CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 122

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6122L122SL3691SnonsyntTatCa27462746111336-11338
ORF1ab/nsp6122L122LL3691LsynttAttG1881370.72872311336-11338
ORF1ab/nsp6122L122LL3691LsynTtaCta188510.27127711336-11338
ORF1ab/nsp6122L122IL3691InonsynTtaAta1212111336-11338
ORF1ab/nsp6122L122FL3691FnonsynttAttC12100.83333311336-11338
ORF1ab/nsp6122L122FL3691FnonsynttAttT1220.16666711336-11338
ORF1ab/nsp6122L122delL3691deldelTTA---88111336-11338
ORF1ab/nsp6122L122VL3691VnonsynTtaGta44111336-11338
ORF1ab/nsp6122L122XL3691XnonsyntTatAa11111336-11338
ORF1ab/nsp6122L122QL3691QnonsynTTaCAa11111336-11338

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6122L122StTatCa27462746All0.000525
ORF1ab/nsp6122L122StTatCa17441744C.36.30.989223
ORF1ab/nsp6122L122StTatCa523523C.360.476321
ORF1ab/nsp6122L122StTatCa328328C.36.3.10.891304
ORF1ab/nsp6122L122LttAttG137188All0.000026
ORF1ab/nsp6122L122LTtaCta51188All0.00001
ORF1ab/nsp6122L122StTatCa4141B.10.000376
ORF1ab/nsp6122L122LttAttG2638B.1.1.70.000023
ORF1ab/nsp6122L122LTtaCta1238B.1.1.70.000011
ORF1ab/nsp6122L122LttAttG2223AY.1030.000137
ORF1ab/nsp6122L122LTtaCta123AY.1030.000006
ORF1ab/nsp6122L122StTatCa1818B.1.10.000327
ORF1ab/nsp6122L122StTatCa1717B.1.177.350.011748
ORF1ab/nsp6122L122LttAttG1014AY.30.000099
ORF1ab/nsp6122L122LTtaCta414AY.30.00004
ORF1ab/nsp6122L122LttAttG1414AY.46.60.001011
ORF1ab/nsp6122L122LttAttG1414B.1.1950.070352
ORF1ab/nsp6122L122ITtaAta1212All0.000002
ORF1ab/nsp6122L122FttAttC1012All0.000002
ORF1ab/nsp6122L122FttAttT212All0
ORF1ab/nsp6122L122LttAttG1011AY.99.20.000922
ORF1ab/nsp6122L122LTtaCta111AY.99.20.000092
ORF1ab/nsp6122L122FttAttC99AY.40.000014
ORF1ab/nsp6122L122delTTA---88All0.000002
ORF1ab/nsp6122L122LTtaCta88AY.1000.000368
ORF1ab/nsp6122L122LttAttG88AY.440.000049
ORF1ab/nsp6122L122ITtaAta77B.1.1600.000218
ORF1ab/nsp6122L122StTatCa66AY.1020.000159
ORF1ab/nsp6122L122StTatCa66AY.40.000009
ORF1ab/nsp6122L122StTatCa66B.1.1.2940.007595
ORF1ab/nsp6122L122LTtaCta66P.10.000095
ORF1ab/nsp6122L122LTtaCta35B.1.20.000026
ORF1ab/nsp6122L122LttAttG25B.1.20.000018
ORF1ab/nsp6122L122StTatCa55B.1.230.030303
ORF1ab/nsp6122L122StTatCa55C.170.277778
ORF1ab/nsp6122L122StTatCa55C.350.00387
ORF1ab/nsp6122L122StTatCa55C.390.09434
ORF1ab/nsp6122L122VTtaGta44All0.000001
ORF1ab/nsp6122L122LttAttG44B.1.10.000073
ORF1ab/nsp6122L122StTatCa44B.1.1.10.001307
ORF1ab/nsp6122L122LttAttG23AY.40.000003
ORF1ab/nsp6122L122LTtaCta13AY.40.000002
ORF1ab/nsp6122L122LttAttG23AY.430.000009
ORF1ab/nsp6122L122LTtaCta13AY.430.000004
ORF1ab/nsp6122L122LTtaCta33B.10.000027
ORF1ab/nsp6122L122StTatCa33B.1.1.70.000003
ORF1ab/nsp6122L122StTatCa33B.1.1600.000094
ORF1ab/nsp6122L122StTatCa33B.1.1770.00004
ORF1ab/nsp6122L122StTatCa33B.1.2430.000209
ORF1ab/nsp6122L122LTtaCta23B.1.617.20.000008
ORF1ab/nsp6122L122LttAttG13B.1.617.20.000004
ORF1ab/nsp6122L122StTatCa33C.380.024194
ORF1ab/nsp6122L122LttAttG22AY.250.000012
ORF1ab/nsp6122L122LttAttG22AY.390.000049
ORF1ab/nsp6122L122VTtaGta22AY.50.000041
ORF1ab/nsp6122L122StTatCa22B.1.1.3720.001377
ORF1ab/nsp6122L122LTtaCta22B.1.1600.000062
ORF1ab/nsp6122L122StTatCa22B.1.3690.00057
ORF1ab/nsp6122L122LttAttG22B.1.5250.000226
ORF1ab/nsp6122L122StTatCa22B.1.810.042553
ORF1ab/nsp6122L122XtTatAa11All0
ORF1ab/nsp6122L122QTTaCAa11All0
ORF1ab/nsp6122L122LttAttG11AY.100.00053
ORF1ab/nsp6122L122FttAttT11AY.1000.000046
ORF1ab/nsp6122L122LttAttG11AY.1190.000035
ORF1ab/nsp6122L122LttAttG11AY.1200.000037
ORF1ab/nsp6122L122LttAttG11AY.210.001898
ORF1ab/nsp6122L122delTTA---11AY.250.000006
ORF1ab/nsp6122L122VTtaGta11AY.260.000028
ORF1ab/nsp6122L122LttAttG11AY.290.000016
ORF1ab/nsp6122L122LTtaCta11AY.29.10.000221
ORF1ab/nsp6122L122StTatCa11AY.30.00001
ORF1ab/nsp6122L122LTtaCta11AY.34.10.00051
ORF1ab/nsp6122L122LttAttG11AY.360.000148
ORF1ab/nsp6122L122delTTA---11AY.40.000002
ORF1ab/nsp6122L122StTatCa11AY.440.000006
ORF1ab/nsp6122L122QTTaCAa11AY.440.000006
ORF1ab/nsp6122L122LTtaCta11AY.450.000122
ORF1ab/nsp6122L122StTatCa11AY.460.000104
ORF1ab/nsp6122L122LttAttG11AY.540.000095
ORF1ab/nsp6122L122LttAttG11AY.750.000056
ORF1ab/nsp6122L122StTatCa11AY.75.10.00018
ORF1ab/nsp6122L122delTTA---11AY.780.001541
ORF1ab/nsp6122L122LttAttG11AY.90.000068
ORF1ab/nsp6122L122StTatCa11B0.000128
ORF1ab/nsp6122L122LttAttG11B0.000128
ORF1ab/nsp6122L122FttAttC11B.10.000009
ORF1ab/nsp6122L122delTTA---11B.10.000009
ORF1ab/nsp6122L122ITtaAta11B.10.000009
ORF1ab/nsp6122L122XtTatAa11B.1.1.1390.022727
ORF1ab/nsp6122L122LTtaCta11B.1.1.2050.003717
ORF1ab/nsp6122L122LTtaCta11B.1.1.2160.00089
ORF1ab/nsp6122L122StTatCa11B.1.1.270.00565
ORF1ab/nsp6122L122ITtaAta11B.1.1.280.000311
ORF1ab/nsp6122L122VTtaGta11B.1.1.70.000001
ORF1ab/nsp6122L122delTTA---11B.1.1.70.000001
ORF1ab/nsp6122L122FttAttT11B.1.1600.000031
ORF1ab/nsp6122L122ITtaAta11B.1.160.280.002924
ORF1ab/nsp6122L122LttAttG11B.1.177.720.00339
ORF1ab/nsp6122L122ITtaAta11B.1.177.830.001481
ORF1ab/nsp6122L122StTatCa11B.1.20.000009
ORF1ab/nsp6122L122LttAttG11B.1.258.170.000104
ORF1ab/nsp6122L122delTTA---11B.1.3290.000608
ORF1ab/nsp6122L122LttAttG11B.1.3510.00003
ORF1ab/nsp6122L122StTatCa11B.1.3750.00082
ORF1ab/nsp6122L122LttAttG11B.1.4270.00005
ORF1ab/nsp6122L122StTatCa11B.1.4290.000024
ORF1ab/nsp6122L122LTtaCta11B.1.5260.000024
ORF1ab/nsp6122L122StTatCa11B.1.5800.004065
ORF1ab/nsp6122L122LTtaCta11B.1.617.10.000129
ORF1ab/nsp6122L122StTatCa11B.1.617.20.000004
ORF1ab/nsp6122L122LttAttG11B.1.6210.000089
ORF1ab/nsp6122L122delTTA---11B.1.6300.005236
ORF1ab/nsp6122L122StTatCa11C.160.00106
ORF1ab/nsp6122L122LttAttG11C.37.10.002618
ORF1ab/nsp6122L122ITtaAta11D.20.000075
ORF1ab/nsp6122L122delTTA---11N.40.004255