CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 139

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6139V139VV3708VsyngtGgtT14799560.64638311387-11389
ORF1ab/nsp6139V139VV3708VsyngtGgtA14795210.35226511387-11389
ORF1ab/nsp6139V139VV3708VsyngtGgtC147920.0013522711387-11389
ORF1ab/nsp6139V139LV3708LnonsynGtgTtg1091060.97247711387-11389
ORF1ab/nsp6139V139LV3708LnonsynGtgCtg10930.027522911387-11389
ORF1ab/nsp6139V139MV3708MnonsynGtgAtg8383111387-11389
ORF1ab/nsp6139V139AV3708AnonsyngTggCg6363111387-11389
ORF1ab/nsp6139V139delV3708deldelGTG---4242111387-11389
ORF1ab/nsp6139V139GV3708GnonsyngTggGg19180.94736811387-11389
ORF1ab/nsp6139V139GV3708GnonsyngTGgGT1910.052631611387-11389
ORF1ab/nsp6139V139EV3708EnonsyngTggAg55111387-11389
ORF1ab/nsp6139V139del1V3708del1delgTgg-g22111387-11389
ORF1ab/nsp6139V139DV3708DnonsyngTGgAC11111387-11389
ORF1ab/nsp6139V139SV3708SnonsynGTGTCA11111387-11389

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6139V139VgtGgtT9561479All0.000183
ORF1ab/nsp6139V139VgtGgtA5211479All0.0001
ORF1ab/nsp6139V139VgtGgtC21479All0
ORF1ab/nsp6139V139VgtGgtT752752AY.590.398305
ORF1ab/nsp6139V139VgtGgtA216220AY.440.001315
ORF1ab/nsp6139V139VgtGgtT4220AY.440.000024
ORF1ab/nsp6139V139VgtGgtA137144AY.40.000213
ORF1ab/nsp6139V139VgtGgtT7144AY.40.000011
ORF1ab/nsp6139V139LGtgTtg106109All0.00002
ORF1ab/nsp6139V139LGtgCtg3109All0.000001
ORF1ab/nsp6139V139MGtgAtg8383All0.000016
ORF1ab/nsp6139V139VgtGgtT3773B.1.1.70.000033
ORF1ab/nsp6139V139VgtGgtA3673B.1.1.70.000032
ORF1ab/nsp6139V139AgTggCg6363All0.000012
ORF1ab/nsp6139V139VgtGgtT4949B.1.243.20.710145
ORF1ab/nsp6139V139delGTG---4242All0.000008
ORF1ab/nsp6139V139VgtGgtT2633B.1.617.20.000098
ORF1ab/nsp6139V139VgtGgtA733B.1.617.20.000026
ORF1ab/nsp6139V139AgTggCg2929AY.40.000045
ORF1ab/nsp6139V139MGtgAtg2828AY.1030.000174
ORF1ab/nsp6139V139VgtGgtA2121B.1.5260.000494
ORF1ab/nsp6139V139LGtgTtg1920B.1.1.70.000017
ORF1ab/nsp6139V139LGtgCtg120B.1.1.70.000001
ORF1ab/nsp6139V139GgTggGg1819All0.000003
ORF1ab/nsp6139V139GgTGgGT119All0
ORF1ab/nsp6139V139LGtgTtg1919B.1.5960.001656
ORF1ab/nsp6139V139MGtgAtg1515AY.7.10.001691
ORF1ab/nsp6139V139delGTG---1414B.1.1.70.000013
ORF1ab/nsp6139V139VgtGgtA1414B.1.1.980.259259
ORF1ab/nsp6139V139VgtGgtA813B.1.20.00007
ORF1ab/nsp6139V139VgtGgtT313B.1.20.000026
ORF1ab/nsp6139V139VgtGgtC213B.1.20.000018
ORF1ab/nsp6139V139LGtgTtg1212B.1.617.20.000045
ORF1ab/nsp6139V139VgtGgtA1011AY.1030.000062
ORF1ab/nsp6139V139VgtGgtT111AY.1030.000006
ORF1ab/nsp6139V139GgTggGg1111AY.40.000017
ORF1ab/nsp6139V139VgtGgtA1111AY.4.50.001182
ORF1ab/nsp6139V139LGtgTtg1010AY.40.000016
ORF1ab/nsp6139V139VgtGgtT59AY.250.00003
ORF1ab/nsp6139V139VgtGgtA49AY.250.000024
ORF1ab/nsp6139V139VgtGgtT99B.1.10.000163
ORF1ab/nsp6139V139LGtgTtg88AY.9.20.000294
ORF1ab/nsp6139V139VgtGgtA78B.10.000064
ORF1ab/nsp6139V139VgtGgtT18B.10.000009
ORF1ab/nsp6139V139VgtGgtT78B.1.2430.000487
ORF1ab/nsp6139V139VgtGgtA18B.1.2430.00007
ORF1ab/nsp6139V139VgtGgtT47AY.750.000224
ORF1ab/nsp6139V139VgtGgtA37AY.750.000168
ORF1ab/nsp6139V139MGtgAtg77B.1.1.70.000006
ORF1ab/nsp6139V139VgtGgtT66AY.270.000388
ORF1ab/nsp6139V139VgtGgtA36AY.430.000013
ORF1ab/nsp6139V139VgtGgtT36AY.430.000013
ORF1ab/nsp6139V139MGtgAtg66B.1.617.20.000023
ORF1ab/nsp6139V139EgTggAg55All0.000001
ORF1ab/nsp6139V139VgtGgtA55AY.1060.001674
ORF1ab/nsp6139V139LGtgTtg55AY.250.00003
ORF1ab/nsp6139V139AgTggCg55AY.98.10.000242
ORF1ab/nsp6139V139MGtgAtg55B.1.5250.000566
ORF1ab/nsp6139V139MGtgAtg44AY.40.000006
ORF1ab/nsp6139V139VgtGgtT44AY.760.019324
ORF1ab/nsp6139V139AgTggCg44B.1.1.70.000004
ORF1ab/nsp6139V139MGtgAtg33AY.1020.00008
ORF1ab/nsp6139V139delGTG---33AY.250.000018
ORF1ab/nsp6139V139AgTggCg33AY.390.000074
ORF1ab/nsp6139V139VgtGgtT23AY.39.10.000079
ORF1ab/nsp6139V139VgtGgtA13AY.39.10.00004
ORF1ab/nsp6139V139delGTG---33AY.40.000005
ORF1ab/nsp6139V139LGtgTtg33AY.430.000013
ORF1ab/nsp6139V139delGTG---33AY.430.000013
ORF1ab/nsp6139V139LGtgTtg33AY.50.000062
ORF1ab/nsp6139V139AgTggCg33B.10.000027
ORF1ab/nsp6139V139VgtGgtA23B.1.2580.000133
ORF1ab/nsp6139V139VgtGgtT13B.1.2580.000067
ORF1ab/nsp6139V139LGtgTtg33B.1.5950.000783
ORF1ab/nsp6139V139AgTggCg33B.1.617.20.000011
ORF1ab/nsp6139V139MGtgAtg33B.1.6210.000266
ORF1ab/nsp6139V139VgtGgtT33B.1.6270.006061
ORF1ab/nsp6139V139VgtGgtA33P.10.000047
ORF1ab/nsp6139V139VgtGgtT33P.1.170.000485
ORF1ab/nsp6139V139del1gTgg-g22All0
ORF1ab/nsp6139V139VgtGgtA22AY.1000.000092
ORF1ab/nsp6139V139VgtGgtT22AY.1020.000053
ORF1ab/nsp6139V139AgTggCg22AY.1030.000012
ORF1ab/nsp6139V139LGtgTtg22AY.1030.000012
ORF1ab/nsp6139V139VgtGgtT12AY.340.000097
ORF1ab/nsp6139V139VgtGgtA12AY.340.000097
ORF1ab/nsp6139V139VgtGgtA12AY.390.000025
ORF1ab/nsp6139V139VgtGgtT12AY.390.000025
ORF1ab/nsp6139V139AgTggCg22AY.430.000009
ORF1ab/nsp6139V139AgTggCg22AY.470.000062
ORF1ab/nsp6139V139LGtgTtg22AY.470.000062
ORF1ab/nsp6139V139VgtGgtA22AY.9.10.000167
ORF1ab/nsp6139V139VgtGgtT22AY.980.000158
ORF1ab/nsp6139V139MGtgAtg22AY.980.000158
ORF1ab/nsp6139V139AgTggCg22AY.99.20.000184
ORF1ab/nsp6139V139LGtgCtg12B.10.000009
ORF1ab/nsp6139V139LGtgTtg12B.10.000009
ORF1ab/nsp6139V139LGtgTtg22B.1.258.140.001961
ORF1ab/nsp6139V139VgtGgtA22B.1.2790.001027
ORF1ab/nsp6139V139VgtGgtA22B.1.3510.000059
ORF1ab/nsp6139V139VgtGgtT22B.1.36.80.002
ORF1ab/nsp6139V139VgtGgtT22B.1.466.20.000782
ORF1ab/nsp6139V139VgtGgtA22B.1.5410.00885
ORF1ab/nsp6139V139GgTGgGT12B.1.5900.004545
ORF1ab/nsp6139V139GgTggGg12B.1.5900.004545
ORF1ab/nsp6139V139LGtgTtg22C.36.30.001134
ORF1ab/nsp6139V139VgtGgtA12D.20.000075
ORF1ab/nsp6139V139VgtGgtT12D.20.000075
ORF1ab/nsp6139V139delGTG---11A0.000387
ORF1ab/nsp6139V139VgtGgtA11A.2.50.000499
ORF1ab/nsp6139V139DgTGgAC11All0
ORF1ab/nsp6139V139SGTGTCA11All0
ORF1ab/nsp6139V139MGtgAtg11AY.10.000396
ORF1ab/nsp6139V139VgtGgtT11AY.1050.000643
ORF1ab/nsp6139V139VgtGgtT11AY.1070.000466
ORF1ab/nsp6139V139VgtGgtT11AY.120.000316
ORF1ab/nsp6139V139delGTG---11AY.1200.000037
ORF1ab/nsp6139V139VgtGgtT11AY.1210.000135
ORF1ab/nsp6139V139MGtgAtg11AY.200.000039
ORF1ab/nsp6139V139VgtGgtA11AY.200.000039
ORF1ab/nsp6139V139VgtGgtT11AY.230.00007
ORF1ab/nsp6139V139VgtGgtA11AY.240.000431
ORF1ab/nsp6139V139AgTggCg11AY.290.000016
ORF1ab/nsp6139V139VgtGgtA11AY.29.10.000221
ORF1ab/nsp6139V139LGtgTtg11AY.30.00001
ORF1ab/nsp6139V139MGtgAtg11AY.390.000025
ORF1ab/nsp6139V139EgTggAg11AY.40.000002
ORF1ab/nsp6139V139GgTggGg11AY.4.20.000022
ORF1ab/nsp6139V139LGtgTtg11AY.4.20.000022
ORF1ab/nsp6139V139VgtGgtA11AY.420.00004
ORF1ab/nsp6139V139GgTggGg11AY.430.000004
ORF1ab/nsp6139V139AgTggCg11AY.440.000006
ORF1ab/nsp6139V139delGTG---11AY.440.000006
ORF1ab/nsp6139V139LGtgTtg11AY.440.000006
ORF1ab/nsp6139V139VgtGgtA11AY.450.000122
ORF1ab/nsp6139V139LGtgTtg11AY.450.000122
ORF1ab/nsp6139V139GgTggGg11AY.46.50.000198
ORF1ab/nsp6139V139VgtGgtT11AY.470.000031
ORF1ab/nsp6139V139VgtGgtT11AY.50.000021
ORF1ab/nsp6139V139MGtgAtg11AY.50.000021
ORF1ab/nsp6139V139VgtGgtT11AY.520.000814
ORF1ab/nsp6139V139VgtGgtA11AY.610.000105
ORF1ab/nsp6139V139MGtgAtg11AY.7.20.000559
ORF1ab/nsp6139V139delGTG---11AY.750.000056
ORF1ab/nsp6139V139delGTG---11AY.780.001541
ORF1ab/nsp6139V139GgTggGg11AY.80.000606
ORF1ab/nsp6139V139EgTggAg11AY.90.000068
ORF1ab/nsp6139V139delGTG---11AY.9.20.000037
ORF1ab/nsp6139V139DgTGgAC11AY.9.20.000037
ORF1ab/nsp6139V139LGtgTtg11AY.950.000761
ORF1ab/nsp6139V139VgtGgtT11AY.99.20.000092
ORF1ab/nsp6139V139del1gTgg-g11B0.000128
ORF1ab/nsp6139V139delGTG---11B.1.10.000018
ORF1ab/nsp6139V139delGTG---11B.1.1.1390.022727
ORF1ab/nsp6139V139LGtgTtg11B.1.1.2140.000055
ORF1ab/nsp6139V139delGTG---11B.1.1.2840.000107
ORF1ab/nsp6139V139AgTggCg11B.1.1.2840.000107
ORF1ab/nsp6139V139VgtGgtA11B.1.1.2900.018182
ORF1ab/nsp6139V139GgTggGg11B.1.1.3120.001912
ORF1ab/nsp6139V139MGtgAtg11B.1.1.370.000193
ORF1ab/nsp6139V139LGtgTtg11B.1.1.370.000193
ORF1ab/nsp6139V139delGTG---11B.1.1.4090.002833
ORF1ab/nsp6139V139VgtGgtT11B.1.1.4090.002833
ORF1ab/nsp6139V139VgtGgtT11B.1.1.5190.00004
ORF1ab/nsp6139V139del1gTgg-g11B.1.1.70.000001
ORF1ab/nsp6139V139VgtGgtT11B.1.1080.005814
ORF1ab/nsp6139V139AgTggCg11B.1.1770.000013
ORF1ab/nsp6139V139VgtGgtA11B.1.177.120.000152
ORF1ab/nsp6139V139AgTggCg11B.1.177.430.001477
ORF1ab/nsp6139V139delGTG---11B.1.177.510.004566
ORF1ab/nsp6139V139MGtgAtg11B.1.177.70.000165
ORF1ab/nsp6139V139VgtGgtT11B.1.177.810.000189
ORF1ab/nsp6139V139EgTggAg11B.1.177.820.000477
ORF1ab/nsp6139V139LGtgTtg11B.1.20.000009
ORF1ab/nsp6139V139LGtgCtg11B.1.2060.000816
ORF1ab/nsp6139V139VgtGgtA11B.1.2210.000071
ORF1ab/nsp6139V139LGtgTtg11B.1.2400.000216
ORF1ab/nsp6139V139VgtGgtA11B.1.2400.000216
ORF1ab/nsp6139V139delGTG---11B.1.258.100.011364
ORF1ab/nsp6139V139VgtGgtA11B.1.3330.010526
ORF1ab/nsp6139V139LGtgTtg11B.1.3460.001311
ORF1ab/nsp6139V139MGtgAtg11B.1.3510.00003
ORF1ab/nsp6139V139LGtgTtg11B.1.360.000146
ORF1ab/nsp6139V139VgtGgtT11B.1.360.000146
ORF1ab/nsp6139V139AgTggCg11B.1.360.000146
ORF1ab/nsp6139V139VgtGgtT11B.1.36.170.000494
ORF1ab/nsp6139V139VgtGgtA11B.1.36.310.001751
ORF1ab/nsp6139V139VgtGgtA11B.1.4160.001269
ORF1ab/nsp6139V139VgtGgtA11B.1.4270.00005
ORF1ab/nsp6139V139AgTggCg11B.1.4290.000024
ORF1ab/nsp6139V139VgtGgtA11B.1.4460.02
ORF1ab/nsp6139V139LGtgTtg11B.1.4700.001404
ORF1ab/nsp6139V139VgtGgtT11B.1.5250.000113
ORF1ab/nsp6139V139LGtgTtg11B.1.5250.000113
ORF1ab/nsp6139V139AgTggCg11B.1.5260.000024
ORF1ab/nsp6139V139delGTG---11B.1.5770.000687
ORF1ab/nsp6139V139VgtGgtT11B.1.5900.004545
ORF1ab/nsp6139V139EgTggAg11B.1.5950.000261
ORF1ab/nsp6139V139VgtGgtA11B.1.5960.000087
ORF1ab/nsp6139V139LGtgTtg11B.1.617.10.000129
ORF1ab/nsp6139V139SGTGTCA11B.1.617.10.000129
ORF1ab/nsp6139V139delGTG---11B.1.617.10.000129
ORF1ab/nsp6139V139GgTggGg11B.1.617.20.000004
ORF1ab/nsp6139V139delGTG---11B.1.617.20.000004
ORF1ab/nsp6139V139VgtGgtA11B.1.6280.000352
ORF1ab/nsp6139V139delGTG---11B.1.6300.005236
ORF1ab/nsp6139V139VgtGgtT11B.1.6370.000073
ORF1ab/nsp6139V139delGTG---11C.370.000116
ORF1ab/nsp6139V139MGtgAtg11D.20.000075
ORF1ab/nsp6139V139LGtgTtg11D.20.000075
ORF1ab/nsp6139V139EgTggAg11D.20.000075
ORF1ab/nsp6139V139delGTG---11N.40.004255
ORF1ab/nsp6139V139MGtgAtg11P.10.000016
ORF1ab/nsp6139V139VgtGgtA11P.1.120.000484
ORF1ab/nsp6139V139delGTG---11Q.20.000613