CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 149 & Codon = gtC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6149V149VV3718VsyngtTgtC2912690.92439911417-11419

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6149V149VgtTgtC269291All0.000051
ORF1ab/nsp6149V149VgtTgtC136136AY.420.005471
ORF1ab/nsp6149V149VgtTgtC5050AY.46.40.008225
ORF1ab/nsp6149V149VgtTgtC116AY.440.000006
ORF1ab/nsp6149V149VgtTgtC1012B.1.1.70.000009
ORF1ab/nsp6149V149VgtTgtC99C.370.001045
ORF1ab/nsp6149V149VgtTgtC88AY.1030.00005
ORF1ab/nsp6149V149VgtTgtC67B.1.617.20.000023
ORF1ab/nsp6149V149VgtTgtC66AY.430.000027
ORF1ab/nsp6149V149VgtTgtC66AY.460.000624
ORF1ab/nsp6149V149VgtTgtC55AY.1020.000133
ORF1ab/nsp6149V149VgtTgtC33AY.200.000117
ORF1ab/nsp6149V149VgtTgtC23AY.30.00002
ORF1ab/nsp6149V149VgtTgtC33AY.390.000074
ORF1ab/nsp6149V149VgtTgtC33AY.40.000005
ORF1ab/nsp6149V149VgtTgtC33AY.980.000237
ORF1ab/nsp6149V149VgtTgtC22AY.46.60.000144
ORF1ab/nsp6149V149VgtTgtC22AY.50.000041
ORF1ab/nsp6149V149VgtTgtC22AY.700.000417
ORF1ab/nsp6149V149VgtTgtC12B.1.10.000018
ORF1ab/nsp6149V149VgtTgtC22P.10.000032
ORF1ab/nsp6149V149VgtTgtC11AY.1200.000037
ORF1ab/nsp6149V149VgtTgtC11AY.250.000006
ORF1ab/nsp6149V149VgtTgtC11AY.4.20.000022
ORF1ab/nsp6149V149VgtTgtC11AY.98.10.000048
ORF1ab/nsp6149V149VgtTgtC11B0.000128
ORF1ab/nsp6149V149VgtTgtC11B.1.1.10.000327
ORF1ab/nsp6149V149VgtTgtC11B.1.1.5190.00004
ORF1ab/nsp6149V149VgtTgtC11B.1.20.000009
ORF1ab/nsp6149V149VgtTgtC11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.