CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 110

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp6110L110LL3679LsynCtaTta261524630.94187411300-11302
ORF1ab/nsp6110L110LL3679LsynctActG26151010.038623311300-11302
ORF1ab/nsp6110L110LL3679LsynctActT2615360.013766711300-11302
ORF1ab/nsp6110L110LL3679LsynctActC2615150.0057361411300-11302
ORF1ab/nsp6110L110IL3679InonsynCtaAta43410.95348811300-11302
ORF1ab/nsp6110L110IL3679InonsynCtAAtT4320.046511611300-11302
ORF1ab/nsp6110L110delL3679deldelCTA---3636111300-11302
ORF1ab/nsp6110L110YL3679YnonsynCTATAC2121111300-11302
ORF1ab/nsp6110L110PL3679PnonsyncTacCa2121111300-11302
ORF1ab/nsp6110L110QL3679QnonsyncTacAa1212111300-11302
ORF1ab/nsp6110L110del1L3679del1delctAct-12100.83333311300-11302
ORF1ab/nsp6110L110del1L3679del1delcTac-a1210.083333311300-11302
ORF1ab/nsp6110L110del1L3679del1delCta-ta1210.083333311300-11302
ORF1ab/nsp6110L110VL3679VnonsynCtaGta970.77777811300-11302
ORF1ab/nsp6110L110VL3679VnonsynCtAGtT920.22222211300-11302
ORF1ab/nsp6110L110RL3679RnonsyncTAcGT840.511300-11302
ORF1ab/nsp6110L110RL3679RnonsyncTacGa840.511300-11302
ORF1ab/nsp6110L110FL3679FnonsynCtATtT33111300-11302
ORF1ab/nsp6110L110XL3679XnonsynCTaTGa33111300-11302
ORF1ab/nsp6110L110CL3679CnonsynCTATGT33111300-11302
ORF1ab/nsp6110L110GL3679GnonsynCTAGGT210.511300-11302
ORF1ab/nsp6110L110GL3679GnonsynCTaGGa210.511300-11302
ORF1ab/nsp6110L110SL3679SnonsynCTAAGC210.511300-11302
ORF1ab/nsp6110L110SL3679SnonsynCTaTCa210.511300-11302
ORF1ab/nsp6110L110AL3679AnonsynCTAGCC11111300-11302
ORF1ab/nsp6110L110del2L3679del2delcTAc--11111300-11302
ORF1ab/nsp6110L110TL3679TnonsynCTaACa11111300-11302
ORF1ab/nsp6110L110NL3679NnonsynCTAAAT11111300-11302
ORF1ab/nsp6110L110KL3679KnonsynCTaAAa11111300-11302

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp6110L110LCtaTta24632615All0.000471
ORF1ab/nsp6110L110LctActG1012615All0.000019
ORF1ab/nsp6110L110LctActT362615All0.000007
ORF1ab/nsp6110L110LctActC152615All0.000003
ORF1ab/nsp6110L110LCtaTta16161679B.1.1.70.001447
ORF1ab/nsp6110L110LctActG621679B.1.1.70.000056
ORF1ab/nsp6110L110LctActT11679B.1.1.70.000001
ORF1ab/nsp6110L110LCtaTta130130B.1.10.002358
ORF1ab/nsp6110L110LCtaTta7175AY.440.000432
ORF1ab/nsp6110L110LctActT275AY.440.000012
ORF1ab/nsp6110L110LctActG275AY.440.000012
ORF1ab/nsp6110L110LCtaTta5757B.1.1.5190.002264
ORF1ab/nsp6110L110LCtaTta5254AY.430.00023
ORF1ab/nsp6110L110LctActT254AY.430.000009
ORF1ab/nsp6110L110LCtaTta5354B.1.20.000467
ORF1ab/nsp6110L110LctActG154B.1.20.000009
ORF1ab/nsp6110L110ICtaAta4143All0.000008
ORF1ab/nsp6110L110ICtAAtT243All0
ORF1ab/nsp6110L110LCtaTta4042AY.50.000826
ORF1ab/nsp6110L110LctActG242AY.50.000041
ORF1ab/nsp6110L110LCtaTta2540AY.40.000039
ORF1ab/nsp6110L110LctActG1540AY.40.000023
ORF1ab/nsp6110L110LCtaTta3639B.1.617.20.000136
ORF1ab/nsp6110L110LctActT239B.1.617.20.000008
ORF1ab/nsp6110L110LctActG139B.1.617.20.000004
ORF1ab/nsp6110L110delCTA---3636All0.000007
ORF1ab/nsp6110L110LCtaTta3636AY.1030.000224
ORF1ab/nsp6110L110LCtaTta3030P.1.170.004853
ORF1ab/nsp6110L110LctActC1428B.10.000128
ORF1ab/nsp6110L110LCtaTta1228B.10.00011
ORF1ab/nsp6110L110LctActG128B.10.000009
ORF1ab/nsp6110L110LctActT128B.10.000009
ORF1ab/nsp6110L110LCtaTta2323AY.30.000229
ORF1ab/nsp6110L110YCTATAC2121All0.000004
ORF1ab/nsp6110L110PcTacCa2121All0.000004
ORF1ab/nsp6110L110LCtaTta1921P.10.000299
ORF1ab/nsp6110L110LctActT221P.10.000032
ORF1ab/nsp6110L110LCtaTta1818B.1.1.280.005602
ORF1ab/nsp6110L110YCTATAC1818B.1.351.10.692308
ORF1ab/nsp6110L110LCtaTta1415AY.1200.000521
ORF1ab/nsp6110L110LctActG115AY.1200.000037
ORF1ab/nsp6110L110delCTA---1515B.1.351.30.013146
ORF1ab/nsp6110L110LCtaTta1314AY.1210.001759
ORF1ab/nsp6110L110LctActT114AY.1210.000135
ORF1ab/nsp6110L110LCtaTta1213AY.250.000072
ORF1ab/nsp6110L110LctActT113AY.250.000006
ORF1ab/nsp6110L110LCtaTta1313B.1.1600.000405
ORF1ab/nsp6110L110LCtaTta1313B.1.617.10.001677
ORF1ab/nsp6110L110QcTacAa1212All0.000002
ORF1ab/nsp6110L110del1ctAct-1012All0.000002
ORF1ab/nsp6110L110del1Cta-ta112All0
ORF1ab/nsp6110L110del1cTac-a112All0
ORF1ab/nsp6110L110LctActT1212AY.910.008766
ORF1ab/nsp6110L110LCtaTta1112B.1.1770.000145
ORF1ab/nsp6110L110LctActG112B.1.1770.000013
ORF1ab/nsp6110L110LCtaTta1112B.1.3510.000327
ORF1ab/nsp6110L110LctActC112B.1.3510.00003
ORF1ab/nsp6110L110ICtaAta1111B.1.20.000097
ORF1ab/nsp6110L110LCtaTta1111B.1.5260.000259
ORF1ab/nsp6110L110VCtaGta79All0.000001
ORF1ab/nsp6110L110VCtAGtT29All0
ORF1ab/nsp6110L110LctActT89B.1.1.3170.003294
ORF1ab/nsp6110L110LCtaTta19B.1.1.3170.000412
ORF1ab/nsp6110L110LCtaTta99B.1.177.570.002529
ORF1ab/nsp6110L110LCtaTta99B.1.5960.000784
ORF1ab/nsp6110L110RcTacGa48All0.000001
ORF1ab/nsp6110L110RcTAcGT48All0.000001
ORF1ab/nsp6110L110LCtaTta88B.1.1.2140.000444
ORF1ab/nsp6110L110LCtaTta47AY.390.000099
ORF1ab/nsp6110L110LctActG37AY.390.000074
ORF1ab/nsp6110L110ICtaAta77AY.440.000043
ORF1ab/nsp6110L110PcTacCa66B.1.1.70.000005
ORF1ab/nsp6110L110delCTA---66B.1.1.70.000005
ORF1ab/nsp6110L110VCtaGta56B.1.1.70.000004
ORF1ab/nsp6110L110VCtAGtT16B.1.1.70.000001
ORF1ab/nsp6110L110LCtaTta66Q.10.000758
ORF1ab/nsp6110L110LCtaTta55AY.300.001979
ORF1ab/nsp6110L110ICtaAta45B.1.1.70.000004
ORF1ab/nsp6110L110ICtAAtT15B.1.1.70.000001
ORF1ab/nsp6110L110LCtaTta34B.1.438.10.000322
ORF1ab/nsp6110L110LctActG14B.1.438.10.000107
ORF1ab/nsp6110L110RcTacGa24P.10.000032
ORF1ab/nsp6110L110RcTAcGT24P.10.000032
ORF1ab/nsp6110L110LCtaTta33A0.001161
ORF1ab/nsp6110L110CCTATGT33All0.000001
ORF1ab/nsp6110L110XCTaTGa33All0.000001
ORF1ab/nsp6110L110FCtATtT33All0.000001
ORF1ab/nsp6110L110ICtaAta33AY.200.000117
ORF1ab/nsp6110L110QcTacAa33AY.430.000013
ORF1ab/nsp6110L110ICtaAta33AY.430.000013
ORF1ab/nsp6110L110LctActG33AY.590.001589
ORF1ab/nsp6110L110LCtaTta33B.1.1.3760.017857
ORF1ab/nsp6110L110del1ctAct-23B.1.1.70.000002
ORF1ab/nsp6110L110del1Cta-ta13B.1.1.70.000001
ORF1ab/nsp6110L110ICtaAta33B.1.1770.00004
ORF1ab/nsp6110L110delCTA---33B.1.3510.000089
ORF1ab/nsp6110L110delCTA---33B.1.5250.000339
ORF1ab/nsp6110L110ICtaAta33B.1.617.20.000011
ORF1ab/nsp6110L110LCtaTta33B.1.6210.000266
ORF1ab/nsp6110L110LCtaTta33B.1.6370.000219
ORF1ab/nsp6110L110LCtaTta23P.1.140.000096
ORF1ab/nsp6110L110LctActT13P.1.140.000048
ORF1ab/nsp6110L110RcTAcGT120.055556
ORF1ab/nsp6110L110VCtaGta120.055556
ORF1ab/nsp6110L110VCtAGtT120.055556
ORF1ab/nsp6110L110GCTAGGT120.055556
ORF1ab/nsp6110L110RcTacGa120.055556
ORF1ab/nsp6110L110GCTaGGa120.055556
ORF1ab/nsp6110L110SCTAAGC12All0
ORF1ab/nsp6110L110SCTaTCa12All0
ORF1ab/nsp6110L110GCTAGGT12All0
ORF1ab/nsp6110L110GCTaGGa12All0
ORF1ab/nsp6110L110LCtaTta12AY.1020.000027
ORF1ab/nsp6110L110LctActT12AY.1020.000027
ORF1ab/nsp6110L110delCTA---22AY.250.000012
ORF1ab/nsp6110L110LCtaTta22AY.260.000057
ORF1ab/nsp6110L110LCtaTta22AY.290.000032
ORF1ab/nsp6110L110LCtaTta22AY.39.10.000079
ORF1ab/nsp6110L110LCtaTta22AY.470.000062
ORF1ab/nsp6110L110LCtaTta22AY.680.000547
ORF1ab/nsp6110L110LCtaTta22AY.700.000417
ORF1ab/nsp6110L110LCtaTta12AY.98.10.000048
ORF1ab/nsp6110L110LctActG12AY.98.10.000048
ORF1ab/nsp6110L110LctActG12B0.000128
ORF1ab/nsp6110L110LCtaTta12B0.000128
ORF1ab/nsp6110L110PcTacCa22B.10.000018
ORF1ab/nsp6110L110ICtaAta12B.10.000009
ORF1ab/nsp6110L110ICtAAtT12B.10.000009
ORF1ab/nsp6110L110ICtaAta22B.1.1.1590.009346
ORF1ab/nsp6110L110LCtaTta22B.1.1.1610.007067
ORF1ab/nsp6110L110LctActG22B.1.1.1890.003026
ORF1ab/nsp6110L110LCtaTta22B.1.1.2840.000215
ORF1ab/nsp6110L110LctActG12B.1.1.4340.000349
ORF1ab/nsp6110L110LCtaTta12B.1.1.4340.000349
ORF1ab/nsp6110L110LCtaTta22B.1.177.830.002963
ORF1ab/nsp6110L110QcTacAa22B.1.20.000018
ORF1ab/nsp6110L110LCtaTta22B.1.2330.028169
ORF1ab/nsp6110L110LCtaTta22B.1.2580.000133
ORF1ab/nsp6110L110YCTATAC22B.1.3510.000059
ORF1ab/nsp6110L110LCtaTta22B.1.360.000292
ORF1ab/nsp6110L110LCtaTta22B.1.4270.000101
ORF1ab/nsp6110L110LCtaTta22B.1.4290.000047
ORF1ab/nsp6110L110PcTacCa22B.1.617.20.000008
ORF1ab/nsp6110L110PcTacCa22B.1.6210.000177
ORF1ab/nsp6110L110LCtaTta22C.370.000232
ORF1ab/nsp6110L110XCTaTGa22P.10.000032
ORF1ab/nsp6110L110CCTATGT22P.10.000032
ORF1ab/nsp6110L110FCtATtT22P.10.000032
ORF1ab/nsp6110L110LCtaTta22P.1.100.000539
ORF1ab/nsp6110L110RcTacGa12P.1.140.000048
ORF1ab/nsp6110L110RcTAcGT12P.1.140.000048
ORF1ab/nsp6110L110LCtaTta22Q.40.00091
ORF1ab/nsp6110L110LctActT110.055556
ORF1ab/nsp6110L110LCtaTta11A.20.000662
ORF1ab/nsp6110L110LCtaTta11AH.30.003802
ORF1ab/nsp6110L110del2cTAc--11All0
ORF1ab/nsp6110L110TCTaACa11All0
ORF1ab/nsp6110L110NCTAAAT11All0
ORF1ab/nsp6110L110KCTaAAa11All0
ORF1ab/nsp6110L110ACTAGCC11All0
ORF1ab/nsp6110L110LCtaTta11AY.1000.000046
ORF1ab/nsp6110L110PcTacCa11AY.1000.000046
ORF1ab/nsp6110L110LCtaTta11AY.1080.001103
ORF1ab/nsp6110L110LCtaTta11AY.1170.000085
ORF1ab/nsp6110L110del1ctAct-11AY.1190.000035
ORF1ab/nsp6110L110LctActG11AY.1190.000035
ORF1ab/nsp6110L110LCtaTta11AY.120.000316
ORF1ab/nsp6110L110LCtaTta11AY.16.10.00047
ORF1ab/nsp6110L110LCtaTta11AY.200.000039
ORF1ab/nsp6110L110ICtaAta11AY.290.000016
ORF1ab/nsp6110L110PcTacCa11AY.290.000016
ORF1ab/nsp6110L110LCtaTta11AY.3.10.000085
ORF1ab/nsp6110L110ICtaAta11AY.300.000396
ORF1ab/nsp6110L110QcTacAa11AY.390.000025
ORF1ab/nsp6110L110QcTacAa11AY.40.000002
ORF1ab/nsp6110L110delCTA---11AY.40.000002
ORF1ab/nsp6110L110LCtaTta11AY.4.20.000022
ORF1ab/nsp6110L110LCtaTta11AY.4.40.000409
ORF1ab/nsp6110L110LCtaTta11AY.420.00004
ORF1ab/nsp6110L110del1ctAct-11AY.440.000006
ORF1ab/nsp6110L110PcTacCa11AY.440.000006
ORF1ab/nsp6110L110PcTacCa11AY.460.000104
ORF1ab/nsp6110L110PcTacCa11AY.50.000021
ORF1ab/nsp6110L110LCtaTta11AY.530.000288
ORF1ab/nsp6110L110LCtaTta11AY.60.000041
ORF1ab/nsp6110L110LCtaTta11AY.620.000436
ORF1ab/nsp6110L110del1ctAct-11AY.670.000464
ORF1ab/nsp6110L110LCtaTta11AY.7.10.000113
ORF1ab/nsp6110L110LCtaTta11AY.710.000475
ORF1ab/nsp6110L110LCtaTta11AY.750.000056
ORF1ab/nsp6110L110LCtaTta11AY.780.001541
ORF1ab/nsp6110L110delCTA---11AY.780.001541
ORF1ab/nsp6110L110LCtaTta11AY.840.000437
ORF1ab/nsp6110L110SCTaTCa11AY.960.002075
ORF1ab/nsp6110L110PcTacCa11B0.000128
ORF1ab/nsp6110L110ACTAGCC11B.10.000009
ORF1ab/nsp6110L110delCTA---11B.10.000009
ORF1ab/nsp6110L110delCTA---11B.1.10.000018
ORF1ab/nsp6110L110ICtaAta11B.1.10.000018
ORF1ab/nsp6110L110del1ctAct-11B.1.10.000018
ORF1ab/nsp6110L110LCtaTta11B.1.1.2770.000759
ORF1ab/nsp6110L110LCtaTta11B.1.1.3010.001179
ORF1ab/nsp6110L110QcTacAa11B.1.1.3060.000438
ORF1ab/nsp6110L110delCTA---11B.1.1.3180.000302
ORF1ab/nsp6110L110LCtaTta11B.1.1.3180.000302
ORF1ab/nsp6110L110LCtaTta11B.1.1.3360.016667
ORF1ab/nsp6110L110LCtaTta11B.1.1.3480.000796
ORF1ab/nsp6110L110LCtaTta11B.1.1.3690.000446
ORF1ab/nsp6110L110LctActT11B.1.1.3710.010417
ORF1ab/nsp6110L110LCtaTta11B.1.1.3720.000689
ORF1ab/nsp6110L110LCtaTta11B.1.1.4130.006897
ORF1ab/nsp6110L110LCtaTta11B.1.1.4320.001266
ORF1ab/nsp6110L110LCtaTta11B.1.1.5180.006329
ORF1ab/nsp6110L110KCTaAAa11B.1.1.70.000001
ORF1ab/nsp6110L110TCTaACa11B.1.1.70.000001
ORF1ab/nsp6110L110NCTAAAT11B.1.1.70.000001
ORF1ab/nsp6110L110SCTAAGC11B.1.1.70.000001
ORF1ab/nsp6110L110del2cTAc--11B.1.1.70.000001
ORF1ab/nsp6110L110PcTacCa11B.1.1.700.000341
ORF1ab/nsp6110L110QcTacAa11B.1.1.830.00271
ORF1ab/nsp6110L110LCtaTta11B.1.1460.004237
ORF1ab/nsp6110L110del1ctAct-11B.1.1600.000031
ORF1ab/nsp6110L110LCtaTta11B.1.160.330.004425
ORF1ab/nsp6110L110PcTacCa11B.1.1770.000013
ORF1ab/nsp6110L110LCtaTta11B.1.177.210.000076
ORF1ab/nsp6110L110LCtaTta11B.1.177.240.001295
ORF1ab/nsp6110L110LCtaTta11B.1.177.870.000728
ORF1ab/nsp6110L110LCtaTta11B.1.2210.000071
ORF1ab/nsp6110L110LCtaTta11B.1.2400.000216
ORF1ab/nsp6110L110LCtaTta11B.1.258.140.00098
ORF1ab/nsp6110L110LCtaTta11B.1.3240.001605
ORF1ab/nsp6110L110LctActG11B.1.3380.008621
ORF1ab/nsp6110L110ICtaAta11B.1.3490.000715
ORF1ab/nsp6110L110LCtaTta11B.1.36.20.010753
ORF1ab/nsp6110L110LctActG11B.1.3690.000285
ORF1ab/nsp6110L110del1ctAct-11B.1.3720.010989
ORF1ab/nsp6110L110QcTacAa11B.1.4130.004255
ORF1ab/nsp6110L110PcTacCa11B.1.4290.000024
ORF1ab/nsp6110L110LCtaTta11B.1.4590.004082
ORF1ab/nsp6110L110LCtaTta11B.1.4700.001404
ORF1ab/nsp6110L110LCtaTta11B.1.4990.00105
ORF1ab/nsp6110L110LCtaTta11B.1.5170.000427
ORF1ab/nsp6110L110YCTATAC11B.1.5240.001406
ORF1ab/nsp6110L110LCtaTta11B.1.5250.000113
ORF1ab/nsp6110L110LCtaTta11B.1.5280.047619
ORF1ab/nsp6110L110LCtaTta11B.1.5750.000303
ORF1ab/nsp6110L110LCtaTta11B.1.5950.000261
ORF1ab/nsp6110L110del1ctAct-11B.1.5960.000087
ORF1ab/nsp6110L110del1cTac-a11B.1.617.10.000129
ORF1ab/nsp6110L110del1ctAct-11B.1.617.20.000004
ORF1ab/nsp6110L110delCTA---11B.1.6300.005236
ORF1ab/nsp6110L110QcTacAa11C.350.000774
ORF1ab/nsp6110L110QcTacAa11D.20.000075
ORF1ab/nsp6110L110delCTA---11N.40.004255
ORF1ab/nsp6110L110CCTATGT11P.1.140.000048
ORF1ab/nsp6110L110XCTaTGa11P.1.140.000048
ORF1ab/nsp6110L110FCtATtT11P.1.140.000048
ORF1ab/nsp6110L110VCtaGta11P.1.20.001156
ORF1ab/nsp6110L110LCtaTta11P.1.30.034483
ORF1ab/nsp6110L110LCtaTta11R.10.00009