CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 118

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6118S118LS3687LnonsyntCatTa408140800.99975511324-11326
ORF1ab/nsp6118S118LS3687LnonsyntCAtTG408110.00024503811324-11326
ORF1ab/nsp6118S118SS3687SsyntcAtcG3612680.74238211324-11326
ORF1ab/nsp6118S118SS3687SsyntcAtcT361640.17728511324-11326
ORF1ab/nsp6118S118SS3687SsyntcAtcC361290.080332411324-11326
ORF1ab/nsp6118S118AS3687AnonsynTcaGca5454111324-11326
ORF1ab/nsp6118S118PS3687PnonsynTcaCca49480.97959211324-11326
ORF1ab/nsp6118S118PS3687PnonsynTcACcC4910.020408211324-11326
ORF1ab/nsp6118S118TS3687TnonsynTcaAca77111324-11326
ORF1ab/nsp6118S118delS3687deldelTCA---77111324-11326
ORF1ab/nsp6118S118XS3687XnonsyntCatAa650.83333311324-11326
ORF1ab/nsp6118S118XS3687XnonsyntCatGa610.16666711324-11326
ORF1ab/nsp6118S118FS3687FnonsyntCAtTT11111324-11326
ORF1ab/nsp6118S118del1S3687del1delTca-ca11111324-11326

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6118S118LtCatTa40804081All0.00078
ORF1ab/nsp6118S118LtCAtTG14081All0
ORF1ab/nsp6118S118LtCatTa17281728C.36.30.980147
ORF1ab/nsp6118S118LtCatTa592592B.1.617.20.002229
ORF1ab/nsp6118S118LtCatTa434434AY.430.001923
ORF1ab/nsp6118S118StcAtcG268361All0.000051
ORF1ab/nsp6118S118StcAtcT64361All0.000012
ORF1ab/nsp6118S118StcAtcC29361All0.000006
ORF1ab/nsp6118S118LtCatTa324324C.36.3.10.880435
ORF1ab/nsp6118S118LtCatTa159160B.1.2430.011064
ORF1ab/nsp6118S118LtCAtTG1160B.1.2430.00007
ORF1ab/nsp6118S118LtCatTa110110B.1.20.000969
ORF1ab/nsp6118S118StcAtcG8383A.270.137417
ORF1ab/nsp6118S118LtCatTa6868AY.40.000106
ORF1ab/nsp6118S118LtCatTa6868B.1.1770.000895
ORF1ab/nsp6118S118StcAtcG5367B.1.1.70.000047
ORF1ab/nsp6118S118StcAtcC1267B.1.1.70.000011
ORF1ab/nsp6118S118StcAtcT267B.1.1.70.000002
ORF1ab/nsp6118S118LtCatTa6565AY.440.000396
ORF1ab/nsp6118S118ATcaGca5454All0.00001
ORF1ab/nsp6118S118LtCatTa5050B.1.1.70.000045
ORF1ab/nsp6118S118PTcaCca4849All0.000009
ORF1ab/nsp6118S118PTcACcC149All0
ORF1ab/nsp6118S118LtCatTa4040AY.60.001645
ORF1ab/nsp6118S118LtCatTa3737B.10.000339
ORF1ab/nsp6118S118LtCatTa3535AY.580.03176
ORF1ab/nsp6118S118LtCatTa3535C.360.031876
ORF1ab/nsp6118S118LtCatTa3333AY.330.002204
ORF1ab/nsp6118S118PTcaCca3233B.1.1.70.000029
ORF1ab/nsp6118S118PTcACcC133B.1.1.70.000001
ORF1ab/nsp6118S118LtCatTa3131AY.9.10.002595
ORF1ab/nsp6118S118StcAtcT1527B.1.20.000132
ORF1ab/nsp6118S118StcAtcG1127B.1.20.000097
ORF1ab/nsp6118S118StcAtcC127B.1.20.000009
ORF1ab/nsp6118S118StcAtcG2222B.1.6370.001608
ORF1ab/nsp6118S118LtCatTa2020AY.880.017683
ORF1ab/nsp6118S118StcAtcT1216B.1.10.000218
ORF1ab/nsp6118S118StcAtcG416B.1.10.000073
ORF1ab/nsp6118S118LtCatTa1515AY.1030.000093
ORF1ab/nsp6118S118LtCatTa1414AY.390.000346
ORF1ab/nsp6118S118ATcaGca1414B.1.1.70.000013
ORF1ab/nsp6118S118LtCatTa1313AY.1190.000459
ORF1ab/nsp6118S118StcAtcG713AY.40.000011
ORF1ab/nsp6118S118StcAtcC613AY.40.000009
ORF1ab/nsp6118S118StcAtcG512AY.440.00003
ORF1ab/nsp6118S118StcAtcC412AY.440.000024
ORF1ab/nsp6118S118StcAtcT312AY.440.000018
ORF1ab/nsp6118S118LtCatTa1111AY.9.20.000404
ORF1ab/nsp6118S118LtCatTa1010AY.250.00006
ORF1ab/nsp6118S118ATcaGca1010AY.250.00006
ORF1ab/nsp6118S118StcAtcG810AY.290.000126
ORF1ab/nsp6118S118StcAtcT210AY.290.000032
ORF1ab/nsp6118S118StcAtcT1010B.1.1600.000312
ORF1ab/nsp6118S118LtCatTa88AY.290.000126
ORF1ab/nsp6118S118StcAtcG88AY.300.003166
ORF1ab/nsp6118S118LtCatTa88AY.470.000249
ORF1ab/nsp6118S118LtCatTa88B.1.10.000145
ORF1ab/nsp6118S118StcAtcG78P.10.00011
ORF1ab/nsp6118S118StcAtcC18P.10.000016
ORF1ab/nsp6118S118TTcaAca77All0.000001
ORF1ab/nsp6118S118delTCA---77All0.000001
ORF1ab/nsp6118S118LtCatTa77AY.420.000282
ORF1ab/nsp6118S118LtCatTa77B.1.1.2940.008861
ORF1ab/nsp6118S118XtCatAa56All0.000001
ORF1ab/nsp6118S118XtCatGa16All0
ORF1ab/nsp6118S118LtCatTa66AY.1020.000159
ORF1ab/nsp6118S118LtCatTa66AY.460.000624
ORF1ab/nsp6118S118LtCatTa66AY.650.003198
ORF1ab/nsp6118S118StcAtcG66B.1.4270.000303
ORF1ab/nsp6118S118ATcaGca66B.1.4290.000141
ORF1ab/nsp6118S118StcAtcT36B.1.617.20.000011
ORF1ab/nsp6118S118StcAtcG36B.1.617.20.000011
ORF1ab/nsp6118S118LtCatTa55AU.20.012107
ORF1ab/nsp6118S118LtCatTa55AY.30.00005
ORF1ab/nsp6118S118ATcaGca55AY.40.000008
ORF1ab/nsp6118S118StcAtcG35B.10.000027
ORF1ab/nsp6118S118StcAtcT25B.10.000018
ORF1ab/nsp6118S118LtCatTa55B.1.1.5190.000199
ORF1ab/nsp6118S118LtCatTa55B.1.230.030303
ORF1ab/nsp6118S118LtCatTa55B.1.4290.000118
ORF1ab/nsp6118S118LtCatTa55C.350.00387
ORF1ab/nsp6118S118StcAtcG44AY.1030.000025
ORF1ab/nsp6118S118StcAtcG34AY.430.000013
ORF1ab/nsp6118S118StcAtcC14AY.430.000004
ORF1ab/nsp6118S118LtCatTa44AY.450.000487
ORF1ab/nsp6118S118StcAtcG44AY.5.40.001107
ORF1ab/nsp6118S118LtCatTa44AY.5.40.001107
ORF1ab/nsp6118S118LtCatTa44AY.530.00115
ORF1ab/nsp6118S118StcAtcG44B.1.1.1350.018779
ORF1ab/nsp6118S118StcAtcG34B.1.1770.00004
ORF1ab/nsp6118S118StcAtcC14B.1.1770.000013
ORF1ab/nsp6118S118ATcaGca44B.1.20.000035
ORF1ab/nsp6118S118LtCatTa44B.1.2210.000284
ORF1ab/nsp6118S118LtCatTa44B.1.2980.008457
ORF1ab/nsp6118S118StcAtcT24B.1.3510.000059
ORF1ab/nsp6118S118StcAtcG24B.1.3510.000059
ORF1ab/nsp6118S118StcAtcG33A0.001161
ORF1ab/nsp6118S118LtCatTa33AY.120.000948
ORF1ab/nsp6118S118StcAtcT23AY.250.000012
ORF1ab/nsp6118S118StcAtcG13AY.250.000006
ORF1ab/nsp6118S118StcAtcG33AY.30.00003
ORF1ab/nsp6118S118LtCatTa33AY.890.014706
ORF1ab/nsp6118S118LtCatTa33B.1.1.10.00098
ORF1ab/nsp6118S118TTcaAca33B.1.1.330.001263
ORF1ab/nsp6118S118LtCatTa33B.1.1.5260.010638
ORF1ab/nsp6118S118ATcaGca33B.1.177.210.000229
ORF1ab/nsp6118S118LtCatTa33B.1.2400.000647
ORF1ab/nsp6118S118StcAtcT33B.1.6210.000266
ORF1ab/nsp6118S118StcAtcG33B.560.085714
ORF1ab/nsp6118S118LtCatTa33D.20.000225
ORF1ab/nsp6118S118LtCatTa22AY.1000.000092
ORF1ab/nsp6118S118StcAtcG22AY.1020.000053
ORF1ab/nsp6118S118LtCatTa22AY.1200.000074
ORF1ab/nsp6118S118StcAtcG22AY.1200.000074
ORF1ab/nsp6118S118LtCatTa22AY.260.000057
ORF1ab/nsp6118S118LtCatTa22AY.380.000999
ORF1ab/nsp6118S118LtCatTa22AY.50.000041
ORF1ab/nsp6118S118StcAtcC12AY.50.000021
ORF1ab/nsp6118S118StcAtcG12AY.50.000021
ORF1ab/nsp6118S118LtCatTa22AY.610.00021
ORF1ab/nsp6118S118LtCatTa22AY.640.00119
ORF1ab/nsp6118S118LtCatTa22AY.980.000158
ORF1ab/nsp6118S118LtCatTa22AY.98.10.000097
ORF1ab/nsp6118S118XtCatAa12B0.000128
ORF1ab/nsp6118S118XtCatGa12B0.000128
ORF1ab/nsp6118S118StcAtcG22B.1.1.1610.007067
ORF1ab/nsp6118S118PTcaCca22B.1.1770.000026
ORF1ab/nsp6118S118LtCatTa22B.1.2580.000133
ORF1ab/nsp6118S118LtCatTa22B.1.3110.000549
ORF1ab/nsp6118S118LtCatTa22B.1.4990.002101
ORF1ab/nsp6118S118PTcaCca22B.1.5260.000047
ORF1ab/nsp6118S118ATcaGca22B.1.617.20.000008
ORF1ab/nsp6118S118LtCatTa22B.1.810.042553
ORF1ab/nsp6118S118LtCatTa22P.10.000032
ORF1ab/nsp6118S118StcAtcG22Q.80.00033
ORF1ab/nsp6118S118LtCatTa110.055556
ORF1ab/nsp6118S118FtCAtTT110.055556
ORF1ab/nsp6118S118StcAtcT110.055556
ORF1ab/nsp6118S118del1Tca-ca11All0
ORF1ab/nsp6118S118FtCAtTT11All0
ORF1ab/nsp6118S118StcAtcG11AY.1000.000046
ORF1ab/nsp6118S118PTcaCca11AY.1030.000006
ORF1ab/nsp6118S118ATcaGca11AY.1030.000006
ORF1ab/nsp6118S118LtCatTa11AY.1050.000643
ORF1ab/nsp6118S118LtCatTa11AY.1130.000142
ORF1ab/nsp6118S118LtCatTa11AY.1170.000085
ORF1ab/nsp6118S118LtCatTa11AY.130.000161
ORF1ab/nsp6118S118LtCatTa11AY.190.00114
ORF1ab/nsp6118S118PTcaCca11AY.230.00007
ORF1ab/nsp6118S118delTCA---11AY.250.000006
ORF1ab/nsp6118S118StcAtcT11AY.29.10.000221
ORF1ab/nsp6118S118ATcaGca11AY.30.00001
ORF1ab/nsp6118S118LtCatTa11AY.300.000396
ORF1ab/nsp6118S118ATcaGca11AY.330.000067
ORF1ab/nsp6118S118LtCatTa11AY.34.10.00051
ORF1ab/nsp6118S118PTcaCca11AY.390.000025
ORF1ab/nsp6118S118PTcaCca11AY.40.000002
ORF1ab/nsp6118S118delTCA---11AY.40.000002
ORF1ab/nsp6118S118ATcaGca11AY.4.20.000022
ORF1ab/nsp6118S118StcAtcG11AY.4.20.000022
ORF1ab/nsp6118S118LtCatTa11AY.4.30.000842
ORF1ab/nsp6118S118ATcaGca11AY.430.000004
ORF1ab/nsp6118S118PTcaCca11AY.430.000004
ORF1ab/nsp6118S118ATcaGca11AY.440.000006
ORF1ab/nsp6118S118XtCatAa11AY.440.000006
ORF1ab/nsp6118S118LtCatTa11AY.46.60.000072
ORF1ab/nsp6118S118StcAtcT11AY.60.000041
ORF1ab/nsp6118S118XtCatAa11AY.710.000475
ORF1ab/nsp6118S118LtCatTa11AY.75.10.00018
ORF1ab/nsp6118S118delTCA---11AY.780.001541
ORF1ab/nsp6118S118LtCatTa11AY.840.000437
ORF1ab/nsp6118S118LtCatTa11AY.90.000068
ORF1ab/nsp6118S118StcAtcC11AY.98.10.000048
ORF1ab/nsp6118S118ATcaGca11AY.98.10.000048
ORF1ab/nsp6118S118XtCatAa11B.10.000009
ORF1ab/nsp6118S118del1Tca-ca11B.10.000009
ORF1ab/nsp6118S118delTCA---11B.10.000009
ORF1ab/nsp6118S118TTcaAca11B.1.10.000018
ORF1ab/nsp6118S118ATcaGca11B.1.10.000018
ORF1ab/nsp6118S118LtCatTa11B.1.1.1570.000913
ORF1ab/nsp6118S118StcAtcT11B.1.1.1640.005155
ORF1ab/nsp6118S118PTcaCca11B.1.1.2140.000055
ORF1ab/nsp6118S118TTcaAca11B.1.1.2220.000204
ORF1ab/nsp6118S118StcAtcT11B.1.1.3060.000438
ORF1ab/nsp6118S118LtCatTa11B.1.1.330.000421
ORF1ab/nsp6118S118StcAtcT11B.1.1.3680.003086
ORF1ab/nsp6118S118LtCatTa11B.1.1.3720.000689
ORF1ab/nsp6118S118StcAtcG11B.1.1.3760.005952
ORF1ab/nsp6118S118StcAtcG11B.1.1.4120.007634
ORF1ab/nsp6118S118StcAtcT11B.1.1.5190.00004
ORF1ab/nsp6118S118delTCA---11B.1.1.70.000001
ORF1ab/nsp6118S118LtCatTa11B.1.177.430.001477
ORF1ab/nsp6118S118LtCatTa11B.1.177.60.000977
ORF1ab/nsp6118S118LtCatTa11B.1.177.650.000665
ORF1ab/nsp6118S118StcAtcT11B.1.177.810.000189
ORF1ab/nsp6118S118PTcaCca11B.1.20.000009
ORF1ab/nsp6118S118LtCatTa11B.1.2180.005155
ORF1ab/nsp6118S118PTcaCca11B.1.2340.000132
ORF1ab/nsp6118S118StcAtcG11B.1.2410.000812
ORF1ab/nsp6118S118ATcaGca11B.1.3510.00003
ORF1ab/nsp6118S118StcAtcC11B.1.351.20.000303
ORF1ab/nsp6118S118StcAtcG11B.1.36.100.004785
ORF1ab/nsp6118S118LtCatTa11B.1.36.360.000602
ORF1ab/nsp6118S118LtCatTa11B.1.3750.00082
ORF1ab/nsp6118S118TTcaAca11B.1.4270.00005
ORF1ab/nsp6118S118LtCatTa11B.1.5170.000427
ORF1ab/nsp6118S118StcAtcG11B.1.5260.000024
ORF1ab/nsp6118S118LtCatTa11B.1.5760.000907
ORF1ab/nsp6118S118LtCatTa11B.1.5820.000491
ORF1ab/nsp6118S118TTcaAca11B.1.5960.000087
ORF1ab/nsp6118S118LtCatTa11B.1.6180.004032
ORF1ab/nsp6118S118LtCatTa11B.1.6210.000089
ORF1ab/nsp6118S118LtCatTa11B.1.621.10.000506
ORF1ab/nsp6118S118delTCA---11B.1.6300.005236
ORF1ab/nsp6118S118PTcaCca11B.1.6370.000073
ORF1ab/nsp6118S118LtCatTa11B.1.6370.000073
ORF1ab/nsp6118S118LtCatTa11B.1.80.001972
ORF1ab/nsp6118S118XtCatAa11B.6.60.000889
ORF1ab/nsp6118S118LtCatTa11C.160.00106
ORF1ab/nsp6118S118LtCatTa11C.300.001727
ORF1ab/nsp6118S118PTcaCca11C.370.000116
ORF1ab/nsp6118S118ATcaGca11C.370.000116
ORF1ab/nsp6118S118StcAtcG11C.60.037037
ORF1ab/nsp6118S118delTCA---11N.40.004255
ORF1ab/nsp6118S118PTcaCca11P.10.000016
ORF1ab/nsp6118S118LtCatTa11P.1.100.000269
ORF1ab/nsp6118S118StcAtcG11P.1.140.000048
ORF1ab/nsp6118S118PTcaCca11P.1.160.000374
ORF1ab/nsp6118S118LtCatTa11P.1.70.000319
ORF1ab/nsp6118S118LtCatTa11P.20.000187
ORF1ab/nsp6118S118LtCatTa11Q.80.000165