CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 120 | V120V | V3689V | syn | gtA | gtG | 2409277 | 2405327 | 0.998361 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120V | V3689V | syn | gtA | gtT | 2409277 | 3946 | 0.00163784 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120V | V3689V | syn | gtA | gtC | 2409277 | 4 | 0.00000166025 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120L | V3689L | nonsyn | Gta | Tta | 771 | 406 | 0.526589 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120L | V3689L | nonsyn | GtA | TtG | 771 | 315 | 0.40856 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120L | V3689L | nonsyn | GtA | CtG | 771 | 48 | 0.0622568 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120L | V3689L | nonsyn | Gta | Cta | 771 | 2 | 0.00259403 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120I | V3689I | nonsyn | Gta | Ata | 278 | 278 | 1 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120M | V3689M | nonsyn | GtA | AtG | 211 | 211 | 1 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120A | V3689A | nonsyn | gTA | gCG | 141 | 137 | 0.971631 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120A | V3689A | nonsyn | gTa | gCa | 141 | 4 | 0.0283688 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120del1 | V3689del1 | del | gtA | gt- | 16 | 11 | 0.6875 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120del1 | V3689del1 | del | Gta | -ta | 16 | 5 | 0.3125 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120del | V3689del | del | GTA | --- | 7 | 7 | 1 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120G | V3689G | nonsyn | gTa | gGa | 7 | 6 | 0.857143 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120G | V3689G | nonsyn | gTA | gGG | 7 | 1 | 0.142857 | 11330-11332 |
ORF1ab/nsp6 | 120 | V120del2 | V3689del2 | del | gTA | g-- | 1 | 1 | 1 | 11330-11332 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2405327 | 2409277 | All | 0.460047 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 3946 | 2409277 | All | 0.000755 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtC | 4 | 2409277 | All | 0.000001 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 639354 | 641853 | AY.4 | 0.995105 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 2498 | 641853 | AY.4 | 0.003888 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtC | 1 | 641853 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 223882 | 224145 | B.1.617.2 | 0.843009 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 263 | 224145 | B.1.617.2 | 0.00099 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 211283 | 211471 | AY.43 | 0.936082 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 188 | 211471 | AY.43 | 0.000833 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 164580 | 164628 | AY.25 | 0.989919 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 48 | 164628 | AY.25 | 0.000289 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 161929 | 162040 | AY.44 | 0.985623 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 111 | 162040 | AY.44 | 0.000676 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 160048 | 160110 | AY.103 | 0.993747 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 61 | 160110 | AY.103 | 0.000379 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtC | 1 | 160110 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 100198 | 100222 | AY.3 | 0.996608 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 24 | 100222 | AY.3 | 0.000239 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 63219 | 63240 | AY.29 | 0.997192 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 21 | 63240 | AY.29 | 0.000331 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 48360 | 48382 | AY.5 | 0.998596 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 22 | 48382 | AY.5 | 0.000454 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 45955 | 45969 | AY.4.2 | 0.996703 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 14 | 45969 | AY.4.2 | 0.000304 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 39969 | 40000 | AY.39 | 0.987694 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 31 | 40000 | AY.39 | 0.000766 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 37591 | 37640 | AY.102 | 0.996686 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 49 | 37640 | AY.102 | 0.001299 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 28166 | 28170 | AY.119 | 0.994492 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 4 | 28170 | AY.119 | 0.000141 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 26842 | 26853 | AY.120 | 0.997955 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 11 | 26853 | AY.120 | 0.000409 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 25486 | 25518 | AY.20 | 0.990517 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 32 | 25518 | AY.20 | 0.001244 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 25123 | 25128 | AY.39.1 | 0.995207 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 5 | 25128 | AY.39.1 | 0.000198 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 24714 | 24744 | AY.42 | 0.994247 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 30 | 24744 | AY.42 | 0.001207 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 24254 | 24267 | AY.6 | 0.997532 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 13 | 24267 | AY.6 | 0.000535 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 21634 | 21643 | AY.100 | 0.995307 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 9 | 21643 | AY.100 | 0.000414 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 20500 | 20508 | AY.98.1 | 0.992832 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 8 | 20508 | AY.98.1 | 0.000387 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 15759 | 15768 | AY.118 | 0.987282 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 9 | 15768 | AY.118 | 0.000564 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 14770 | 14824 | AY.33 | 0.986311 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 54 | 14824 | AY.33 | 0.003606 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 13867 | 14054 | AY.23 | 0.967218 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 187 | 14054 | AY.23 | 0.013043 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 13751 | 13756 | AY.46.6 | 0.992924 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 5 | 13756 | AY.46.6 | 0.000361 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 12395 | 12402 | AY.98 | 0.979145 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 7 | 12402 | AY.98 | 0.000553 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 11696 | 11705 | AY.3.1 | 0.997186 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 9 | 11705 | AY.3.1 | 0.000767 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 11518 | 11524 | AY.117 | 0.973462 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 6 | 11524 | AY.117 | 0.000507 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 10797 | 10824 | AY.99.2 | 0.995024 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 27 | 10824 | AY.99.2 | 0.002488 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 10264 | 10267 | AY.34 | 0.995249 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 3 | 10267 | AY.34 | 0.000291 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 9435 | 9453 | AY.46 | 0.981994 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 18 | 9453 | AY.46 | 0.001873 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 9183 | 9212 | AY.4.5 | 0.987101 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 29 | 9212 | AY.4.5 | 0.003117 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 8850 | 8850 | AY.7.1 | 0.997408 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 7929 | 7935 | AY.45 | 0.964833 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 6 | 7935 | AY.45 | 0.00073 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 7305 | 7322 | AY.121 | 0.988498 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 17 | 7322 | AY.121 | 0.0023 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 6864 | 6876 | AY.113 | 0.97736 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 12 | 6876 | AY.113 | 0.001709 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 6670 | 6696 | AY.36 | 0.988588 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 26 | 6696 | AY.36 | 0.003854 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 6661 | 6671 | AY.4.2.1 | 0.992402 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 10 | 6671 | AY.4.2.1 | 0.00149 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 6024 | 6029 | AY.46.4 | 0.990952 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 5 | 6029 | AY.46.4 | 0.000823 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5455 | 5456 | AY.111 | 0.999084 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 5456 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5091 | 5092 | AY.7 | 0.997844 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 5092 | AY.7 | 0.000196 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5040 | 5040 | AY.46.5 | 1 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 4532 | 4533 | AY.29.1 | 0.999338 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 4533 | AY.29.1 | 0.000221 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 4273 | 4274 | AY.114 | 0.98752 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 4274 | AY.114 | 0.000231 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 4198 | 4200 | AY.110 | 0.473067 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 2 | 4200 | AY.110 | 0.000225 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3521 | 3522 | AY.5.4 | 0.974267 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 3522 | AY.5.4 | 0.000277 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3378 | 3378 | AY.41 | 0.992945 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3337 | 3338 | AY.116 | 0.956983 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 3338 | AY.116 | 0.000287 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3286 | 3289 | AY.92 | 0.943982 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 3 | 3289 | AY.92 | 0.000862 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3199 | 3199 | AY.116.1 | 0.996263 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3135 | 3136 | AY.12 | 0.990834 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 3136 | AY.12 | 0.000316 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3059 | 3059 | AY.120.1 | 0.982022 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2945 | 2945 | AY.93 | 0.804205 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2930 | 2932 | AY.106 | 0.981246 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 2 | 2932 | AY.106 | 0.00067 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2918 | 2919 | AY.5.3 | 0.98448 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 2919 | AY.5.3 | 0.000337 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2499 | 2500 | AY.1 | 0.98892 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 2500 | AY.1 | 0.000396 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2419 | 2419 | AY.4.4 | 0.989771 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2396 | 2396 | AY.23.1 | 1 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2302 | 2305 | AY.85 | 0.98334 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 3 | 2305 | AY.85 | 0.001282 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2261 | 2266 | AY.84 | 0.989064 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 5 | 2266 | AY.84 | 0.002187 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2245 | 2247 | AY.94 | 0.993803 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 2 | 2247 | AY.94 | 0.000885 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2137 | 2137 | AY.107 | 0.995806 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2024 | 2025 | AY.101 | 0.992643 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 2025 | AY.101 | 0.00049 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2006 | 2006 | AY.120.2.1 | 0.999502 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1952 | 1953 | AY.34.1 | 0.995411 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 1953 | AY.34.1 | 0.00051 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1829 | 1830 | AY.32 | 0.973908 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 1830 | AY.32 | 0.000532 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1776 | 1777 | AY.7.2 | 0.993289 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 1777 | AY.7.2 | 0.000559 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1740 | 1740 | AY.9.2 | 0.063909 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1496 | 1496 | AY.46.2 | 0.950445 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1464 | 1466 | AY.105 | 0.941479 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 2 | 1466 | AY.105 | 0.001286 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1447 | 1447 | AY.90 | 0.990418 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1380 | 1380 | AY.39.1.1 | 1 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1356 | 1356 | AY.4.1 | 1 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1340 | 1340 | AY.91 | 0.978817 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1329 | 1329 | AY.109 | 0.982988 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1284 | 1284 | AY.95 | 0.977169 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1184 | 1184 | AY.4.3 | 0.996633 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1180 | 1180 | AY.87 | 0.982515 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1139 | 1139 | AY.86 | 0.945228 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1069 | 1069 | AY.46.3 | 0.998133 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1063 | 1063 | AY.88 | 0.939876 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 950 | 952 | AY.46.1 | 0.975359 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 2 | 952 | AY.46.1 | 0.002053 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 943 | 943 | AY.99 | 0.989507 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 913 | 918 | AY.47 | 0.028399 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 5 | 918 | AY.47 | 0.000156 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 884 | 884 | AY.80 | 0.997743 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 846 | 846 | AY.75 | 0.047395 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 841 | 841 | AY.77 | 0.94814 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 835 | 835 | B.1 | 0.007648 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 818 | 820 | AY.79 | 0.990315 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 2 | 820 | AY.79 | 0.002421 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 406 | 771 | All | 0.000078 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 315 | 771 | All | 0.00006 |
ORF1ab/nsp6 | 120 | V120L | GtA | CtG | 48 | 771 | All | 0.000009 |
ORF1ab/nsp6 | 120 | V120L | Gta | Cta | 2 | 771 | All | 0 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 767 | 769 | AY.108 | 0.845645 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 2 | 769 | AY.108 | 0.002205 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 723 | 723 | AY.82 | 0.981004 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 719 | 719 | AY.120.2 | 0.924165 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 649 | 649 | AY.39.2 | 1 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 640 | 640 | AY.99.1 | 0.993789 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 612 | 618 | AY.78 | 0.942989 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 6 | 618 | AY.78 | 0.009245 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 616 | 616 | AY.73 | 0.409847 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 586 | 586 | AY.97 | 0.996599 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 575 | 577 | AY.83 | 0.991379 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 2 | 577 | AY.83 | 0.003448 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 528 | 528 | B | 0.067485 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 497 | 497 | AY.104 | 0.986111 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 493 | 493 | AY.68 | 0.134958 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 487 | 487 | AY.81 | 0.97012 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 473 | 473 | AY.21 | 0.897533 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 470 | 471 | AY.22 | 0.983264 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 471 | AY.22 | 0.002092 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 471 | 471 | AY.96 | 0.977178 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 444 | 445 | AY.55 | 0.407339 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 445 | AY.55 | 0.000917 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 402 | 402 | AY.5.2 | 0.990148 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 377 | 378 | AY.74 | 0.043599 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 378 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 300 | 301 | AY.54 | 0.028604 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 301 | AY.54 | 0.000095 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 299 | 299 | AY.59 | 0.158369 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 288 | 288 | AY.58 | 0.261343 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 284 | 284 | AY.19 | 0.323831 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 278 | 278 | All | 0.000053 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 265 | 265 | AY.5.1 | 0.996241 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 259 | 259 | B.1.396 | 0.182781 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 246 | 246 | AY.91.1 | 1 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 240 | 240 | AY.75.1 | 0.043274 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 222 | 222 | AY.53 | 0.06383 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 211 | 211 | All | 0.00004 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 197 | 207 | B.1.1.7 | 0.000176 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 9 | 207 | B.1.1.7 | 0.000008 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtC | 1 | 207 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 205 | 205 | AY.76 | 0.990338 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 204 | 204 | AY.89 | 1 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 202 | 202 | AY.52 | 0.164495 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 191 | 191 | AY.115 | 0.994792 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 189 | 189 | AY.26 | 0.005351 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 183 | 183 | AY.69 | 0.034161 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 174 | 174 | AY.67 | 0.08078 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 167 | 167 | AY.64 | 0.099405 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 151 | 151 | AY.56 | 0.242376 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 147 | 147 | AY.37 | 0.04646 |
ORF1ab/nsp6 | 120 | V120A | gTA | gCG | 137 | 141 | All | 0.000026 |
ORF1ab/nsp6 | 120 | V120A | gTa | gCa | 4 | 141 | All | 0.000001 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 140 | 140 | AY.10 | 0.074192 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 137 | 137 | AY.62 | 0.059695 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 135 | 135 | AY.16 | 0.051253 |
ORF1ab/nsp6 | 120 | V120A | gTA | gCG | 126 | 126 | AY.29 | 0.001987 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 123 | 123 | AY.63 | 0.047582 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 117 | 117 | B.1.1.7 | 0.000105 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 109 | 109 | AY.57 | 0.071522 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 96 | 96 | AY.40 | 0.092575 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 95 | 95 | AY.14 | 0.008361 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 92 | 92 | AY.4.2 | 0.001995 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 90 | 90 | AY.35 | 0.020974 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 88 | 88 | AY.13 | 0.014166 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 87 | 87 | AY.48 | 0.040465 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 86 | 87 | AY.70 | 0.017932 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 87 | AY.70 | 0.000209 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 64 | 64 | AY.65 | 0.034115 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 61 | 62 | AY.60 | 0.057223 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 62 | AY.60 | 0.000938 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 60 | 60 | AY.71 | 0.028504 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 59 | 59 | B.1.2 | 0.00052 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 58 | 58 | AY.92 | 0.016662 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 56 | 56 | AY.38 | 0.027958 |
ORF1ab/nsp6 | 120 | V120L | GtA | CtG | 45 | 56 | AY.44 | 0.000274 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 11 | 56 | AY.44 | 0.000067 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 54 | 54 | AY.11 | 0.072289 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 45 | 45 | AY.43 | 0.000199 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 40 | 40 | B.1.1 | 0.000726 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 39 | 39 | AY.4 | 0.000061 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 39 | 39 | AY.50 | 0.031175 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 38 | 38 | AY.4 | 0.000059 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 37 | 37 | AY.49 | 0.118211 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 30 | 31 | AY.70 | 0.006255 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 1 | 31 | AY.70 | 0.000209 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 31 | 31 | B.1.1 | 0.000562 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 30 | 30 | AY.17 | 0.245902 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 30 | 30 | AY.36 | 0.004446 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 30 | 30 | AY.61 | 0.003143 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 29 | 29 | B.1.177.52 | 0.050967 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 28 | 28 | AY.16.1 | 0.013158 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 27 | 28 | P.1 | 0.000425 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 28 | P.1 | 0.000016 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 23 | 24 | B.1 | 0.000211 |
ORF1ab/nsp6 | 120 | V120L | Gta | Cta | 1 | 24 | B.1 | 0.000009 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 23 | 23 | AY.43 | 0.000102 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 23 | 23 | AY.51 | 0.020909 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 21 | 21 | AY.28 | 0.039698 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 21 | 21 | AY.30 | 0.00831 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 18 | 21 | B.1.617.2 | 0.000068 |
ORF1ab/nsp6 | 120 | V120L | GtA | CtG | 3 | 21 | B.1.617.2 | 0.000011 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 18 | 18 | AY.9 | 0.001217 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 18 | 18 | B.1.2 | 0.000158 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 16 | 17 | AY.9.1 | 0.00134 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 17 | AY.9.1 | 0.000084 |
ORF1ab/nsp6 | 120 | V120del1 | gtA | gt- | 11 | 16 | All | 0.000002 |
ORF1ab/nsp6 | 120 | V120del1 | Gta | -ta | 5 | 16 | All | 0.000001 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 14 | 14 | AY.66 | 0.014973 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 14 | 14 | AY.8 | 0.008485 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 14 | 14 | B.1.1.526 | 0.049645 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 13 | 13 | AY.72 | 0.017687 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 13 | 13 | B.1.617.1 | 0.001677 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 12 | 12 | AY.114 | 0.002773 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 10 | 10 | AY.24 | 0.00431 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 10 | 10 | B.1.576 | 0.009066 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 10 | 10 | B.1.619 | 0.008711 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 9 | 9 | B.1.628 | 0.003171 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 8 | 8 | B.1.177.73 | 0.00453 |
ORF1ab/nsp6 | 120 | V120del | GTA | --- | 7 | 7 | All | 0.000001 |
ORF1ab/nsp6 | 120 | V120G | gTa | gGa | 6 | 7 | All | 0.000001 |
ORF1ab/nsp6 | 120 | V120G | gTA | gGG | 1 | 7 | All | 0 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 7 | 7 | AY.27 | 0.000453 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 7 | 7 | P.1.1 | 0.002224 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 7 | 7 | P.1.12 | 0.003388 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5 | 6 | A | 0.001935 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 6 | A | 0.000387 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 6 | 6 | B.1.1.432 | 0.007595 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 6 | 6 | B.1.623 | 0.003219 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 6 | 6 | B.40 | 0.002186 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 5 | 5 | B.1.1.349 | 0.051546 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5 | 5 | B.1.214 | 0.018315 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5 | 5 | B.1.335 | 0.051546 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5 | 5 | B.1.349 | 0.003574 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5 | 5 | B.1.375 | 0.004098 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 4 | 4 | B.1.1.523 | 0.00625 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3 | 4 | B.1.369 | 0.000856 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 4 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 4 | 4 | B.1.474 | 0.007605 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 4 | 4 | B.55 | 0.011799 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp6 | 120 | V120A | gTA | gCG | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp6 | 120 | V120del1 | Gta | -ta | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp6 | 120 | V120del1 | gtA | gt- | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3 | 3 | B.1.485 | 0.044776 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3 | 3 | B.1.600 | 0.017544 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3 | 3 | B.1.604 | 0.051724 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | 0.111111 | |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp6 | 120 | V120del1 | gtA | gt- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 2 | 2 | B.1.1.200 | 0.014925 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp6 | 120 | V120del1 | Gta | -ta | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | B.1.170 | 0.008621 |
ORF1ab/nsp6 | 120 | V120G | gTa | gGa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp6 | 120 | V120G | gTa | gGa | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp6 | 120 | V120del1 | gtA | gt- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 120 | V120A | gTA | gCG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | B.1.629 | 0.026667 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp6 | 120 | V120del2 | gTA | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 120 | V120A | gTA | gCG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp6 | 120 | V120A | gTA | gCG | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp6 | 120 | V120del1 | gtA | gt- | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 120 | V120del | GTA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 120 | V120A | gTA | gCG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp6 | 120 | V120A | gTA | gCG | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp6 | 120 | V120del1 | gtA | gt- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 120 | V120del | GTA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 120 | V120del1 | gtA | gt- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 120 | V120G | gTA | gGG | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp6 | 120 | V120del1 | gtA | gt- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 120 | V120A | gTA | gCG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp6 | 120 | V120A | gTA | gCG | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp6 | 120 | V120del | GTA | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 120 | V120L | GtA | TtG | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp6 | 120 | V120M | GtA | AtG | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp6 | 120 | V120del1 | gtA | gt- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp6 | 120 | V120del | GTA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.1.342 | 0.0625 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp6 | 120 | V120del | GTA | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 120 | V120G | gTa | gGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 120 | V120A | gTa | gCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp6 | 120 | V120G | gTa | gGa | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp6 | 120 | V120A | gTa | gCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 120 | V120del1 | Gta | -ta | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.208 | 0.04 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp6 | 120 | V120A | gTa | gCa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp6 | 120 | V120A | gTa | gCa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp6 | 120 | V120L | Gta | Cta | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.586 | 0.010989 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 120 | V120del1 | gtA | gt- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp6 | 120 | V120del2 | gTA | g-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp6 | 120 | V120del | GTA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 120 | V120del | GTA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp6 | 120 | V120V | gtA | gtG | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp6 | 120 | V120L | Gta | Tta | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp6 | 120 | V120I | Gta | Ata | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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