CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp6 : CodonNum = 11

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp611H11QH3580QnonsyncaCcaA20760207480.99942211003-11005
ORF1ab/nsp611H11QH3580QnonsyncaCcaG20760120.00057803511003-11005
ORF1ab/nsp611H11YH3580YnonsynCacTac49464946111003-11005
ORF1ab/nsp611H11HH3580HsyncaCcaT568568111003-11005
ORF1ab/nsp611H11NH3580NnonsynCacAac6565111003-11005
ORF1ab/nsp611H11delH3580deldelCAC---2626111003-11005
ORF1ab/nsp611H11RH3580RnonsyncAccGc17160.94117611003-11005
ORF1ab/nsp611H11RH3580RnonsyncACcGT1710.058823511003-11005
ORF1ab/nsp611H11PH3580PnonsyncAccCc1616111003-11005
ORF1ab/nsp611H11DH3580DnonsynCacGac99111003-11005
ORF1ab/nsp611H11LH3580LnonsyncAccTc44111003-11005
ORF1ab/nsp611H11del1H3580del1delCac-ac420.511003-11005
ORF1ab/nsp611H11del1H3580del1delcaCca-420.511003-11005
ORF1ab/nsp611H11KH3580KnonsynCaCAaG210.511003-11005
ORF1ab/nsp611H11KH3580KnonsynCaCAaA210.511003-11005
ORF1ab/nsp611H11TH3580TnonsynCAcACc11111003-11005
ORF1ab/nsp611H11del2H3580del2delCAc--c11111003-11005
ORF1ab/nsp611H11GH3580GnonsynCAcGGc11111003-11005
ORF1ab/nsp611H11AH3580AnonsynCAcGCc11111003-11005

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp611H11QcaCcaA2074820760All0.003968
ORF1ab/nsp611H11QcaCcaG1220760All0.000002
ORF1ab/nsp611H11QcaCcaA85878588B.1.617.20.032334
ORF1ab/nsp611H11QcaCcaG18588B.1.617.20.000004
ORF1ab/nsp611H11YCacTac49464946All0.000946
ORF1ab/nsp611H11QcaCcaA37933793AY.350.883943
ORF1ab/nsp611H11QcaCcaA19201920A.2.50.958084
ORF1ab/nsp611H11QcaCcaA17051705AY.480.793023
ORF1ab/nsp611H11QcaCcaA16661666B.1.6230.893777
ORF1ab/nsp611H11YCacTac764764AY.40.001189
ORF1ab/nsp611H11YCacTac672672AY.1030.004172
ORF1ab/nsp611H11QcaCcaA610610A.2.5.20.959119
ORF1ab/nsp611H11QcaCcaA570570AY.16.10.267857
ORF1ab/nsp611H11HcaCcaT568568All0.000109
ORF1ab/nsp611H11YCacTac529529B.1.1.70.000474
ORF1ab/nsp611H11QcaCcaA315315B.1.1.2650.993691
ORF1ab/nsp611H11YCacTac284284B.1.617.20.001069
ORF1ab/nsp611H11YCacTac270270AY.430.001196
ORF1ab/nsp611H11QcaCcaA202202A.2.5.10.971154
ORF1ab/nsp611H11YCacTac160160AY.440.000974
ORF1ab/nsp611H11QcaCcaA159159AY.130.025596
ORF1ab/nsp611H11YCacTac153153AY.30.001522
ORF1ab/nsp611H11YCacTac150150AY.520.12215
ORF1ab/nsp611H11QcaCcaA142142AY.440.000864
ORF1ab/nsp611H11HcaCcaT138138B.1.1.70.000124
ORF1ab/nsp611H11YCacTac132132B.1.617.10.017023
ORF1ab/nsp611H11QcaCcaA124124AY.1080.136714
ORF1ab/nsp611H11YCacTac111111Q.10.014022
ORF1ab/nsp611H11YCacTac108108B.1.20.000951
ORF1ab/nsp611H11QcaCcaA104104AY.230.007254
ORF1ab/nsp611H11QcaCcaA8282A.2.5.30.845361
ORF1ab/nsp611H11YCacTac8080AY.250.000481
ORF1ab/nsp611H11YCacTac7373AY.260.002067
ORF1ab/nsp611H11YCacTac7171AY.200.002759
ORF1ab/nsp611H11YCacTac7070AY.390.00173
ORF1ab/nsp611H11QcaCcaA6767B.10.000614
ORF1ab/nsp611H11NCacAac6565All0.000012
ORF1ab/nsp611H11HcaCcaT6565AY.260.00184
ORF1ab/nsp611H11YCacTac5959B.1.1770.000777
ORF1ab/nsp611H11YCacTac5959B.1.3510.001754
ORF1ab/nsp611H11QcaCcaA5858AY.920.016662
ORF1ab/nsp611H11YCacTac5454B.1.10.00098
ORF1ab/nsp611H11YCacTac5353B.10.000485
ORF1ab/nsp611H11QcaCcaA5252AY.590.027542
ORF1ab/nsp611H11YCacTac4848AY.50.000991
ORF1ab/nsp611H11QcaCcaA4747AY.680.012866
ORF1ab/nsp611H11YCacTac4545B.1.4270.002272
ORF1ab/nsp611H11HcaCcaT4343B.1.5990.156934
ORF1ab/nsp611H11HcaCcaT4242B.1.617.20.000158
ORF1ab/nsp611H11HcaCcaT4040AY.40.000062
ORF1ab/nsp611H11QcaCcaA3940AY.430.000173
ORF1ab/nsp611H11QcaCcaG140AY.430.000004
ORF1ab/nsp611H11HcaCcaT3939B.1.20.000343
ORF1ab/nsp611H11QcaCcaA3636AY.660.038503
ORF1ab/nsp611H11QcaCcaA3636AY.980.002844
ORF1ab/nsp611H11QcaCcaA3535AY.190.039909
ORF1ab/nsp611H11QcaCcaA3333AY.520.026873
ORF1ab/nsp611H11YCacTac3232AY.1020.000848
ORF1ab/nsp611H11YCacTac2929AY.540.002765
ORF1ab/nsp611H11YCacTac2828AY.4.20.000607
ORF1ab/nsp611H11YCacTac2727AY.1180.001692
ORF1ab/nsp611H11YCacTac2727AY.9.20.000992
ORF1ab/nsp611H11QcaCcaA2727B.1.3240.043339
ORF1ab/nsp611H11YCacTac2727P.10.000425
ORF1ab/nsp611H11delCAC---2626All0.000005
ORF1ab/nsp611H11YCacTac2626AY.140.002288
ORF1ab/nsp611H11QcaCcaA2626AY.370.008217
ORF1ab/nsp611H11YCacTac2222B.1.5260.000517
ORF1ab/nsp611H11YCacTac2020AY.1200.000744
ORF1ab/nsp611H11QcaCcaA2020AY.5.40.005534
ORF1ab/nsp611H11HcaCcaT1919AY.250.000114
ORF1ab/nsp611H11HcaCcaT1919B.10.000174
ORF1ab/nsp611H11NCacAac1919B.1.1.70.000017
ORF1ab/nsp611H11QcaCcaA1818AY.1160.005162
ORF1ab/nsp611H11YCacTac1818AY.290.000284
ORF1ab/nsp611H11YCacTac1818AY.610.001886
ORF1ab/nsp611H11RcAccGc1617All0.000003
ORF1ab/nsp611H11RcACcGT117All0
ORF1ab/nsp611H11QcaCcaA1717AY.540.001621
ORF1ab/nsp611H11YCacTac1717AY.980.001343
ORF1ab/nsp611H11YCacTac1717B.1.6370.001242
ORF1ab/nsp611H11PcAccCc1616All0.000003
ORF1ab/nsp611H11YCacTac1515AY.330.001002
ORF1ab/nsp611H11YCacTac1515AY.530.004313
ORF1ab/nsp611H11YCacTac1515AY.60.000617
ORF1ab/nsp611H11HcaCcaT1414B.1.177.600.003058
ORF1ab/nsp611H11YCacTac1414B.1.4290.000329
ORF1ab/nsp611H11YCacTac1414C.370.001625
ORF1ab/nsp611H11HcaCcaT1313AY.1030.000081
ORF1ab/nsp611H11YCacTac1313AY.230.000907
ORF1ab/nsp611H11YCacTac1313AY.9.10.001088
ORF1ab/nsp611H11YCacTac1313B.1.177.860.002385
ORF1ab/nsp611H11HcaCcaT1212AY.440.000073
ORF1ab/nsp611H11YCacTac1212AY.98.10.000581
ORF1ab/nsp611H11YCacTac1212B.1.1.5190.000477
ORF1ab/nsp611H11YCacTac1212B.1.1600.000374
ORF1ab/nsp611H11YCacTac1111AY.1190.000388
ORF1ab/nsp611H11YCacTac1111B.1.4280.011224
ORF1ab/nsp611H11QcaCcaA1111B.1.5740.023656
ORF1ab/nsp611H11QcaCcaA1010AY.470.000311
ORF1ab/nsp611H11YCacTac1010AY.750.00056
ORF1ab/nsp611H11YCacTac1010AY.99.20.000922
ORF1ab/nsp611H11DCacGac99All0.000002
ORF1ab/nsp611H11YCacTac99AY.1000.000414
ORF1ab/nsp611H11HcaCcaT99AY.1020.000239
ORF1ab/nsp611H11QcaCcaA99AY.1210.001218
ORF1ab/nsp611H11QcaCcaA99AY.240.003879
ORF1ab/nsp611H11QcaCcaA99AY.780.013867
ORF1ab/nsp611H11YCacTac99B.1.360.001313
ORF1ab/nsp611H11YCacTac99B.1.6210.000797
ORF1ab/nsp611H11QcaCcaA88AY.1030.00005
ORF1ab/nsp611H11YCacTac88AY.1140.001849
ORF1ab/nsp611H11YCacTac88AY.1170.000676
ORF1ab/nsp611H11YCacTac88AY.270.000518
ORF1ab/nsp611H11HcaCcaT88AY.290.000126
ORF1ab/nsp611H11QcaCcaA88AY.770.009019
ORF1ab/nsp611H11YCacTac88B.1.2580.000532
ORF1ab/nsp611H11YCacTac88P.1.140.000382
ORF1ab/nsp611H11YCacTac77AY.340.000679
ORF1ab/nsp611H11YCacTac77AY.46.40.001152
ORF1ab/nsp611H11YCacTac77AY.46.60.000505
ORF1ab/nsp611H11QcaCcaA77AY.98.10.000339
ORF1ab/nsp611H11HcaCcaT77B.1.10.000127
ORF1ab/nsp611H11YCacTac77B.1.1.1360.148936
ORF1ab/nsp611H11YCacTac77B.1.1.2140.000388
ORF1ab/nsp611H11delCAC---77B.1.1.70.000006
ORF1ab/nsp611H11YCacTac66AY.1070.002796
ORF1ab/nsp611H11YCacTac66AY.1100.000676
ORF1ab/nsp611H11QcaCcaA66AY.1180.000376
ORF1ab/nsp611H11QcaCcaA66AY.250.000036
ORF1ab/nsp611H11HcaCcaT66AY.30.00006
ORF1ab/nsp611H11YCacTac66AY.420.000241
ORF1ab/nsp611H11HcaCcaT66AY.430.000027
ORF1ab/nsp611H11YCacTac66AY.450.00073
ORF1ab/nsp611H11QcaCcaA66AY.550.005505
ORF1ab/nsp611H11QcaCcaA66AY.640.003571
ORF1ab/nsp611H11YCacTac66AY.75.10.001082
ORF1ab/nsp611H11QcaCcaA66AY.870.004996
ORF1ab/nsp611H11YCacTac66AY.90.000406
ORF1ab/nsp611H11YCacTac66AY.920.001724
ORF1ab/nsp611H11PcAccCc66B.1.1.70.000005
ORF1ab/nsp611H11QcaCcaA66B.1.1600.000187
ORF1ab/nsp611H11HcaCcaT66B.1.1600.000187
ORF1ab/nsp611H11HcaCcaT66B.1.1770.000079
ORF1ab/nsp611H11YCacTac66B.1.177.350.004147
ORF1ab/nsp611H11YCacTac66B.1.177.750.006243
ORF1ab/nsp611H11YCacTac66B.1.2210.000426
ORF1ab/nsp611H11HcaCcaT66B.1.5260.000141
ORF1ab/nsp611H11YCacTac66B.1.5960.000523
ORF1ab/nsp611H11QcaCcaA66B.1.617.10.000774
ORF1ab/nsp611H11YCacTac55AY.10.001979
ORF1ab/nsp611H11YCacTac55AY.220.01046
ORF1ab/nsp611H11HcaCcaT55AY.450.000608
ORF1ab/nsp611H11QcaCcaA55AY.450.000608
ORF1ab/nsp611H11YCacTac55AY.470.000156
ORF1ab/nsp611H11QcaCcaA55AY.610.000524
ORF1ab/nsp611H11QcaCcaA55AY.620.002179
ORF1ab/nsp611H11YCacTac55AY.740.000578
ORF1ab/nsp611H11YCacTac55AY.930.001365
ORF1ab/nsp611H11QcaCcaA55B0.000639
ORF1ab/nsp611H11NCacAac55B.10.000046
ORF1ab/nsp611H11YCacTac55B.1.1.4340.001743
ORF1ab/nsp611H11YCacTac55B.1.1.630.001929
ORF1ab/nsp611H11QcaCcaA45B.1.1.70.000004
ORF1ab/nsp611H11QcaCcaG15B.1.1.70.000001
ORF1ab/nsp611H11YCacTac55B.1.2340.00066
ORF1ab/nsp611H11HcaCcaT55B.1.258.170.00052
ORF1ab/nsp611H11YCacTac55B.1.258.170.00052
ORF1ab/nsp611H11QcaCcaA55B.1.3670.003962
ORF1ab/nsp611H11YCacTac55B.1.5230.012255
ORF1ab/nsp611H11YCacTac55B.1.5490.035971
ORF1ab/nsp611H11HcaCcaT55P.10.000079
ORF1ab/nsp611H11LcAccTc44All0.000001
ORF1ab/nsp611H11del1Cac-ac24All0
ORF1ab/nsp611H11del1caCca-24All0
ORF1ab/nsp611H11QcaCcaA44AY.1000.000184
ORF1ab/nsp611H11YCacTac44AY.1130.00057
ORF1ab/nsp611H11YCacTac44AY.20.001425
ORF1ab/nsp611H11NCacAac44AY.250.000024
ORF1ab/nsp611H11YCacTac44AY.370.001264
ORF1ab/nsp611H11delCAC---44AY.40.000006
ORF1ab/nsp611H11QcaCcaA44AY.40.000006
ORF1ab/nsp611H11YCacTac44AY.4.50.00043
ORF1ab/nsp611H11YCacTac44AY.460.000416
ORF1ab/nsp611H11QcaCcaA44AY.9.20.000147
ORF1ab/nsp611H11HcaCcaT44AY.9.20.000147
ORF1ab/nsp611H11YCacTac44AY.910.002922
ORF1ab/nsp611H11YCacTac44B.1.1.2100.022857
ORF1ab/nsp611H11YCacTac44B.1.1.280.001245
ORF1ab/nsp611H11YCacTac44B.1.1.3480.003185
ORF1ab/nsp611H11YCacTac44B.1.1.4160.00362
ORF1ab/nsp611H11YCacTac44B.1.1.700.001364
ORF1ab/nsp611H11YCacTac44B.1.177.70.000659
ORF1ab/nsp611H11YCacTac44B.1.258.50.035088
ORF1ab/nsp611H11HcaCcaT44B.1.3510.000119
ORF1ab/nsp611H11QcaCcaA34B.1.4290.000071
ORF1ab/nsp611H11QcaCcaG14B.1.4290.000024
ORF1ab/nsp611H11YCacTac44B.1.4700.005618
ORF1ab/nsp611H11YCacTac44D.20.0003
ORF1ab/nsp611H11YCacTac44N.30.023256
ORF1ab/nsp611H11QcaCcaA230.111111
ORF1ab/nsp611H11QcaCcaG130.055556
ORF1ab/nsp611H11QcaCcaA33AY.1170.000254
ORF1ab/nsp611H11YCacTac33AY.1210.000406
ORF1ab/nsp611H11YCacTac33AY.160.001139
ORF1ab/nsp611H11QcaCcaA33AY.200.000117
ORF1ab/nsp611H11QcaCcaA33AY.220.006276
ORF1ab/nsp611H11YCacTac33AY.240.001293
ORF1ab/nsp611H11YCacTac33AY.3.10.000256
ORF1ab/nsp611H11NCacAac33AY.40.000005
ORF1ab/nsp611H11NCacAac33AY.50.000062
ORF1ab/nsp611H11NCacAac33AY.5.40.00083
ORF1ab/nsp611H11QcaCcaA33AY.530.000863
ORF1ab/nsp611H11QcaCcaA33AY.560.004815
ORF1ab/nsp611H11YCacTac33AY.590.001589
ORF1ab/nsp611H11YCacTac33AY.620.001307
ORF1ab/nsp611H11YCacTac33AY.690.00056
ORF1ab/nsp611H11QcaCcaA33AY.750.000168
ORF1ab/nsp611H11QcaCcaA33AY.880.002653
ORF1ab/nsp611H11YCacTac33B0.000383
ORF1ab/nsp611H11QcaCcaA33B.1.10.000054
ORF1ab/nsp611H11YCacTac33B.1.1.1980.004405
ORF1ab/nsp611H11YCacTac33B.1.1.2160.002671
ORF1ab/nsp611H11NCacAac33B.1.1.5190.000119
ORF1ab/nsp611H11YCacTac33B.1.177.120.000455
ORF1ab/nsp611H11RcAccGc33B.1.20.000026
ORF1ab/nsp611H11HcaCcaT33B.1.2210.000213
ORF1ab/nsp611H11YCacTac33B.1.2430.000209
ORF1ab/nsp611H11YCacTac33B.1.3360.007317
ORF1ab/nsp611H11YCacTac33B.1.36.170.001482
ORF1ab/nsp611H11YCacTac33B.1.4990.003151
ORF1ab/nsp611H11YCacTac33B.1.5750.00091
ORF1ab/nsp611H11QcaCcaG33C.350.002322
ORF1ab/nsp611H11YCacTac33Q.80.000495
ORF1ab/nsp611H11NCacAac220.111111
ORF1ab/nsp611H11KCaCAaA120.055556
ORF1ab/nsp611H11KCaCAaG120.055556
ORF1ab/nsp611H11YCacTac22A0.000774
ORF1ab/nsp611H11KCaCAaA12All0
ORF1ab/nsp611H11KCaCAaG12All0
ORF1ab/nsp611H11QcaCcaA22AY.1010.000981
ORF1ab/nsp611H11QcaCcaA22AY.1060.00067
ORF1ab/nsp611H11QcaCcaA22AY.110.002677
ORF1ab/nsp611H11QcaCcaA22AY.120.000632
ORF1ab/nsp611H11HcaCcaT22AY.120.000632
ORF1ab/nsp611H11YCacTac22AY.130.000322
ORF1ab/nsp611H11NCacAac22AY.130.000322
ORF1ab/nsp611H11YCacTac22AY.16.10.00094
ORF1ab/nsp611H11HcaCcaT22AY.200.000078
ORF1ab/nsp611H11HcaCcaT22AY.330.000134
ORF1ab/nsp611H11YCacTac22AY.360.000296
ORF1ab/nsp611H11YCacTac22AY.380.000999
ORF1ab/nsp611H11YCacTac22AY.39.10.000079
ORF1ab/nsp611H11HcaCcaT22AY.4.40.000818
ORF1ab/nsp611H11QcaCcaA22AY.420.00008
ORF1ab/nsp611H11PcAccCc22AY.430.000009
ORF1ab/nsp611H11NCacAac22AY.440.000012
ORF1ab/nsp611H11NCacAac22AY.470.000062
ORF1ab/nsp611H11QcaCcaA22AY.700.000417
ORF1ab/nsp611H11QcaCcaA22AY.710.00095
ORF1ab/nsp611H11YCacTac22AY.730.001331
ORF1ab/nsp611H11YCacTac22AY.790.002421
ORF1ab/nsp611H11QcaCcaA22AY.820.002714
ORF1ab/nsp611H11YCacTac22AY.850.000854
ORF1ab/nsp611H11QcaCcaA22AY.930.000546
ORF1ab/nsp611H11HcaCcaT22AY.930.000546
ORF1ab/nsp611H11DCacGac22B.10.000018
ORF1ab/nsp611H11YCacTac22B.1.1.1760.000879
ORF1ab/nsp611H11YCacTac22B.1.1.3180.000604
ORF1ab/nsp611H11YCacTac22B.1.1.3540.008772
ORF1ab/nsp611H11QcaCcaA22B.1.1570.00597
ORF1ab/nsp611H11YCacTac22B.1.177.450.000762
ORF1ab/nsp611H11YCacTac22B.1.177.600.000437
ORF1ab/nsp611H11YCacTac22B.1.177.620.002384
ORF1ab/nsp611H11YCacTac22B.1.177.810.000379
ORF1ab/nsp611H11QcaCcaA22B.1.20.000018
ORF1ab/nsp611H11QcaCcaG22B.1.2100.004264
ORF1ab/nsp611H11QcaCcaA22B.1.2140.007326
ORF1ab/nsp611H11QcaCcaA22B.1.2340.000264
ORF1ab/nsp611H11QcaCcaA22B.1.2390.002442
ORF1ab/nsp611H11HcaCcaT22B.1.2390.002442
ORF1ab/nsp611H11QcaCcaA22B.1.36.170.000988
ORF1ab/nsp611H11YCacTac22B.1.36.80.002
ORF1ab/nsp611H11YCacTac22B.1.4090.001563
ORF1ab/nsp611H11QcaCcaG12B.1.4270.00005
ORF1ab/nsp611H11QcaCcaA12B.1.4270.00005
ORF1ab/nsp611H11HcaCcaT22B.1.4290.000047
ORF1ab/nsp611H11DCacGac22B.1.4290.000047
ORF1ab/nsp611H11RcAccGc22B.1.4290.000047
ORF1ab/nsp611H11NCacAac22B.1.4290.000047
ORF1ab/nsp611H11YCacTac22B.1.438.10.000215
ORF1ab/nsp611H11YCacTac22B.1.466.20.000782
ORF1ab/nsp611H11YCacTac22B.1.4970.00063
ORF1ab/nsp611H11YCacTac22B.1.5090.001732
ORF1ab/nsp611H11QcaCcaA22B.1.5260.000047
ORF1ab/nsp611H11PcAccCc22B.1.5580.009132
ORF1ab/nsp611H11RcAccGc22B.1.5580.009132
ORF1ab/nsp611H11YCacTac22B.1.5610.000794
ORF1ab/nsp611H11YCacTac22B.1.575.10.004878
ORF1ab/nsp611H11YCacTac22B.1.5880.00182
ORF1ab/nsp611H11YCacTac22B.1.5950.000522
ORF1ab/nsp611H11NCacAac22B.1.617.20.000008
ORF1ab/nsp611H11YCacTac22B.1.6280.000705
ORF1ab/nsp611H11YCacTac22B.150.035088
ORF1ab/nsp611H11YCacTac22C.10.004785
ORF1ab/nsp611H11YCacTac22Q.30.00029
ORF1ab/nsp611H11YCacTac22R.10.00018
ORF1ab/nsp611H11QcaCcaA11A0.000387
ORF1ab/nsp611H11YCacTac11A.20.000662
ORF1ab/nsp611H11YCacTac11A.2.20.001689
ORF1ab/nsp611H11QcaCcaA11A.2.40.003367
ORF1ab/nsp611H11YCacTac11AA.60.016129
ORF1ab/nsp611H11YCacTac11AB.10.008197
ORF1ab/nsp611H11YCacTac11AD.20.000219
ORF1ab/nsp611H11ACAcGCc11All0
ORF1ab/nsp611H11TCAcACc11All0
ORF1ab/nsp611H11del2CAc--c11All0
ORF1ab/nsp611H11GCAcGGc11All0
ORF1ab/nsp611H11QcaCcaA11AU.20.002421
ORF1ab/nsp611H11YCacTac11AU.30.00211
ORF1ab/nsp611H11QcaCcaA11AY.100.00053
ORF1ab/nsp611H11YCacTac11AY.1010.00049
ORF1ab/nsp611H11NCacAac11AY.1030.000006
ORF1ab/nsp611H11YCacTac11AY.1060.000335
ORF1ab/nsp611H11YCacTac11AY.1080.001103
ORF1ab/nsp611H11NCacAac11AY.1090.00074
ORF1ab/nsp611H11QcaCcaA11AY.1100.000113
ORF1ab/nsp611H11NCacAac11AY.1130.000142
ORF1ab/nsp611H11YCacTac11AY.1160.000287
ORF1ab/nsp611H11YCacTac11AY.116.10.000311
ORF1ab/nsp611H11NCacAac11AY.1190.000035
ORF1ab/nsp611H11HcaCcaT11AY.1190.000035
ORF1ab/nsp611H11YCacTac11AY.120.000316
ORF1ab/nsp611H11HcaCcaT11AY.1200.000037
ORF1ab/nsp611H11PcAccCc11AY.120.10.000321
ORF1ab/nsp611H11HcaCcaT11AY.120.20.001285
ORF1ab/nsp611H11YCacTac11AY.120.2.10.000498
ORF1ab/nsp611H11HcaCcaT11AY.160.00038
ORF1ab/nsp611H11HcaCcaT11AY.230.00007
ORF1ab/nsp611H11YCacTac11AY.23.10.000417
ORF1ab/nsp611H11QcaCcaA11AY.270.000065
ORF1ab/nsp611H11QcaCcaA11AY.280.00189
ORF1ab/nsp611H11QcaCcaA11AY.30.00001
ORF1ab/nsp611H11delCAC---11AY.30.00001
ORF1ab/nsp611H11YCacTac11AY.300.000396
ORF1ab/nsp611H11QcaCcaA11AY.320.000532
ORF1ab/nsp611H11YCacTac11AY.320.000532
ORF1ab/nsp611H11QcaCcaA11AY.330.000067
ORF1ab/nsp611H11NCacAac11AY.330.000067
ORF1ab/nsp611H11QcaCcaA11AY.380.000499
ORF1ab/nsp611H11HcaCcaT11AY.380.000499
ORF1ab/nsp611H11HcaCcaT11AY.390.000025
ORF1ab/nsp611H11del1Cac-ac11AY.40.000002
ORF1ab/nsp611H11DCacGac11AY.40.000002
ORF1ab/nsp611H11del1Cac-ac11AY.4.50.000107
ORF1ab/nsp611H11QcaCcaA11AY.410.000294
ORF1ab/nsp611H11YCacTac11AY.410.000294
ORF1ab/nsp611H11delCAC---11AY.430.000004
ORF1ab/nsp611H11RcAccGc11AY.430.000004
ORF1ab/nsp611H11ACAcGCc11AY.430.000004
ORF1ab/nsp611H11LcAccTc11AY.440.000006
ORF1ab/nsp611H11RcAccGc11AY.440.000006
ORF1ab/nsp611H11PcAccCc11AY.460.000104
ORF1ab/nsp611H11QcaCcaA11AY.460.000104
ORF1ab/nsp611H11RcAccGc11AY.460.000104
ORF1ab/nsp611H11HcaCcaT11AY.470.000031
ORF1ab/nsp611H11YCacTac11AY.5.30.000337
ORF1ab/nsp611H11QcaCcaA11AY.5.30.000337
ORF1ab/nsp611H11YCacTac11AY.5.40.000277
ORF1ab/nsp611H11YCacTac11AY.510.000909
ORF1ab/nsp611H11QcaCcaA11AY.510.000909
ORF1ab/nsp611H11NCacAac11AY.550.000917
ORF1ab/nsp611H11del1caCca-11AY.560.001605
ORF1ab/nsp611H11YCacTac11AY.580.000907
ORF1ab/nsp611H11QcaCcaA11AY.580.000907
ORF1ab/nsp611H11HcaCcaT11AY.590.00053
ORF1ab/nsp611H11HcaCcaT11AY.60.000041
ORF1ab/nsp611H11YCacTac11AY.600.000938
ORF1ab/nsp611H11PcAccCc11AY.610.000105
ORF1ab/nsp611H11YCacTac11AY.630.000387
ORF1ab/nsp611H11YCacTac11AY.650.000533
ORF1ab/nsp611H11delCAC---11AY.660.00107
ORF1ab/nsp611H11QcaCcaA11AY.670.000464
ORF1ab/nsp611H11YCacTac11AY.680.000274
ORF1ab/nsp611H11YCacTac11AY.700.000209
ORF1ab/nsp611H11YCacTac11AY.710.000475
ORF1ab/nsp611H11QcaCcaA11AY.740.000116
ORF1ab/nsp611H11YCacTac11AY.80.000606
ORF1ab/nsp611H11YCacTac11AY.810.001992
ORF1ab/nsp611H11YCacTac11AY.840.000437
ORF1ab/nsp611H11DCacGac11AY.840.000437
ORF1ab/nsp611H11QcaCcaA11AY.850.000427
ORF1ab/nsp611H11YCacTac11AY.860.00083
ORF1ab/nsp611H11HcaCcaT11AY.90.000068
ORF1ab/nsp611H11PcAccCc11AY.9.20.000037
ORF1ab/nsp611H11YCacTac11AY.91.10.004065
ORF1ab/nsp611H11QcaCcaA11AY.950.000761
ORF1ab/nsp611H11QcaCcaA11AY.960.002075
ORF1ab/nsp611H11YCacTac11AY.960.002075
ORF1ab/nsp611H11DCacGac11AY.990.001049
ORF1ab/nsp611H11YCacTac11AY.990.001049
ORF1ab/nsp611H11QcaCcaA11AY.99.20.000092
ORF1ab/nsp611H11PcAccCc11B.10.000009
ORF1ab/nsp611H11LcAccTc11B.10.000009
ORF1ab/nsp611H11RcAccGc11B.10.000009
ORF1ab/nsp611H11delCAC---11B.1.10.000018
ORF1ab/nsp611H11NCacAac11B.1.10.000018
ORF1ab/nsp611H11YCacTac11B.1.1.1180.010204
ORF1ab/nsp611H11NCacAac11B.1.1.1630.007634
ORF1ab/nsp611H11YCacTac11B.1.1.1650.015385
ORF1ab/nsp611H11QcaCcaA11B.1.1.1760.000439
ORF1ab/nsp611H11HcaCcaT11B.1.1.2070.001182
ORF1ab/nsp611H11YCacTac11B.1.1.2070.001182
ORF1ab/nsp611H11HcaCcaT11B.1.1.2140.000055
ORF1ab/nsp611H11QcaCcaA11B.1.1.2200.001859
ORF1ab/nsp611H11YCacTac11B.1.1.2200.001859
ORF1ab/nsp611H11RcAccGc11B.1.1.2200.001859
ORF1ab/nsp611H11QcaCcaA11B.1.1.2240.014286
ORF1ab/nsp611H11HcaCcaT11B.1.1.280.000311
ORF1ab/nsp611H11YCacTac11B.1.1.2840.000107
ORF1ab/nsp611H11YCacTac11B.1.1.2890.002083
ORF1ab/nsp611H11YCacTac11B.1.1.2910.000742
ORF1ab/nsp611H11QcaCcaA11B.1.1.2940.001266
ORF1ab/nsp611H11delCAC---11B.1.1.3060.000438
ORF1ab/nsp611H11YCacTac11B.1.1.3060.000438
ORF1ab/nsp611H11YCacTac11B.1.1.3100.015152
ORF1ab/nsp611H11YCacTac11B.1.1.3170.000412
ORF1ab/nsp611H11QcaCcaA11B.1.1.3180.000302
ORF1ab/nsp611H11YCacTac11B.1.1.3260.001761
ORF1ab/nsp611H11YCacTac11B.1.1.330.000421
ORF1ab/nsp611H11QcaCcaA11B.1.1.3510.002793
ORF1ab/nsp611H11YCacTac11B.1.1.3550.015385
ORF1ab/nsp611H11delCAC---11B.1.1.3690.000446
ORF1ab/nsp611H11YCacTac11B.1.1.3720.000689
ORF1ab/nsp611H11YCacTac11B.1.1.400.034483
ORF1ab/nsp611H11delCAC---11B.1.1.4090.002833
ORF1ab/nsp611H11YCacTac11B.1.1.4090.002833
ORF1ab/nsp611H11YCacTac11B.1.1.500.000679
ORF1ab/nsp611H11YCacTac11B.1.1.530.013699
ORF1ab/nsp611H11del2CAc--c11B.1.1.70.000001
ORF1ab/nsp611H11RcAccGc11B.1.1.70.000001
ORF1ab/nsp611H11TCAcACc11B.1.1.70.000001
ORF1ab/nsp611H11YCacTac11B.1.110.30.000718
ORF1ab/nsp611H11YCacTac11B.1.1280.000635
ORF1ab/nsp611H11YCacTac11B.1.1390.000733
ORF1ab/nsp611H11YCacTac11B.1.1530.018868
ORF1ab/nsp611H11YCacTac11B.1.160.240.004425
ORF1ab/nsp611H11NCacAac11B.1.1770.000013
ORF1ab/nsp611H11delCAC---11B.1.177.150.000631
ORF1ab/nsp611H11HcaCcaT11B.1.177.210.000076
ORF1ab/nsp611H11YCacTac11B.1.177.210.000076
ORF1ab/nsp611H11YCacTac11B.1.177.40.000211
ORF1ab/nsp611H11delCAC---11B.1.177.40.000211
ORF1ab/nsp611H11YCacTac11B.1.177.430.001477
ORF1ab/nsp611H11HcaCcaT11B.1.177.430.001477
ORF1ab/nsp611H11YCacTac11B.1.177.440.000519
ORF1ab/nsp611H11QcaCcaA11B.1.177.730.000566
ORF1ab/nsp611H11delCAC---11B.1.177.90.001332
ORF1ab/nsp611H11YCacTac11B.1.1890.004292
ORF1ab/nsp611H11HcaCcaT11B.1.2080.04
ORF1ab/nsp611H11delCAC---11B.1.2100.002132
ORF1ab/nsp611H11QcaCcaA11B.1.2210.000071
ORF1ab/nsp611H11YCacTac11B.1.2400.000216
ORF1ab/nsp611H11HcaCcaT11B.1.258.200.015873
ORF1ab/nsp611H11YCacTac11B.1.258.40.003448
ORF1ab/nsp611H11YCacTac11B.1.2630.047619
ORF1ab/nsp611H11YCacTac11B.1.2650.001271
ORF1ab/nsp611H11YCacTac11B.1.3200.001245
ORF1ab/nsp611H11YCacTac11B.1.351.30.000876
ORF1ab/nsp611H11YCacTac11B.1.36.10.00114
ORF1ab/nsp611H11YCacTac11B.1.36.20.010753
ORF1ab/nsp611H11YCacTac11B.1.36.210.00216
ORF1ab/nsp611H11YCacTac11B.1.36.390.002217
ORF1ab/nsp611H11YCacTac11B.1.3620.001541
ORF1ab/nsp611H11YCacTac11B.1.3670.000792
ORF1ab/nsp611H11HcaCcaT11B.1.3670.000792
ORF1ab/nsp611H11HcaCcaT11B.1.3710.001122
ORF1ab/nsp611H11YCacTac11B.1.3750.00082
ORF1ab/nsp611H11HcaCcaT11B.1.3750.00082
ORF1ab/nsp611H11YCacTac11B.1.3960.000706
ORF1ab/nsp611H11YCacTac11B.1.3990.001934
ORF1ab/nsp611H11YCacTac11B.1.4000.000429
ORF1ab/nsp611H11YCacTac11B.1.4060.006061
ORF1ab/nsp611H11RcAccGc11B.1.4480.002625
ORF1ab/nsp611H11HcaCcaT11B.1.466.20.000391
ORF1ab/nsp611H11QcaCcaA11B.1.5060.02381
ORF1ab/nsp611H11HcaCcaT11B.1.5090.000866
ORF1ab/nsp611H11YCacTac11B.1.5240.001406
ORF1ab/nsp611H11GCAcGGc11B.1.5250.000113
ORF1ab/nsp611H11YCacTac11B.1.5250.000113
ORF1ab/nsp611H11DCacGac11B.1.5250.000113
ORF1ab/nsp611H11RcAccGc11B.1.5250.000113
ORF1ab/nsp611H11QcaCcaA11B.1.5540.004405
ORF1ab/nsp611H11YCacTac11B.1.5550.022222
ORF1ab/nsp611H11QcaCcaA11B.1.5610.000397
ORF1ab/nsp611H11YCacTac11B.1.5640.000426
ORF1ab/nsp611H11YCacTac11B.1.564.10.001577
ORF1ab/nsp611H11YCacTac11B.1.5820.000491
ORF1ab/nsp611H11HcaCcaT11B.1.5820.000491
ORF1ab/nsp611H11QcaCcaA11B.1.5950.000261
ORF1ab/nsp611H11NCacAac11B.1.5960.000087
ORF1ab/nsp611H11PcAccCc11B.1.5960.000087
ORF1ab/nsp611H11QcaCcaA11B.1.5960.000087
ORF1ab/nsp611H11HcaCcaT11B.1.5960.000087
ORF1ab/nsp611H11QcaCcaA11B.1.6090.000479
ORF1ab/nsp611H11del1caCca-11B.1.617.20.000004
ORF1ab/nsp611H11RcACcGT11B.1.617.20.000004
ORF1ab/nsp611H11LcAccTc11B.1.617.20.000004
ORF1ab/nsp611H11YCacTac11B.1.619.10.000641
ORF1ab/nsp611H11delCAC---11B.1.6210.000089
ORF1ab/nsp611H11HcaCcaT11B.1.6210.000089
ORF1ab/nsp611H11QcaCcaA11B.1.6280.000352
ORF1ab/nsp611H11YCacTac11B.1.6310.003367
ORF1ab/nsp611H11YCacTac11B.1.6330.041667
ORF1ab/nsp611H11YCacTac11B.110.005128
ORF1ab/nsp611H11HcaCcaT11B.3.10.001658
ORF1ab/nsp611H11YCacTac11B.390.002331
ORF1ab/nsp611H11YCacTac11B.40.002208
ORF1ab/nsp611H11YCacTac11B.400.000364
ORF1ab/nsp611H11QcaCcaA11B.520.010101
ORF1ab/nsp611H11QcaCcaA11B.610.005747
ORF1ab/nsp611H11HcaCcaT11C.230.005814
ORF1ab/nsp611H11YCacTac11C.270.018519
ORF1ab/nsp611H11YCacTac11C.360.000911
ORF1ab/nsp611H11NCacAac11C.36.30.000567
ORF1ab/nsp611H11QcaCcaA11C.370.000116
ORF1ab/nsp611H11YCacTac11C.40.01
ORF1ab/nsp611H11QcaCcaA11C.60.037037
ORF1ab/nsp611H11DCacGac11D.20.000075
ORF1ab/nsp611H11QcaCcaG11D.20.000075
ORF1ab/nsp611H11LcAccTc11D.20.000075
ORF1ab/nsp611H11RcAccGc11D.20.000075
ORF1ab/nsp611H11YCacTac11L.20.011364
ORF1ab/nsp611H11delCAC---11N.40.004255
ORF1ab/nsp611H11QcaCcaA11P.10.000016
ORF1ab/nsp611H11YCacTac11P.1.100.000269
ORF1ab/nsp611H11HcaCcaT11P.1.100.000269
ORF1ab/nsp611H11NCacAac11P.1.120.000484
ORF1ab/nsp611H11YCacTac11P.1.120.000484
ORF1ab/nsp611H11delCAC---11P.1.150.000232
ORF1ab/nsp611H11HcaCcaT11P.1.150.000232
ORF1ab/nsp611H11YCacTac11P.1.150.000232
ORF1ab/nsp611H11NCacAac11P.1.150.000232
ORF1ab/nsp611H11YCacTac11P.1.70.000319
ORF1ab/nsp611H11YCacTac11P.20.000187
ORF1ab/nsp611H11YCacTac11P.60.003145
ORF1ab/nsp611H11delCAC---11Q.10.000126
ORF1ab/nsp611H11YCacTac11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.