CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 118

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6118S118LS3687LnonsyntCatTa408140800.99975511324-11326
ORF1ab/nsp6118S118LS3687LnonsyntCAtTG408110.00024503811324-11326
ORF1ab/nsp6118S118SS3687SsyntcAtcG3612680.74238211324-11326
ORF1ab/nsp6118S118SS3687SsyntcAtcT361640.17728511324-11326
ORF1ab/nsp6118S118SS3687SsyntcAtcC361290.080332411324-11326
ORF1ab/nsp6118S118AS3687AnonsynTcaGca5454111324-11326
ORF1ab/nsp6118S118PS3687PnonsynTcaCca49480.97959211324-11326
ORF1ab/nsp6118S118PS3687PnonsynTcACcC4910.020408211324-11326
ORF1ab/nsp6118S118TS3687TnonsynTcaAca77111324-11326
ORF1ab/nsp6118S118delS3687deldelTCA---77111324-11326
ORF1ab/nsp6118S118XS3687XnonsyntCatAa650.83333311324-11326
ORF1ab/nsp6118S118XS3687XnonsyntCatGa610.16666711324-11326
ORF1ab/nsp6118S118FS3687FnonsyntCAtTT11111324-11326
ORF1ab/nsp6118S118del1S3687del1delTca-ca11111324-11326

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6118S118LtCatTa40804081All0.00078
ORF1ab/nsp6118S118LtCAtTG14081All0
ORF1ab/nsp6118S118LtCatTa17281728C.36.30.980147
ORF1ab/nsp6118S118LtCatTa592592B.1.617.20.002229
ORF1ab/nsp6118S118LtCatTa434434AY.430.001923
ORF1ab/nsp6118S118StcAtcG268361All0.000051
ORF1ab/nsp6118S118StcAtcT64361All0.000012
ORF1ab/nsp6118S118StcAtcC29361All0.000006
ORF1ab/nsp6118S118LtCatTa324324C.36.3.10.880435
ORF1ab/nsp6118S118LtCatTa159160B.1.2430.011064
ORF1ab/nsp6118S118LtCAtTG1160B.1.2430.00007
ORF1ab/nsp6118S118LtCatTa110110B.1.20.000969
ORF1ab/nsp6118S118StcAtcG8383A.270.137417
ORF1ab/nsp6118S118LtCatTa6868AY.40.000106
ORF1ab/nsp6118S118LtCatTa6868B.1.1770.000895
ORF1ab/nsp6118S118StcAtcG5367B.1.1.70.000047
ORF1ab/nsp6118S118StcAtcC1267B.1.1.70.000011
ORF1ab/nsp6118S118StcAtcT267B.1.1.70.000002
ORF1ab/nsp6118S118LtCatTa6565AY.440.000396
ORF1ab/nsp6118S118ATcaGca5454All0.00001
ORF1ab/nsp6118S118LtCatTa5050B.1.1.70.000045
ORF1ab/nsp6118S118PTcaCca4849All0.000009
ORF1ab/nsp6118S118PTcACcC149All0
ORF1ab/nsp6118S118LtCatTa4040AY.60.001645
ORF1ab/nsp6118S118LtCatTa3737B.10.000339
ORF1ab/nsp6118S118LtCatTa3535AY.580.03176
ORF1ab/nsp6118S118LtCatTa3535C.360.031876
ORF1ab/nsp6118S118LtCatTa3333AY.330.002204
ORF1ab/nsp6118S118PTcaCca3233B.1.1.70.000029
ORF1ab/nsp6118S118PTcACcC133B.1.1.70.000001
ORF1ab/nsp6118S118LtCatTa3131AY.9.10.002595
ORF1ab/nsp6118S118StcAtcT1527B.1.20.000132
ORF1ab/nsp6118S118StcAtcG1127B.1.20.000097
ORF1ab/nsp6118S118StcAtcC127B.1.20.000009
ORF1ab/nsp6118S118StcAtcG2222B.1.6370.001608
ORF1ab/nsp6118S118LtCatTa2020AY.880.017683
ORF1ab/nsp6118S118StcAtcT1216B.1.10.000218
ORF1ab/nsp6118S118StcAtcG416B.1.10.000073
ORF1ab/nsp6118S118LtCatTa1515AY.1030.000093
ORF1ab/nsp6118S118LtCatTa1414AY.390.000346
ORF1ab/nsp6118S118ATcaGca1414B.1.1.70.000013
ORF1ab/nsp6118S118LtCatTa1313AY.1190.000459
ORF1ab/nsp6118S118StcAtcG713AY.40.000011
ORF1ab/nsp6118S118StcAtcC613AY.40.000009
ORF1ab/nsp6118S118StcAtcG512AY.440.00003
ORF1ab/nsp6118S118StcAtcC412AY.440.000024
ORF1ab/nsp6118S118StcAtcT312AY.440.000018
ORF1ab/nsp6118S118LtCatTa1111AY.9.20.000404
ORF1ab/nsp6118S118LtCatTa1010AY.250.00006
ORF1ab/nsp6118S118ATcaGca1010AY.250.00006
ORF1ab/nsp6118S118StcAtcG810AY.290.000126
ORF1ab/nsp6118S118StcAtcT210AY.290.000032
ORF1ab/nsp6118S118StcAtcT1010B.1.1600.000312
ORF1ab/nsp6118S118LtCatTa88AY.290.000126
ORF1ab/nsp6118S118StcAtcG88AY.300.003166
ORF1ab/nsp6118S118LtCatTa88AY.470.000249
ORF1ab/nsp6118S118LtCatTa88B.1.10.000145
ORF1ab/nsp6118S118StcAtcG78P.10.00011
ORF1ab/nsp6118S118StcAtcC18P.10.000016
ORF1ab/nsp6118S118TTcaAca77All0.000001
ORF1ab/nsp6118S118delTCA---77All0.000001
ORF1ab/nsp6118S118LtCatTa77AY.420.000282
ORF1ab/nsp6118S118LtCatTa77B.1.1.2940.008861
ORF1ab/nsp6118S118XtCatAa56All0.000001
ORF1ab/nsp6118S118XtCatGa16All0
ORF1ab/nsp6118S118LtCatTa66AY.1020.000159
ORF1ab/nsp6118S118LtCatTa66AY.460.000624
ORF1ab/nsp6118S118LtCatTa66AY.650.003198
ORF1ab/nsp6118S118StcAtcG66B.1.4270.000303
ORF1ab/nsp6118S118ATcaGca66B.1.4290.000141
ORF1ab/nsp6118S118StcAtcT36B.1.617.20.000011
ORF1ab/nsp6118S118StcAtcG36B.1.617.20.000011
ORF1ab/nsp6118S118LtCatTa55AU.20.012107
ORF1ab/nsp6118S118LtCatTa55AY.30.00005
ORF1ab/nsp6118S118ATcaGca55AY.40.000008
ORF1ab/nsp6118S118StcAtcG35B.10.000027
ORF1ab/nsp6118S118StcAtcT25B.10.000018
ORF1ab/nsp6118S118LtCatTa55B.1.1.5190.000199
ORF1ab/nsp6118S118LtCatTa55B.1.230.030303
ORF1ab/nsp6118S118LtCatTa55B.1.4290.000118
ORF1ab/nsp6118S118LtCatTa55C.350.00387
ORF1ab/nsp6118S118StcAtcG44AY.1030.000025
ORF1ab/nsp6118S118StcAtcG34AY.430.000013
ORF1ab/nsp6118S118StcAtcC14AY.430.000004
ORF1ab/nsp6118S118LtCatTa44AY.450.000487
ORF1ab/nsp6118S118StcAtcG44AY.5.40.001107
ORF1ab/nsp6118S118LtCatTa44AY.5.40.001107
ORF1ab/nsp6118S118LtCatTa44AY.530.00115
ORF1ab/nsp6118S118StcAtcG44B.1.1.1350.018779
ORF1ab/nsp6118S118StcAtcG34B.1.1770.00004
ORF1ab/nsp6118S118StcAtcC14B.1.1770.000013
ORF1ab/nsp6118S118ATcaGca44B.1.20.000035
ORF1ab/nsp6118S118LtCatTa44B.1.2210.000284
ORF1ab/nsp6118S118LtCatTa44B.1.2980.008457
ORF1ab/nsp6118S118StcAtcT24B.1.3510.000059
ORF1ab/nsp6118S118StcAtcG24B.1.3510.000059
ORF1ab/nsp6118S118StcAtcG33A0.001161
ORF1ab/nsp6118S118LtCatTa33AY.120.000948
ORF1ab/nsp6118S118StcAtcT23AY.250.000012
ORF1ab/nsp6118S118StcAtcG13AY.250.000006
ORF1ab/nsp6118S118StcAtcG33AY.30.00003
ORF1ab/nsp6118S118LtCatTa33AY.890.014706
ORF1ab/nsp6118S118LtCatTa33B.1.1.10.00098
ORF1ab/nsp6118S118TTcaAca33B.1.1.330.001263
ORF1ab/nsp6118S118LtCatTa33B.1.1.5260.010638
ORF1ab/nsp6118S118ATcaGca33B.1.177.210.000229
ORF1ab/nsp6118S118LtCatTa33B.1.2400.000647
ORF1ab/nsp6118S118StcAtcT33B.1.6210.000266
ORF1ab/nsp6118S118StcAtcG33B.560.085714
ORF1ab/nsp6118S118LtCatTa33D.20.000225
ORF1ab/nsp6118S118LtCatTa22AY.1000.000092
ORF1ab/nsp6118S118StcAtcG22AY.1020.000053
ORF1ab/nsp6118S118LtCatTa22AY.1200.000074
ORF1ab/nsp6118S118StcAtcG22AY.1200.000074
ORF1ab/nsp6118S118LtCatTa22AY.260.000057
ORF1ab/nsp6118S118LtCatTa22AY.380.000999
ORF1ab/nsp6118S118LtCatTa22AY.50.000041
ORF1ab/nsp6118S118StcAtcC12AY.50.000021
ORF1ab/nsp6118S118StcAtcG12AY.50.000021
ORF1ab/nsp6118S118LtCatTa22AY.610.00021
ORF1ab/nsp6118S118LtCatTa22AY.640.00119
ORF1ab/nsp6118S118LtCatTa22AY.980.000158
ORF1ab/nsp6118S118LtCatTa22AY.98.10.000097
ORF1ab/nsp6118S118XtCatAa12B0.000128
ORF1ab/nsp6118S118XtCatGa12B0.000128
ORF1ab/nsp6118S118StcAtcG22B.1.1.1610.007067
ORF1ab/nsp6118S118PTcaCca22B.1.1770.000026
ORF1ab/nsp6118S118LtCatTa22B.1.2580.000133
ORF1ab/nsp6118S118LtCatTa22B.1.3110.000549
ORF1ab/nsp6118S118LtCatTa22B.1.4990.002101
ORF1ab/nsp6118S118PTcaCca22B.1.5260.000047
ORF1ab/nsp6118S118ATcaGca22B.1.617.20.000008
ORF1ab/nsp6118S118LtCatTa22B.1.810.042553
ORF1ab/nsp6118S118LtCatTa22P.10.000032
ORF1ab/nsp6118S118StcAtcG22Q.80.00033
ORF1ab/nsp6118S118LtCatTa110.055556
ORF1ab/nsp6118S118FtCAtTT110.055556
ORF1ab/nsp6118S118StcAtcT110.055556
ORF1ab/nsp6118S118del1Tca-ca11All0
ORF1ab/nsp6118S118FtCAtTT11All0
ORF1ab/nsp6118S118StcAtcG11AY.1000.000046
ORF1ab/nsp6118S118PTcaCca11AY.1030.000006
ORF1ab/nsp6118S118ATcaGca11AY.1030.000006
ORF1ab/nsp6118S118LtCatTa11AY.1050.000643
ORF1ab/nsp6118S118LtCatTa11AY.1130.000142
ORF1ab/nsp6118S118LtCatTa11AY.1170.000085
ORF1ab/nsp6118S118LtCatTa11AY.130.000161
ORF1ab/nsp6118S118LtCatTa11AY.190.00114
ORF1ab/nsp6118S118PTcaCca11AY.230.00007
ORF1ab/nsp6118S118delTCA---11AY.250.000006
ORF1ab/nsp6118S118StcAtcT11AY.29.10.000221
ORF1ab/nsp6118S118ATcaGca11AY.30.00001
ORF1ab/nsp6118S118LtCatTa11AY.300.000396
ORF1ab/nsp6118S118ATcaGca11AY.330.000067
ORF1ab/nsp6118S118LtCatTa11AY.34.10.00051
ORF1ab/nsp6118S118PTcaCca11AY.390.000025
ORF1ab/nsp6118S118PTcaCca11AY.40.000002
ORF1ab/nsp6118S118delTCA---11AY.40.000002
ORF1ab/nsp6118S118ATcaGca11AY.4.20.000022
ORF1ab/nsp6118S118StcAtcG11AY.4.20.000022
ORF1ab/nsp6118S118LtCatTa11AY.4.30.000842
ORF1ab/nsp6118S118ATcaGca11AY.430.000004
ORF1ab/nsp6118S118PTcaCca11AY.430.000004
ORF1ab/nsp6118S118ATcaGca11AY.440.000006
ORF1ab/nsp6118S118XtCatAa11AY.440.000006
ORF1ab/nsp6118S118LtCatTa11AY.46.60.000072
ORF1ab/nsp6118S118StcAtcT11AY.60.000041
ORF1ab/nsp6118S118XtCatAa11AY.710.000475
ORF1ab/nsp6118S118LtCatTa11AY.75.10.00018
ORF1ab/nsp6118S118delTCA---11AY.780.001541
ORF1ab/nsp6118S118LtCatTa11AY.840.000437
ORF1ab/nsp6118S118LtCatTa11AY.90.000068
ORF1ab/nsp6118S118StcAtcC11AY.98.10.000048
ORF1ab/nsp6118S118ATcaGca11AY.98.10.000048
ORF1ab/nsp6118S118XtCatAa11B.10.000009
ORF1ab/nsp6118S118del1Tca-ca11B.10.000009
ORF1ab/nsp6118S118delTCA---11B.10.000009
ORF1ab/nsp6118S118TTcaAca11B.1.10.000018
ORF1ab/nsp6118S118ATcaGca11B.1.10.000018
ORF1ab/nsp6118S118LtCatTa11B.1.1.1570.000913
ORF1ab/nsp6118S118StcAtcT11B.1.1.1640.005155
ORF1ab/nsp6118S118PTcaCca11B.1.1.2140.000055
ORF1ab/nsp6118S118TTcaAca11B.1.1.2220.000204
ORF1ab/nsp6118S118StcAtcT11B.1.1.3060.000438
ORF1ab/nsp6118S118LtCatTa11B.1.1.330.000421
ORF1ab/nsp6118S118StcAtcT11B.1.1.3680.003086
ORF1ab/nsp6118S118LtCatTa11B.1.1.3720.000689
ORF1ab/nsp6118S118StcAtcG11B.1.1.3760.005952
ORF1ab/nsp6118S118StcAtcG11B.1.1.4120.007634
ORF1ab/nsp6118S118StcAtcT11B.1.1.5190.00004
ORF1ab/nsp6118S118delTCA---11B.1.1.70.000001
ORF1ab/nsp6118S118LtCatTa11B.1.177.430.001477
ORF1ab/nsp6118S118LtCatTa11B.1.177.60.000977
ORF1ab/nsp6118S118LtCatTa11B.1.177.650.000665
ORF1ab/nsp6118S118StcAtcT11B.1.177.810.000189
ORF1ab/nsp6118S118PTcaCca11B.1.20.000009
ORF1ab/nsp6118S118LtCatTa11B.1.2180.005155
ORF1ab/nsp6118S118PTcaCca11B.1.2340.000132
ORF1ab/nsp6118S118StcAtcG11B.1.2410.000812
ORF1ab/nsp6118S118ATcaGca11B.1.3510.00003
ORF1ab/nsp6118S118StcAtcC11B.1.351.20.000303
ORF1ab/nsp6118S118StcAtcG11B.1.36.100.004785
ORF1ab/nsp6118S118LtCatTa11B.1.36.360.000602
ORF1ab/nsp6118S118LtCatTa11B.1.3750.00082
ORF1ab/nsp6118S118TTcaAca11B.1.4270.00005
ORF1ab/nsp6118S118LtCatTa11B.1.5170.000427
ORF1ab/nsp6118S118StcAtcG11B.1.5260.000024
ORF1ab/nsp6118S118LtCatTa11B.1.5760.000907
ORF1ab/nsp6118S118LtCatTa11B.1.5820.000491
ORF1ab/nsp6118S118TTcaAca11B.1.5960.000087
ORF1ab/nsp6118S118LtCatTa11B.1.6180.004032
ORF1ab/nsp6118S118LtCatTa11B.1.6210.000089
ORF1ab/nsp6118S118LtCatTa11B.1.621.10.000506
ORF1ab/nsp6118S118delTCA---11B.1.6300.005236
ORF1ab/nsp6118S118PTcaCca11B.1.6370.000073
ORF1ab/nsp6118S118LtCatTa11B.1.6370.000073
ORF1ab/nsp6118S118LtCatTa11B.1.80.001972
ORF1ab/nsp6118S118XtCatAa11B.6.60.000889
ORF1ab/nsp6118S118LtCatTa11C.160.00106
ORF1ab/nsp6118S118LtCatTa11C.300.001727
ORF1ab/nsp6118S118PTcaCca11C.370.000116
ORF1ab/nsp6118S118ATcaGca11C.370.000116
ORF1ab/nsp6118S118StcAtcG11C.60.037037
ORF1ab/nsp6118S118delTCA---11N.40.004255
ORF1ab/nsp6118S118PTcaCca11P.10.000016
ORF1ab/nsp6118S118LtCatTa11P.1.100.000269
ORF1ab/nsp6118S118StcAtcG11P.1.140.000048
ORF1ab/nsp6118S118PTcaCca11P.1.160.000374
ORF1ab/nsp6118S118LtCatTa11P.1.70.000319
ORF1ab/nsp6118S118LtCatTa11P.20.000187
ORF1ab/nsp6118S118LtCatTa11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.