CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 138

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6138R138RR3707RsynagAagG6966610.94971311384-11386
ORF1ab/nsp6138R138RR3707RsynAgaCga696350.050287411384-11386
ORF1ab/nsp6138R138delR3707deldelAGA---3939111384-11386
ORF1ab/nsp6138R138SR3707SnonsynagAagC14120.85714311384-11386
ORF1ab/nsp6138R138SR3707SnonsynagAagT1420.14285711384-11386
ORF1ab/nsp6138R138IR3707InonsynaGaaTa1010111384-11386
ORF1ab/nsp6138R138GR3707GnonsynAgaGga77111384-11386
ORF1ab/nsp6138R138KR3707KnonsynaGaaAa77111384-11386
ORF1ab/nsp6138R138XR3707XnonsynAgaTga650.83333311384-11386
ORF1ab/nsp6138R138del1R3707del1delAga-ga630.511384-11386
ORF1ab/nsp6138R138XR3707XnonsynAGaTAa610.16666711384-11386
ORF1ab/nsp6138R138del1R3707del1delAgA-gT610.16666711384-11386
ORF1ab/nsp6138R138del1R3707del1delagAag-610.16666711384-11386
ORF1ab/nsp6138R138del1R3707del1delaGaa-a610.16666711384-11386
ORF1ab/nsp6138R138TR3707TnonsynaGaaCa320.66666711384-11386
ORF1ab/nsp6138R138TR3707TnonsynaGAaCC310.33333311384-11386
ORF1ab/nsp6138R138del2R3707del2delaGAa--22111384-11386
ORF1ab/nsp6138R138VR3707VnonsynAGaGTa210.511384-11386
ORF1ab/nsp6138R138VR3707VnonsynAGAGTG210.511384-11386
ORF1ab/nsp6138R138LR3707LnonsynAGaTTa11111384-11386

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6138R138RagAagG661696All0.000126
ORF1ab/nsp6138R138RAgaCga35696All0.000007
ORF1ab/nsp6138R138RagAagG251251U.30.969112
ORF1ab/nsp6138R138RagAagG237240AY.40.000369
ORF1ab/nsp6138R138RAgaCga3240AY.40.000005
ORF1ab/nsp6138R138delAGA---3939All0.000007
ORF1ab/nsp6138R138RagAagG2529AY.250.00015
ORF1ab/nsp6138R138RAgaCga429AY.250.000024
ORF1ab/nsp6138R138RagAagG1927B.1.1.70.000017
ORF1ab/nsp6138R138RAgaCga827B.1.1.70.000007
ORF1ab/nsp6138R138RagAagG2020B.1.20.000176
ORF1ab/nsp6138R138RagAagG1717AY.1030.000106
ORF1ab/nsp6138R138SagAagC1214All0.000002
ORF1ab/nsp6138R138SagAagT214All0
ORF1ab/nsp6138R138delAGA---1212B.1.1.70.000011
ORF1ab/nsp6138R138RagAagG1111AY.46.20.006989
ORF1ab/nsp6138R138IaGaaTa1010All0.000002
ORF1ab/nsp6138R138GAgaGga77All0.000001
ORF1ab/nsp6138R138KaGaaAa77All0.000001
ORF1ab/nsp6138R138RagAagG57B.1.6370.000365
ORF1ab/nsp6138R138RAgaCga27B.1.6370.000146
ORF1ab/nsp6138R138XAgaTga56All0.000001
ORF1ab/nsp6138R138del1Aga-ga36All0.000001
ORF1ab/nsp6138R138del1agAag-16All0
ORF1ab/nsp6138R138XAGaTAa16All0
ORF1ab/nsp6138R138del1aGaa-a16All0
ORF1ab/nsp6138R138del1AgA-gT16All0
ORF1ab/nsp6138R138RagAagG56AY.430.000022
ORF1ab/nsp6138R138RAgaCga16AY.430.000004
ORF1ab/nsp6138R138IaGaaTa66B.10.000055
ORF1ab/nsp6138R138RAgaCga46B.1.10.000073
ORF1ab/nsp6138R138RagAagG26B.1.10.000036
ORF1ab/nsp6138R138RAgaCga66B.1.4740.011407
ORF1ab/nsp6138R138RagAagG66P.10.000095
ORF1ab/nsp6138R138RagAagG55AY.10.001979
ORF1ab/nsp6138R138RagAagG55AY.30.00005
ORF1ab/nsp6138R138RagAagG45B.1.617.20.000015
ORF1ab/nsp6138R138RAgaCga15B.1.617.20.000004
ORF1ab/nsp6138R138delAGA---44AY.250.000024
ORF1ab/nsp6138R138RagAagG44AY.260.000113
ORF1ab/nsp6138R138XAgaTga34B.10.000027
ORF1ab/nsp6138R138XAGaTAa14B.10.000009
ORF1ab/nsp6138R138RagAagG44B.1.36.210.008639
ORF1ab/nsp6138R138RagAagG44B.1.5260.000094
ORF1ab/nsp6138R138TaGaaCa23All0
ORF1ab/nsp6138R138TaGAaCC13All0
ORF1ab/nsp6138R138RagAagG33AY.39.10.000119
ORF1ab/nsp6138R138delAGA---33AY.40.000005
ORF1ab/nsp6138R138delAGA---33AY.430.000013
ORF1ab/nsp6138R138GAgaGga33B.10.000027
ORF1ab/nsp6138R138RagAagG33B.1.1770.00004
ORF1ab/nsp6138R138del2aGAa--22All0
ORF1ab/nsp6138R138VAGaGTa12All0
ORF1ab/nsp6138R138VAGAGTG12All0
ORF1ab/nsp6138R138RagAagG22AY.1020.000053
ORF1ab/nsp6138R138RagAagG12AY.390.000025
ORF1ab/nsp6138R138RAgaCga12AY.390.000025
ORF1ab/nsp6138R138RagAagG22AY.440.000012
ORF1ab/nsp6138R138del1aGaa-a12AY.440.000006
ORF1ab/nsp6138R138del1AgA-gT12AY.440.000006
ORF1ab/nsp6138R138SagAagT12B.10.000009
ORF1ab/nsp6138R138VAGaGTa12B.10.000009
ORF1ab/nsp6138R138SagAagC12B.10.000009
ORF1ab/nsp6138R138VAGAGTG12B.10.000009
ORF1ab/nsp6138R138RagAagG22B.1.4290.000047
ORF1ab/nsp6138R138SagAagC22B.1.617.20.000008
ORF1ab/nsp6138R138RAgaCga22B.1.6210.000177
ORF1ab/nsp6138R138delAGA---11A0.000387
ORF1ab/nsp6138R138LAGaTTa11All0
ORF1ab/nsp6138R138RagAagG11AY.1010.00049
ORF1ab/nsp6138R138SagAagC11AY.1070.000466
ORF1ab/nsp6138R138SagAagC11AY.1130.000142
ORF1ab/nsp6138R138RagAagG11AY.1130.000142
ORF1ab/nsp6138R138RAgaCga11AY.1180.000063
ORF1ab/nsp6138R138RagAagG11AY.1190.000035
ORF1ab/nsp6138R138RagAagG11AY.1200.000037
ORF1ab/nsp6138R138delAGA---11AY.1200.000037
ORF1ab/nsp6138R138KaGaaAa11AY.23.10.000417
ORF1ab/nsp6138R138GAgaGga11AY.250.000006
ORF1ab/nsp6138R138RagAagG11AY.290.000016
ORF1ab/nsp6138R138SagAagC11AY.30.00001
ORF1ab/nsp6138R138KaGaaAa11AY.30.00001
ORF1ab/nsp6138R138RagAagG11AY.3.10.000085
ORF1ab/nsp6138R138IaGaaTa11AY.390.000025
ORF1ab/nsp6138R138SagAagC11AY.430.000004
ORF1ab/nsp6138R138KaGaaAa11AY.430.000004
ORF1ab/nsp6138R138SagAagC11AY.440.000006
ORF1ab/nsp6138R138delAGA---11AY.440.000006
ORF1ab/nsp6138R138RagAagG11AY.450.000122
ORF1ab/nsp6138R138SagAagC11AY.46.60.000072
ORF1ab/nsp6138R138RagAagG11AY.480.000465
ORF1ab/nsp6138R138KaGaaAa11AY.50.000021
ORF1ab/nsp6138R138RagAagG11AY.60.000041
ORF1ab/nsp6138R138RagAagG11AY.650.000533
ORF1ab/nsp6138R138delAGA---11AY.750.000056
ORF1ab/nsp6138R138RagAagG11AY.750.000056
ORF1ab/nsp6138R138delAGA---11AY.780.001541
ORF1ab/nsp6138R138SagAagC11AY.840.000437
ORF1ab/nsp6138R138del1Aga-ga11AY.90.000068
ORF1ab/nsp6138R138SagAagC11AY.9.20.000037
ORF1ab/nsp6138R138TaGAaCC11AY.9.20.000037
ORF1ab/nsp6138R138delAGA---11AY.9.20.000037
ORF1ab/nsp6138R138SagAagC11AY.990.001049
ORF1ab/nsp6138R138TaGaaCa11B.10.000009
ORF1ab/nsp6138R138del1Aga-ga11B.10.000009
ORF1ab/nsp6138R138KaGaaAa11B.10.000009
ORF1ab/nsp6138R138LAGaTTa11B.10.000009
ORF1ab/nsp6138R138GAgaGga11B.1.10.000018
ORF1ab/nsp6138R138delAGA---11B.1.10.000018
ORF1ab/nsp6138R138XAgaTga11B.1.10.000018
ORF1ab/nsp6138R138delAGA---11B.1.1.1390.022727
ORF1ab/nsp6138R138RagAagG11B.1.1.250.000569
ORF1ab/nsp6138R138delAGA---11B.1.1.2840.000107
ORF1ab/nsp6138R138RagAagG11B.1.1.370.000193
ORF1ab/nsp6138R138RagAagG11B.1.1.3980.003226
ORF1ab/nsp6138R138del2aGAa--11B.1.1.4090.002833
ORF1ab/nsp6138R138del1agAag-11B.1.1.70.000001
ORF1ab/nsp6138R138IaGaaTa11B.1.1.70.000001
ORF1ab/nsp6138R138del2aGAa--11B.1.1.70.000001
ORF1ab/nsp6138R138KaGaaAa11B.1.1.70.000001
ORF1ab/nsp6138R138SagAagT11B.1.1.70.000001
ORF1ab/nsp6138R138TaGaaCa11B.1.1.70.000001
ORF1ab/nsp6138R138RagAagG11B.1.177.430.001477
ORF1ab/nsp6138R138delAGA---11B.1.177.510.004566
ORF1ab/nsp6138R138RagAagG11B.1.177.530.002392
ORF1ab/nsp6138R138RagAagG11B.1.177.750.001041
ORF1ab/nsp6138R138RagAagG11B.1.2210.000071
ORF1ab/nsp6138R138RAgaCga11B.1.2230.002778
ORF1ab/nsp6138R138delAGA---11B.1.258.100.011364
ORF1ab/nsp6138R138RagAagG11B.1.5250.000113
ORF1ab/nsp6138R138IaGaaTa11B.1.5490.007194
ORF1ab/nsp6138R138delAGA---11B.1.5770.000687
ORF1ab/nsp6138R138RagAagG11B.1.5770.000687
ORF1ab/nsp6138R138del1Aga-ga11B.1.5960.000087
ORF1ab/nsp6138R138RagAagG11B.1.5960.000087
ORF1ab/nsp6138R138delAGA---11B.1.617.10.000129
ORF1ab/nsp6138R138IaGaaTa11B.1.617.20.000004
ORF1ab/nsp6138R138KaGaaAa11B.1.617.20.000004
ORF1ab/nsp6138R138delAGA---11B.1.617.20.000004
ORF1ab/nsp6138R138delAGA---11B.1.6300.005236
ORF1ab/nsp6138R138GAgaGga11B.1.9.50.005682
ORF1ab/nsp6138R138RagAagG11D.20.000075
ORF1ab/nsp6138R138delAGA---11N.40.004255
ORF1ab/nsp6138R138GAgaGga11P.10.000016
ORF1ab/nsp6138R138RAgaCga11P.1.100.000269
ORF1ab/nsp6138R138RagAagG11P.1.120.000484
ORF1ab/nsp6138R138RagAagG11P.1.140.000048
ORF1ab/nsp6138R138delAGA---11Q.20.000613
ORF1ab/nsp6138R138XAgaTga11Q.30.000145