | 5 | 0.166667 | |
ORF1ab/nsp6 | 153 | Y153N | TaT | AaC | 2 | 5 | 0.111111 | |
ORF1ab/nsp6 | 153 | Y153X | taT | taA | 5 | 5 | All | 0.000001 |
ORF1ab/nsp6 | 153 | Y153del1 | taT | ta- | 3 | 5 | All | 0.000001 |
ORF1ab/nsp6 | 153 | Y153del1 | tAt | t-t | 2 | 5 | All | 0 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp6 | 153 | Y153S | tAt | tCt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 5 | 5 | B.1.214.1 | 0.1 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 5 | 5 | B.1.367 | 0.003962 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 4 | 4 | B.1.1.310 | 0.060606 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp6 | 153 | Y153F | tAt | tTt | 3 | 3 | 0.166667 | |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 3 | 3 | B.1.1.344 | 0.032258 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 3 | 3 | B.1.1.57 | 0.034483 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 153 | Y153X | taT | taA | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 153 | Y153I | TAt | ATt | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 153 | Y153E | TaT | GaG | 2 | 2 | All | 0 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | B.1.1.15 | 0.027027 |
ORF1ab/nsp6 | 153 | Y153F | tAt | tTt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 2 | 2 | B.1.329 | 0.001215 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp6 | 153 | Y153F | tAt | tTt | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | B.1.541 | 0.00885 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp6 | 153 | Y153I | TAt | ATt | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 153 | Y153E | TaT | GaG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp6 | 153 | Y153del2 | TAt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 153 | Y153Q | TaT | CaA | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp6 | 153 | Y153X | taT | taA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 153 | Y153S | TAt | AGt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 153 | Y153X | taT | taA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 153 | Y153Q | TaT | CaA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 153 | Y153X | taT | taA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 153 | Y153del1 | tAt | t-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 153 | Y153del1 | taT | ta- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 153 | Y153N | TaT | AaC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 153 | Y153F | tAt | tTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 153 | Y153F | tAt | tTt | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp6 | 153 | Y153del1 | taT | ta- | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp6 | 153 | Y153N | Tat | Aat | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.1.458 | 0.041667 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp6 | 153 | Y153F | tAt | tTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 153 | Y153del2 | TAt | --t | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 153 | Y153del1 | tAt | t-t | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp6 | 153 | Y153I | TAt | ATt | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp6 | 153 | Y153N | Tat | Aat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 153 | Y153F | tAt | tTt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp6 | 153 | Y153del1 | taT | ta- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp6 | 153 | Y153H | Tat | Cat | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp6 | 153 | Y153F | tAt | tTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp6 | 153 | Y153E | TaT | GaG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp6 | 153 | Y153C | tAt | tGt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 153 | Y153Y | taT | taC | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp6 | 153 | Y153del | TAT | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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