CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 129

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6129R129KR3698KnonsynaGaaAa526526111357-11359
ORF1ab/nsp6129R129RR3698RsynagAagG1311030.7862611357-11359
ORF1ab/nsp6129R129RR3698RsynAgaCga131280.2137411357-11359
ORF1ab/nsp6129R129IR3698InonsynaGaaTa2323111357-11359
ORF1ab/nsp6129R129delR3698deldelAGA---1616111357-11359
ORF1ab/nsp6129R129GR3698GnonsynAgaGga1616111357-11359
ORF1ab/nsp6129R129XR3698XnonsynAgaTga44111357-11359
ORF1ab/nsp6129R129TR3698TnonsynaGaaCa33111357-11359
ORF1ab/nsp6129R129del2R3698del2delAGa--a22111357-11359
ORF1ab/nsp6129R129SR3698SnonsynagAagT22111357-11359
ORF1ab/nsp6129R129AR3698AnonsynAGAGCT11111357-11359

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6129R129KaGaaAa526526All0.000101
ORF1ab/nsp6129R129KaGaaAa454454AY.810.904382
ORF1ab/nsp6129R129RagAagG103131All0.00002
ORF1ab/nsp6129R129RAgaCga28131All0.000005
ORF1ab/nsp6129R129KaGaaAa5252B.1.1.70.000047
ORF1ab/nsp6129R129RagAagG2424B.1.1.70.000021
ORF1ab/nsp6129R129IaGaaTa2323All0.000004
ORF1ab/nsp6129R129GAgaGga1616All0.000003
ORF1ab/nsp6129R129delAGA---1616All0.000003
ORF1ab/nsp6129R129RagAagG1515AY.1170.001268
ORF1ab/nsp6129R129RagAagG58B.1.617.20.000019
ORF1ab/nsp6129R129RAgaCga38B.1.617.20.000011
ORF1ab/nsp6129R129RagAagG77AY.1000.000322
ORF1ab/nsp6129R129RagAagG57AY.40.000008
ORF1ab/nsp6129R129RAgaCga27AY.40.000003
ORF1ab/nsp6129R129RagAagG56AY.250.00003
ORF1ab/nsp6129R129RAgaCga16AY.250.000006
ORF1ab/nsp6129R129RagAagG66B.1.1.1170.058252
ORF1ab/nsp6129R129RagAagG55AY.1020.000133
ORF1ab/nsp6129R129IaGaaTa55B.10.000046
ORF1ab/nsp6129R129RAgaCga35B.10.000027
ORF1ab/nsp6129R129RagAagG25B.10.000018
ORF1ab/nsp6129R129KaGaaAa55B.1.617.20.000019
ORF1ab/nsp6129R129XAgaTga44All0.000001
ORF1ab/nsp6129R129TaGaaCa33All0.000001
ORF1ab/nsp6129R129IaGaaTa33AY.430.000013
ORF1ab/nsp6129R129RagAagG23AY.430.000009
ORF1ab/nsp6129R129RAgaCga13AY.430.000004
ORF1ab/nsp6129R129RagAagG23AY.460.000208
ORF1ab/nsp6129R129RAgaCga13AY.460.000104
ORF1ab/nsp6129R129RAgaCga33AY.9.20.00011
ORF1ab/nsp6129R129RagAagG33B.1.1.2140.000166
ORF1ab/nsp6129R129delAGA---33B.1.1.70.000003
ORF1ab/nsp6129R129RagAagG33P.1.140.000143
ORF1ab/nsp6129R129SagAagT22All0
ORF1ab/nsp6129R129del2AGa--a22All0
ORF1ab/nsp6129R129RagAagG22AY.290.000032
ORF1ab/nsp6129R129RAgaCga12AY.470.000031
ORF1ab/nsp6129R129RagAagG12AY.470.000031
ORF1ab/nsp6129R129KaGaaAa22AY.50.000041
ORF1ab/nsp6129R129KaGaaAa22AY.750.000112
ORF1ab/nsp6129R129delAGA---22B.10.000018
ORF1ab/nsp6129R129GAgaGga22B.1.1770.000026
ORF1ab/nsp6129R129RAgaCga22B.1.20.000018
ORF1ab/nsp6129R129RagAagG22B.1.258.170.000208
ORF1ab/nsp6129R129GAgaGga22B.1.3510.000059
ORF1ab/nsp6129R129RAgaCga22B.1.4280.002041
ORF1ab/nsp6129R129IaGaaTa22B.1.5960.000174
ORF1ab/nsp6129R129GAgaGga22B.1.617.20.000008
ORF1ab/nsp6129R129IaGaaTa22D.20.00015
ORF1ab/nsp6129R129IaGaaTa11A0.000387
ORF1ab/nsp6129R129GAgaGga11A.2.50.000499
ORF1ab/nsp6129R129RagAagG11A.23.10.000704
ORF1ab/nsp6129R129AAGAGCT11All0
ORF1ab/nsp6129R129RagAagG11AY.10.000396
ORF1ab/nsp6129R129RagAagG11AY.1030.000006
ORF1ab/nsp6129R129IaGaaTa11AY.1030.000006
ORF1ab/nsp6129R129RAgaCga11AY.1040.001984
ORF1ab/nsp6129R129KaGaaAa11AY.1170.000085
ORF1ab/nsp6129R129delAGA---11AY.1200.000037
ORF1ab/nsp6129R129RAgaCga11AY.1210.000135
ORF1ab/nsp6129R129delAGA---11AY.250.000006
ORF1ab/nsp6129R129KaGaaAa11AY.290.000016
ORF1ab/nsp6129R129RagAagG11AY.30.00001
ORF1ab/nsp6129R129SagAagT11AY.39.10.00004
ORF1ab/nsp6129R129GAgaGga11AY.40.000002
ORF1ab/nsp6129R129XAgaTga11AY.40.000002
ORF1ab/nsp6129R129delAGA---11AY.40.000002
ORF1ab/nsp6129R129IaGaaTa11AY.40.000002
ORF1ab/nsp6129R129KaGaaAa11AY.40.000002
ORF1ab/nsp6129R129RAgaCga11AY.4.20.000022
ORF1ab/nsp6129R129RagAagG11AY.420.00004
ORF1ab/nsp6129R129KaGaaAa11AY.430.000004
ORF1ab/nsp6129R129KaGaaAa11AY.440.000006
ORF1ab/nsp6129R129RagAagG11AY.440.000006
ORF1ab/nsp6129R129delAGA---11AY.440.000006
ORF1ab/nsp6129R129RagAagG11AY.46.60.000072
ORF1ab/nsp6129R129IaGaaTa11AY.520.000814
ORF1ab/nsp6129R129RAgaCga11AY.60.000041
ORF1ab/nsp6129R129delAGA---11AY.600.000938
ORF1ab/nsp6129R129delAGA---11AY.780.001541
ORF1ab/nsp6129R129GAgaGga11AY.9.20.000037
ORF1ab/nsp6129R129TaGaaCa11AY.9.20.000037
ORF1ab/nsp6129R129IaGaaTa11B0.000128
ORF1ab/nsp6129R129KaGaaAa11B0.000128
ORF1ab/nsp6129R129GAgaGga11B.10.000009
ORF1ab/nsp6129R129XAgaTga11B.10.000009
ORF1ab/nsp6129R129RagAagG11B.1.10.000018
ORF1ab/nsp6129R129KaGaaAa11B.1.10.000018
ORF1ab/nsp6129R129GAgaGga11B.1.10.000018
ORF1ab/nsp6129R129IaGaaTa11B.1.1.1330.008475
ORF1ab/nsp6129R129AAGAGCT11B.1.1.1390.022727
ORF1ab/nsp6129R129KaGaaAa11B.1.1.280.000311
ORF1ab/nsp6129R129GAgaGga11B.1.1.280.000311
ORF1ab/nsp6129R129RAgaCga11B.1.1.3070.002532
ORF1ab/nsp6129R129RAgaCga11B.1.1.310.066667
ORF1ab/nsp6129R129KaGaaAa11B.1.1.3690.000446
ORF1ab/nsp6129R129RagAagG11B.1.1.4590.015385
ORF1ab/nsp6129R129SagAagT11B.1.1.70.000001
ORF1ab/nsp6129R129IaGaaTa11B.1.1.70.000001
ORF1ab/nsp6129R129GAgaGga11B.1.1.70.000001
ORF1ab/nsp6129R129TaGaaCa11B.1.1.70.000001
ORF1ab/nsp6129R129delAGA---11B.1.1600.000031
ORF1ab/nsp6129R129GAgaGga11B.1.160.220.006757
ORF1ab/nsp6129R129del2AGa--a11B.1.1770.000013
ORF1ab/nsp6129R129delAGA---11B.1.177.90.001332
ORF1ab/nsp6129R129IaGaaTa11B.1.230.006061
ORF1ab/nsp6129R129del2AGa--a11B.1.2430.00007
ORF1ab/nsp6129R129RAgaCga11B.1.2580.000067
ORF1ab/nsp6129R129delAGA---11B.1.258.100.011364
ORF1ab/nsp6129R129KaGaaAa11B.1.258.110.000396
ORF1ab/nsp6129R129XAgaTga11B.1.258.170.000104
ORF1ab/nsp6129R129IaGaaTa11B.1.3010.005917
ORF1ab/nsp6129R129RagAagG11B.1.3690.000285
ORF1ab/nsp6129R129GAgaGga11B.1.4290.000024
ORF1ab/nsp6129R129RagAagG11B.1.4290.000024
ORF1ab/nsp6129R129KaGaaAa11B.1.466.20.000391
ORF1ab/nsp6129R129RAgaCga11B.1.5230.002451
ORF1ab/nsp6129R129IaGaaTa11B.1.6230.000536
ORF1ab/nsp6129R129delAGA---11B.1.6300.005236
ORF1ab/nsp6129R129RagAagG11C.300.001727
ORF1ab/nsp6129R129RAgaCga11C.310.017857
ORF1ab/nsp6129R129GAgaGga11C.36.30.000567
ORF1ab/nsp6129R129XAgaTga11D.20.000075
ORF1ab/nsp6129R129TaGaaCa11D.20.000075
ORF1ab/nsp6129R129RagAagG11D.20.000075
ORF1ab/nsp6129R129delAGA---11N.40.004255
ORF1ab/nsp6129R129RagAagG11P.10.000016
ORF1ab/nsp6129R129IaGaaTa11P.1.140.000048