CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 149 & Codon = gCt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6149V149AV3718AnonsyngTtgCt2961002960850.99994911417-11419

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6149V149AgTtgCt296085296100All0.05663
ORF1ab/nsp6149V149AgTtgCt3502335023AY.260.991507
ORF1ab/nsp6149V149AgTtgCt3108431090AY.470.966873
ORF1ab/nsp6149V149AgTtgCt2963129637B.1.617.20.111573
ORF1ab/nsp6149V149AgTtgCt2336923369AY.9.20.858334
ORF1ab/nsp6149V149AgTtgCt1676616766AY.750.939272
ORF1ab/nsp6149V149AgTtgCt1543115431AY.270.998706
ORF1ab/nsp6149V149AgTtgCt1460914609AY.90.987495
ORF1ab/nsp6149V149AgTtgCt1189711897AY.9.10.996065
ORF1ab/nsp6149V149AgTtgCt1124611246AY.140.989791
ORF1ab/nsp6149V149AgTtgCt1004110041AY.540.95738
ORF1ab/nsp6149V149AgTtgCt94289429AY.610.987846
ORF1ab/nsp6149V149AgTtgCt82278227AY.740.951428
ORF1ab/nsp6149V149AgTtgCt58985898AY.130.949453
ORF1ab/nsp6149V149AgTtgCt51795179AY.75.10.933826
ORF1ab/nsp6149V149AgTtgCt51705170AY.690.965092
ORF1ab/nsp6149V149AgTtgCt46774677AY.700.975188
ORF1ab/nsp6149V149AgTtgCt32423242AY.530.932145
ORF1ab/nsp6149V149AgTtgCt29782978AY.370.941214
ORF1ab/nsp6149V149AgTtgCt29602960AY.680.810293
ORF1ab/nsp6149V149AgTtgCt28012801AY.20.997507
ORF1ab/nsp6149V149AgTtgCt24742474AY.160.939256
ORF1ab/nsp6149V149AgTtgCt24572457AY.300.972299
ORF1ab/nsp6149V149AgTtgCt24552455AY.630.94971
ORF1ab/nsp6149V149AgTtgCt22632263AY.240.975431
ORF1ab/nsp6149V149AgTtgCt20952095AY.620.912854
ORF1ab/nsp6149V149AgTtgCt20022002AY.710.951069
ORF1ab/nsp6149V149AgTtgCt19691969AY.670.914113
ORF1ab/nsp6149V149AgTtgCt17821782AY.650.949893
ORF1ab/nsp6149V149AgTtgCt17201720AY.380.858712
ORF1ab/nsp6149V149AgTtgCt17131713AY.100.90779
ORF1ab/nsp6149V149AgTtgCt16151615AY.80.978788
ORF1ab/nsp6149V149AgTtgCt15111511AY.590.800318
ORF1ab/nsp6149V149AgTtgCt15031503AY.640.894643
ORF1ab/nsp6149V149AgTtgCt14301430AY.16.10.671992
ORF1ab/nsp6149V149AgTtgCt14141414AY.570.927822
ORF1ab/nsp6149V149AgTtgCt12111211AY.500.968026
ORF1ab/nsp6149V149AgTtgCt10741074AY.510.976364
ORF1ab/nsp6149V149AgTtgCt998998AY.600.93621
ORF1ab/nsp6149V149AgTtgCt927927AY.400.893925
ORF1ab/nsp6149V149AgTtgCt920920AY.520.749186
ORF1ab/nsp6149V149AgTtgCt886886AY.730.589488
ORF1ab/nsp6149V149AgTtgCt877877AY.660.937968
ORF1ab/nsp6149V149AgTtgCt798798AY.580.724138
ORF1ab/nsp6149V149AgTtgCt726726AY.430.003217
ORF1ab/nsp6149V149AgTtgCt718718AY.720.976871
ORF1ab/nsp6149V149AgTtgCt696696AY.440.004236
ORF1ab/nsp6149V149AgTtgCt684684AY.110.915663
ORF1ab/nsp6149V149AgTtgCt626626B.10.005734
ORF1ab/nsp6149V149AgTtgCt617617AY.550.566055
ORF1ab/nsp6149V149AgTtgCt549549AY.190.625998
ORF1ab/nsp6149V149AgTtgCt506506AY.9.2.11
ORF1ab/nsp6149V149AgTtgCt498498AY.280.941399
ORF1ab/nsp6149V149AgTtgCt465465AY.560.746388
ORF1ab/nsp6149V149AgTtgCt446446AY.150.991111
ORF1ab/nsp6149V149AgTtgCt292292AY.480.135814
ORF1ab/nsp6149V149AgTtgCt276276AY.490.881789
ORF1ab/nsp6149V149AgTtgCt253253AY.390.006252
ORF1ab/nsp6149V149AgTtgCt154154AY.250.000926
ORF1ab/nsp6149V149AgTtgCt148149AY.1030.000919
ORF1ab/nsp6149V149AgTtgCt132132AY.200.00513
ORF1ab/nsp6149V149AgTtgCt110110AY.1170.009297
ORF1ab/nsp6149V149AgTtgCt109109AY.980.00861
ORF1ab/nsp6149V149AgTtgCt103103AY.1100.011607
ORF1ab/nsp6149V149AgTtgCt9696AY.180.969697
ORF1ab/nsp6149V149AgTtgCt9090AY.170.737705
ORF1ab/nsp6149V149AgTtgCt8383AY.1130.011818
ORF1ab/nsp6149V149AgTtgCt8282AY.1050.052733
ORF1ab/nsp6149V149AgTtgCt7474AY.450.009005
ORF1ab/nsp6149V149AgTtgCt5353AY.210.100569
ORF1ab/nsp6149V149AgTtgCt5353AY.310.981481
ORF1ab/nsp6149V149AgTtgCt5353B.1.10.000961
ORF1ab/nsp6149V149AgTtgCt5050AY.98.10.002422
ORF1ab/nsp6149V149AgTtgCt4747AY.30.000467
ORF1ab/nsp6149V149AgTtgCt4545AY.120.20.057841
ORF1ab/nsp6149V149AgTtgCt4444AY.1180.002757
ORF1ab/nsp6149V149AgTtgCt4444AY.1210.005954
ORF1ab/nsp6149V149AgTtgCt4343AY.230.002999
ORF1ab/nsp6149V149AgTtgCt4343AY.320.022897
ORF1ab/nsp6149V149AgTtgCt4343B0.005496
ORF1ab/nsp6149V149AgTtgCt4343B.1.6090.020614
ORF1ab/nsp6149V149AgTtgCt4040AY.860.033195
ORF1ab/nsp6149V149AgTtgCt4040B.1.36.290.020693
ORF1ab/nsp6149V149AgTtgCt3939AY.330.002604
ORF1ab/nsp6149V149AgTtgCt3838AY.770.042841
ORF1ab/nsp6149V149AgTtgCt3838AY.930.010377
ORF1ab/nsp6149V149AgTtgCt3737AY.46.20.023507
ORF1ab/nsp6149V149AgTtgCt3535AY.4.2.10.005215
ORF1ab/nsp6149V149AgTtgCt3232AY.1000.001472
ORF1ab/nsp6149V149AgTtgCt3030B.1.1770.000395
ORF1ab/nsp6149V149AgTtgCt3030N.100.882353
ORF1ab/nsp6149V149AgTtgCt2929B.1.20.000255
ORF1ab/nsp6149V149AgTtgCt2727AY.460.00281
ORF1ab/nsp6149V149AgTtgCt2626AY.39.10.00103
ORF1ab/nsp6149V149AgTtgCt2525AY.5.30.008435
ORF1ab/nsp6149V149AgTtgCt2525AY.5.40.006918
ORF1ab/nsp6149V149AgTtgCt2323B.1.5760.020852
ORF1ab/nsp6149V149AgTtgCt2323C.360.020947
ORF1ab/nsp6149V149AgTtgCt2020AY.1020.00053
ORF1ab/nsp6149V149AgTtgCt2020AY.350.004661
ORF1ab/nsp6149V149AgTtgCt2020AY.780.030817
ORF1ab/nsp6149V149AgTtgCt2020B.1.1.2160.017809
ORF1ab/nsp6149V149AgTtgCt1919AY.1140.004391
ORF1ab/nsp6149V149AgTtgCt1919AY.1190.000671
ORF1ab/nsp6149V149AgTtgCt1919AY.420.000764
ORF1ab/nsp6149V149AgTtgCt1818AY.10.007123
ORF1ab/nsp6149V149AgTtgCt1818AY.410.005291
ORF1ab/nsp6149V149AgTtgCt1818AY.880.015915
ORF1ab/nsp6149V149AgTtgCt1717AY.40.000026
ORF1ab/nsp6149V149AgTtgCt1717AY.50.000351
ORF1ab/nsp6149V149AgTtgCt1616AY.1060.005358
ORF1ab/nsp6149V149AgTtgCt1616AY.850.006835
ORF1ab/nsp6149V149AgTtgCt1616AY.910.011687
ORF1ab/nsp6149V149AgTtgCt1616AY.950.012177
ORF1ab/nsp6149V149AgTtgCt1616B.1.2140.058608
ORF1ab/nsp6149V149AgTtgCt1616P.10.000252
ORF1ab/nsp6149V149AgTtgCt1515AY.1160.004302
ORF1ab/nsp6149V149AgTtgCt1515B.1.617.10.001934
ORF1ab/nsp6149V149AgTtgCt1414AY.870.011657
ORF1ab/nsp6149V149AgTtgCt1313AY.46.60.000939
ORF1ab/nsp6149V149AgTtgCt1212AY.1200.000446
ORF1ab/nsp6149V149AgTtgCt1212AY.290.000189
ORF1ab/nsp6149V149AgTtgCt1212AY.810.023904
ORF1ab/nsp6149V149AgTtgCt1212AY.920.003447
ORF1ab/nsp6149V149AgTtgCt1111AY.1080.012128
ORF1ab/nsp6149V149AgTtgCt1111AY.900.007529
ORF1ab/nsp6149V149AgTtgCt1010AY.7.10.001127
ORF1ab/nsp6149V149AgTtgCt1010B.1.4620.072464
ORF1ab/nsp6149V149AgTtgCt99AY.120.002845
ORF1ab/nsp6149V149AgTtgCt99AY.46.10.00924
ORF1ab/nsp6149V149AgTtgCt89AY.840.0035
ORF1ab/nsp6149V149AgTtgCt99B.1.1.2220.001836
ORF1ab/nsp6149V149AgTtgCt99B.1.177.730.005096
ORF1ab/nsp6149V149AgTtgCt88B.1.1.330.003367
ORF1ab/nsp6149V149AgTtgCt88B.1.36.80.008
ORF1ab/nsp6149V149AgTtgCt77B.1.5950.001827
ORF1ab/nsp6149V149AgTtgCt66AY.1090.004438
ORF1ab/nsp6149V149AgTtgCt66AY.340.000582
ORF1ab/nsp6149V149AgTtgCt66AY.7.20.003356
ORF1ab/nsp6149V149AgTtgCt55AY.4.20.000108
ORF1ab/nsp6149V149AgTtgCt55AY.760.024155
ORF1ab/nsp6149V149AgTtgCt55AY.99.20.000461
ORF1ab/nsp6149V149AgTtgCt55B.1.1.1210.012136
ORF1ab/nsp6149V149AgTtgCt55B.1.1.70.000004
ORF1ab/nsp6149V149AgTtgCt55B.1.360.00073
ORF1ab/nsp6149V149AgTtgCt55B.1.617.30.014925
ORF1ab/nsp6149V149AgTtgCt44AY.1040.007937
ORF1ab/nsp6149V149AgTtgCt44AY.220.008368
ORF1ab/nsp6149V149AgTtgCt44AY.70.000784
ORF1ab/nsp6149V149AgTtgCt44AY.820.005427
ORF1ab/nsp6149V149AgTtgCt44AY.99.10.006211
ORF1ab/nsp6149V149AgTtgCt44B.1.3500.01173
ORF1ab/nsp6149V149AgTtgCt44B.1.4650.015209
ORF1ab/nsp6149V149AgTtgCt33AY.1010.001471
ORF1ab/nsp6149V149AgTtgCt33AY.116.10.000934
ORF1ab/nsp6149V149AgTtgCt33AY.790.003632
ORF1ab/nsp6149V149AgTtgCt33AY.940.001328
ORF1ab/nsp6149V149AgTtgCt33N.40.012766
ORF1ab/nsp6149V149AgTtgCt22A0.000774
ORF1ab/nsp6149V149AgTtgCt22A.20.001324
ORF1ab/nsp6149V149AgTtgCt22AY.360.000296
ORF1ab/nsp6149V149AgTtgCt22AY.800.002257
ORF1ab/nsp6149V149AgTtgCt22AY.830.003448
ORF1ab/nsp6149V149AgTtgCt22AY.960.004149
ORF1ab/nsp6149V149AgTtgCt22B.1.1.5180.012658
ORF1ab/nsp6149V149AgTtgCt22B.1.1570.00597
ORF1ab/nsp6149V149AgTtgCt22B.1.2210.000142
ORF1ab/nsp6149V149AgTtgCt22B.1.2470.029851
ORF1ab/nsp6149V149AgTtgCt22B.1.5300.014286
ORF1ab/nsp6149V149AgTtgCt22B.1.6040.034483
ORF1ab/nsp6149V149AgTtgCt22B.1.6230.001073
ORF1ab/nsp6149V149AgTtgCt110.055556
ORF1ab/nsp6149V149AgTtgCt11AY.1110.000183
ORF1ab/nsp6149V149AgTtgCt11AY.120.10.000321
ORF1ab/nsp6149V149AgTtgCt11AY.34.10.00051
ORF1ab/nsp6149V149AgTtgCt11AY.4.40.000409
ORF1ab/nsp6149V149AgTtgCt11AY.60.000041
ORF1ab/nsp6149V149AgTtgCt11AY.970.001701
ORF1ab/nsp6149V149AgTtgCt11AY.990.001049
ORF1ab/nsp6149V149AgTtgCt11B.1.1.10.000327
ORF1ab/nsp6149V149AgTtgCt11B.1.1.1230.017857
ORF1ab/nsp6149V149AgTtgCt11B.1.1.2200.001859
ORF1ab/nsp6149V149AgTtgCt11B.1.1.2310.003096
ORF1ab/nsp6149V149AgTtgCt11B.1.1.280.000311
ORF1ab/nsp6149V149AgTtgCt11B.1.1.2940.001266
ORF1ab/nsp6149V149AgTtgCt11B.1.1.3060.000438
ORF1ab/nsp6149V149AgTtgCt11B.1.1.3260.001761
ORF1ab/nsp6149V149AgTtgCt11B.1.1.4320.001266
ORF1ab/nsp6149V149AgTtgCt11B.1.1.4480.002033
ORF1ab/nsp6149V149AgTtgCt11B.1.1.5150.02
ORF1ab/nsp6149V149AgTtgCt11B.1.1.5190.00004
ORF1ab/nsp6149V149AgTtgCt11B.1.1600.000031
ORF1ab/nsp6149V149AgTtgCt11B.1.177.40.000211
ORF1ab/nsp6149V149AgTtgCt11B.1.2080.04
ORF1ab/nsp6149V149AgTtgCt11B.1.2350.002519
ORF1ab/nsp6149V149AgTtgCt11B.1.2410.000812
ORF1ab/nsp6149V149AgTtgCt11B.1.2600.003344
ORF1ab/nsp6149V149AgTtgCt11B.1.3050.002151
ORF1ab/nsp6149V149AgTtgCt11B.1.3360.002439
ORF1ab/nsp6149V149AgTtgCt11B.1.4000.000429
ORF1ab/nsp6149V149AgTtgCt11B.1.4090.000781
ORF1ab/nsp6149V149AgTtgCt11B.1.4290.000024
ORF1ab/nsp6149V149AgTtgCt11B.1.4560.003268
ORF1ab/nsp6149V149AgTtgCt11B.1.4590.004082
ORF1ab/nsp6149V149AgTtgCt11B.1.466.20.000391
ORF1ab/nsp6149V149AgTtgCt11B.1.4690.00361
ORF1ab/nsp6149V149AgTtgCt11B.1.4740.001901
ORF1ab/nsp6149V149AgTtgCt11B.1.5260.000024
ORF1ab/nsp6149V149AgTtgCt11B.1.5960.000087
ORF1ab/nsp6149V149AgTtgCt11B.1.6190.000871
ORF1ab/nsp6149V149AgTtgCt11B.1.619.10.000641
ORF1ab/nsp6149V149AgTtgCt11B.1.6290.013333
ORF1ab/nsp6149V149AgTtgCt11B.550.00295
ORF1ab/nsp6149V149AgTtgCt11C.170.055556
ORF1ab/nsp6149V149AgTtgCt11P.1.120.000484
ORF1ab/nsp6149V149AgTtgCt11P.1.170.000162
ORF1ab/nsp6149V149AgTtgCt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.