CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp6 | 106 | S106del | S3675del | del | TCT | --- | 1354686 | 1354686 | 1 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106T | S3675T | nonsyn | Tct | Act | 2725 | 2566 | 0.941651 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106T | S3675T | nonsyn | TcT | AcG | 2725 | 155 | 0.0568807 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106T | S3675T | nonsyn | TcT | AcC | 2725 | 3 | 0.00110092 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106T | S3675T | nonsyn | TcT | AcA | 2725 | 1 | 0.000366972 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106del2 | S3675del2 | del | TCt | --t | 545 | 485 | 0.889908 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106del2 | S3675del2 | del | TCT | --N | 545 | 58 | 0.106422 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106del2 | S3675del2 | del | tCT | t-- | 545 | 2 | 0.00366972 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106S | S3675S | syn | tcT | tcG | 540 | 298 | 0.551852 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106S | S3675S | syn | tcT | tcC | 540 | 173 | 0.32037 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106S | S3675S | syn | tcT | tcA | 540 | 63 | 0.116667 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106S | S3675S | syn | TCT | AGC | 540 | 3 | 0.00555556 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106S | S3675S | syn | TCt | AGt | 540 | 3 | 0.00555556 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106F | S3675F | nonsyn | tCt | tTt | 538 | 537 | 0.998141 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106F | S3675F | nonsyn | tCT | tTC | 538 | 1 | 0.00185874 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106K | S3675K | nonsyn | TCT | AAG | 228 | 227 | 0.995614 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106K | S3675K | nonsyn | TCT | AAA | 228 | 1 | 0.00438596 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106N | S3675N | nonsyn | TCt | AAt | 194 | 194 | 1 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106del1 | S3675del1 | del | TCT | -NN | 122 | 95 | 0.778689 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106del1 | S3675del1 | del | Tct | -ct | 122 | 22 | 0.180328 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106del1 | S3675del1 | del | tCt | t-t | 122 | 2 | 0.0163934 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106del1 | S3675del1 | del | tcT | tc- | 122 | 1 | 0.00819672 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106del1 | S3675del1 | del | TCt | -Nt | 122 | 1 | 0.00819672 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106del1 | S3675del1 | del | tCT | tT- | 122 | 1 | 0.00819672 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106P | S3675P | nonsyn | Tct | Cct | 90 | 90 | 1 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106Y | S3675Y | nonsyn | tCt | tAt | 42 | 42 | 1 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106A | S3675A | nonsyn | Tct | Gct | 36 | 36 | 1 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106C | S3675C | nonsyn | tCt | tGt | 20 | 17 | 0.85 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106C | S3675C | nonsyn | tCT | tGC | 20 | 3 | 0.15 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106X | S3675X | nonsyn | tCT | tAG | 12 | 11 | 0.916667 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106X | S3675X | nonsyn | tCT | tGA | 12 | 1 | 0.0833333 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106L | S3675L | nonsyn | TCt | CTt | 6 | 4 | 0.666667 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106L | S3675L | nonsyn | TCT | CTG | 6 | 1 | 0.166667 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106L | S3675L | nonsyn | tCT | tTG | 6 | 1 | 0.166667 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106V | S3675V | nonsyn | TCt | GTt | 4 | 2 | 0.5 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106V | S3675V | nonsyn | TCT | GTA | 4 | 2 | 0.5 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106G | S3675G | nonsyn | TCt | GGt | 3 | 3 | 1 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106I | S3675I | nonsyn | TCt | ATt | 1 | 1 | 1 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106W | S3675W | nonsyn | tCT | tGG | 1 | 1 | 1 | 11288-11290 |
ORF1ab/nsp6 | 106 | S106M | S3675M | nonsyn | TCT | ATG | 1 | 1 | 1 | 11288-11290 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1354686 | 1354686 | All | 0.2591 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1081650 | 1081650 | B.1.1.7 | 0.968318 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 61919 | 61919 | P.1 | 0.975471 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 41668 | 41668 | B.1.526 | 0.979387 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 31086 | 31086 | B.1.351 | 0.924078 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 20834 | 20834 | P.1.14 | 0.995889 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 13376 | 13376 | B.1.637 | 0.977421 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 8424 | 8424 | B.1.525 | 0.953265 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 8379 | 8379 | C.37 | 0.972493 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 7718 | 7718 | Q.1 | 0.974987 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6675 | 6675 | Q.3 | 0.968093 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6026 | 6026 | Q.8 | 0.993734 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6002 | 6002 | P.1.17 | 0.970883 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3952 | 3952 | P.1.15 | 0.918216 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3600 | 3600 | P.1.10 | 0.970089 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3216 | 3216 | B.1.1.318 | 0.970428 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3215 | 3215 | B.1.351.2 | 0.972769 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3162 | 3162 | B.1 | 0.028962 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3066 | 3066 | P.1.7 | 0.978927 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2979 | 2979 | B.1.1 | 0.054042 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 2566 | 2725 | All | 0.000491 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 155 | 2725 | All | 0.00003 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcC | 3 | 2725 | All | 0.000001 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcA | 1 | 2725 | All | 0 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2689 | 2689 | B.1.628 | 0.947498 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2653 | 2653 | P.1.16 | 0.992518 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2506 | 2506 | P.1.1 | 0.796061 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2116 | 2116 | Q.4 | 0.962256 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 2036 | 2076 | B.1.1.7 | 0.001823 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 38 | 2076 | B.1.1.7 | 0.000034 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcA | 1 | 2076 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcC | 1 | 2076 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1931 | 1931 | P.1.12 | 0.934656 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1843 | 1843 | B.1.1.176 | 0.809754 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1572 | 1572 | B.1.351.5 | 0.942446 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1541 | 1541 | B.1.619.1 | 0.988454 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1199 | 1199 | AZ.2 | 0.984401 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1152 | 1152 | AZ.1 | 0.999133 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1139 | 1139 | P.1.17.1 | 0.9965 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1133 | 1133 | B.1.351.3 | 0.992989 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1130 | 1130 | B.1.619 | 0.984321 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1101 | 1101 | P.1.13 | 0.989218 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1056 | 1056 | B.1.620 | 0.999054 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1015 | 1015 | P.1.4 | 0.991211 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 981 | 981 | B.1.214.2 | 0.588129 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 895 | 895 | Q.7 | 0.994444 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 840 | 840 | P.1.2 | 0.971098 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 630 | 630 | AZ.3 | 0.957447 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 611 | 611 | Q.2 | 0.374847 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 485 | 545 | All | 0.000093 |
ORF1ab/nsp6 | 106 | S106del2 | TCT | --N | 58 | 545 | All | 0.000011 |
ORF1ab/nsp6 | 106 | S106del2 | tCT | t-- | 2 | 545 | All | 0 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 298 | 540 | All | 0.000057 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 173 | 540 | All | 0.000033 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 63 | 540 | All | 0.000012 |
ORF1ab/nsp6 | 106 | S106S | TCt | AGt | 3 | 540 | All | 0.000001 |
ORF1ab/nsp6 | 106 | S106S | TCT | AGC | 3 | 540 | All | 0.000001 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 537 | 538 | All | 0.000103 |
ORF1ab/nsp6 | 106 | S106F | tCT | tTC | 1 | 538 | All | 0 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 513 | 513 | P.1.6 | 0.998054 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 452 | 490 | B.1.1.7 | 0.000405 |
ORF1ab/nsp6 | 106 | S106del2 | TCT | --N | 38 | 490 | B.1.1.7 | 0.000034 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 397 | 397 | AY.26 | 0.011239 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 393 | 393 | B.1.625 | 0.924706 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 382 | 382 | B.1.470 | 0.536517 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 367 | 367 | C.37.1 | 0.960733 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 263 | 313 | AY.4 | 0.000409 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 50 | 313 | AY.4 | 0.000078 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 218 | 304 | P.1 | 0.003434 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 86 | 304 | P.1 | 0.001355 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 284 | 284 | B.1.634 | 0.972603 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 279 | 279 | AZ.4 | 0.936242 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 231 | 231 | C.1.2 | 0.982979 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 227 | 228 | All | 0.000043 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAA | 1 | 228 | All | 0 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 226 | 226 | AZ.5 | 0.792982 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 207 | 207 | P.1.9 | 0.995192 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 206 | 206 | P.1.8 | 0.985646 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 202 | 202 | B.1.1.528 | 0.971154 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 195 | 195 | AV.1 | 0.984848 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 194 | 194 | All | 0.000037 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 194 | 194 | B.1.241 | 0.157468 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 190 | 190 | B.1.630 | 0.994764 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 189 | 189 | B.1.375 | 0.154918 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 154 | 154 | B.1.177.73 | 0.087203 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 150 | 150 | Q.6 | 0.993377 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 144 | 144 | B.1.1.525 | 0.786885 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 143 | 143 | B.1.636 | 0.959732 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 129 | 129 | B.1.214.3 | 0.921429 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 95 | 122 | All | 0.000018 |
ORF1ab/nsp6 | 106 | S106del1 | Tct | -ct | 22 | 122 | All | 0.000004 |
ORF1ab/nsp6 | 106 | S106del1 | tCt | t-t | 2 | 122 | All | 0 |
ORF1ab/nsp6 | 106 | S106del1 | tcT | tc- | 1 | 122 | All | 0 |
ORF1ab/nsp6 | 106 | S106del1 | TCt | -Nt | 1 | 122 | All | 0 |
ORF1ab/nsp6 | 106 | S106del1 | tCT | tT- | 1 | 122 | All | 0 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 122 | 122 | P.1.10.1 | 0.99187 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 121 | 121 | AZ.2.1 | 0.98374 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 119 | 119 | AZ.6 | 1 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 112 | 112 | B.1.1 | 0.002032 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 112 | 112 | B.1.170 | 0.482759 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 107 | 107 | B.1.214.4 | 0.972727 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 106 | 107 | B.1.351 | 0.003151 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 1 | 107 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 101 | 101 | AY.4 | 0.000157 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 100 | 100 | P.1 | 0.001575 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 98 | 98 | P.1 | 0.001544 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 97 | 97 | P.1.11 | 0.989796 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 90 | 90 | All | 0.000017 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 81 | 81 | B.1.1.507 | 0.704348 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 81 | 81 | B.1.617.2 | 0.000305 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 77 | 77 | AY.44 | 0.000469 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 53 | 74 | B.1.1.7 | 0.000047 |
ORF1ab/nsp6 | 106 | S106del1 | Tct | -ct | 19 | 74 | B.1.1.7 | 0.000017 |
ORF1ab/nsp6 | 106 | S106del1 | TCt | -Nt | 1 | 74 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106del1 | tcT | tc- | 1 | 74 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 67 | 68 | B.1.1.7 | 0.00006 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAA | 1 | 68 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 67 | 67 | B.1.1.205 | 0.249071 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 65 | 65 | B.1.177.7 | 0.010715 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 59 | 59 | Q.5 | 1 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 57 | 57 | B.1.177 | 0.000751 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 57 | 57 | B.1.221 | 0.004049 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 56 | 56 | B | 0.007157 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 55 | 55 | B.1.1.7 | 0.000049 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 52 | 52 | AY.4 | 0.000081 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 48 | 48 | B.1.2 | 0.000423 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 46 | 46 | B.1.639 | 1 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 45 | 45 | B.1.243.1 | 1 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 44 | 44 | AY.43 | 0.000195 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 43 | 44 | B.1 | 0.000394 |
ORF1ab/nsp6 | 106 | S106F | tCT | tTC | 1 | 44 | B.1 | 0.000009 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 44 | 44 | B.1.1.524 | 0.916667 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 42 | 42 | All | 0.000008 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 42 | 42 | B.1.429 | 0.000988 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 41 | 41 | B.1.1.409 | 0.116147 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 39 | 39 | B.1.258.17 | 0.004055 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 37 | 37 | B.1.1.312 | 0.070746 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 36 | 36 | All | 0.000007 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 36 | 36 | L.3 | 0.12766 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 35 | 35 | B.1.623 | 0.018777 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 34 | 34 | AY.43 | 0.000151 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 21 | 32 | AY.25 | 0.000126 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 6 | 32 | AY.25 | 0.000036 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 5 | 32 | AY.25 | 0.00003 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 32 | 32 | B.1.346 | 0.04194 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 32 | 32 | B.1.36.29 | 0.016555 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 31 | 31 | B.1.1.28 | 0.009648 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 30 | 31 | B.1.525 | 0.003395 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcC | 1 | 31 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 29 | 29 | AY.25 | 0.000174 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 29 | 29 | B.1.1.519 | 0.001152 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 15 | 29 | C.37 | 0.001741 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 14 | 29 | C.37 | 0.001625 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 29 | 29 | P.1.3 | 1 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 12 | 28 | B.1.617.2 | 0.000045 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 11 | 28 | B.1.617.2 | 0.000041 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 5 | 28 | B.1.617.2 | 0.000019 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 28 | 28 | C.36.3.1 | 0.076087 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 27 | 27 | B.1.1.220 | 0.050186 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 27 | 27 | B.1.2 | 0.000238 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 25 | 25 | AY.29 | 0.000394 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 25 | 25 | B.1.160 | 0.00078 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 24 | 24 | B.1.429 | 0.000565 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 24 | 24 | P.1.10.2 | 1 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 23 | 23 | AY.68 | 0.006296 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 23 | 23 | Q.4 | 0.010459 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 22 | 22 | P.1.7 | 0.007024 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 21 | 21 | AY.116 | 0.006022 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 21 | 21 | B.1.1.161 | 0.074205 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 21 | 21 | B.1.1.306 | 0.009206 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 19 | 21 | B.1.526 | 0.000447 |
ORF1ab/nsp6 | 106 | S106del1 | Tct | -ct | 1 | 21 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 106 | S106del1 | tCt | t-t | 1 | 21 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 106 | S106C | tCt | tGt | 17 | 20 | All | 0.000003 |
ORF1ab/nsp6 | 106 | S106C | tCT | tGC | 3 | 20 | All | 0.000001 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp6 | 106 | S106del2 | TCT | --N | 11 | 19 | B.1.526 | 0.000259 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 8 | 19 | B.1.526 | 0.000188 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 19 | 19 | B.1.638 | 1 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 18 | 18 | B.1.237 | 0.089552 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 18 | 18 | B.1.596 | 0.001568 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 18 | 18 | B.1.609 | 0.008629 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 14 | 16 | B.1.177 | 0.000184 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 2 | 16 | B.1.177 | 0.000026 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 15 | 15 | A.2.5 | 0.007485 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 15 | 15 | C.37 | 0.001741 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 14 | 14 | C.37 | 0.001625 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 13 | 13 | B.1.469 | 0.046931 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 13 | 13 | P.1.5 | 1 |
ORF1ab/nsp6 | 106 | S106X | tCT | tAG | 11 | 12 | All | 0.000002 |
ORF1ab/nsp6 | 106 | S106X | tCT | tGA | 1 | 12 | All | 0 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 12 | 12 | AY.42 | 0.000483 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 12 | 12 | B.1.351.2 | 0.003631 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 12 | 12 | B.1.621 | 0.001062 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 9 | 11 | B.1 | 0.000082 |
ORF1ab/nsp6 | 106 | S106del2 | TCT | --N | 2 | 11 | B.1 | 0.000018 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 7 | 10 | AY.44 | 0.000043 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 3 | 10 | AY.44 | 0.000018 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 10 | 10 | B.1.1.294 | 0.012658 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 9 | 10 | P.1.14 | 0.00043 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 1 | 10 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 8 | 10 | P.1.15 | 0.001859 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 2 | 10 | P.1.15 | 0.000465 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 5 | 10 | P.1.4 | 0.004883 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 5 | 10 | P.1.4 | 0.004883 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 9 | 9 | A.2.5.2 | 0.014151 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp6 | 106 | S106C | tCt | tGt | 8 | 9 | B.1.1.7 | 0.000007 |
ORF1ab/nsp6 | 106 | S106C | tCT | tGC | 1 | 9 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 9 | 9 | Q.3 | 0.001305 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 8 | 8 | B.1.1.34 | 0.105263 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 8 | 8 | B.1.1.375 | 0.095238 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 7 | 7 | AS.1 | 0.066667 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 7 | 7 | AT.1 | 0.035897 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 7 | 7 | B.1.1.318 | 0.002112 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 7 | 7 | B.1.324 | 0.011236 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 7 | 7 | B.1.411 | 0.025926 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 7 | 7 | B.1.524 | 0.009845 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 7 | 7 | P.1.4 | 0.006836 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp6 | 106 | S106L | TCt | CTt | 4 | 6 | All | 0.000001 |
ORF1ab/nsp6 | 106 | S106L | tCT | tTG | 1 | 6 | All | 0 |
ORF1ab/nsp6 | 106 | S106L | TCT | CTG | 1 | 6 | All | 0 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 3 | 6 | B.1.1 | 0.000054 |
ORF1ab/nsp6 | 106 | S106del2 | TCT | --N | 3 | 6 | B.1.1 | 0.000054 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6 | 6 | B.1.1.10 | 0.006689 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 6 | 6 | B.1.1.432 | 0.007595 |
ORF1ab/nsp6 | 106 | S106X | tCT | tAG | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6 | 6 | B.1.139 | 0.004399 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6 | 6 | B.1.214 | 0.021978 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6 | 6 | B.1.258.11 | 0.002378 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 5 | 6 | B.1.526 | 0.000118 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 1 | 6 | B.1.526 | 0.000024 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 6 | 6 | B.1.586 | 0.065934 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 3 | 6 | B.1.625 | 0.007059 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 3 | 6 | B.1.625 | 0.007059 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 6 | 6 | P.1.10 | 0.001617 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 6 | 6 | P.1.4 | 0.005859 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | AY.56 | 0.008026 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 5 | 5 | AZ.2 | 0.004105 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 5 | 5 | B.1.1.231 | 0.01548 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 5 | 5 | B.1.1.416 | 0.004525 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 2 | 5 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 106 | S106S | TCT | AGC | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106S | TCt | AGt | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 5 | 5 | B.1.146 | 0.021186 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | B.1.157 | 0.014925 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | B.1.258.14 | 0.004902 |
ORF1ab/nsp6 | 106 | S106C | tCt | tGt | 5 | 5 | B.1.351.1 | 0.192308 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | B.1.533 | 0.048077 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | C.36.3 | 0.002836 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 5 | 5 | C.39 | 0.09434 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 4 | 5 | P.1.12 | 0.001936 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 1 | 5 | P.1.12 | 0.000484 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 4 | 4 | A | 0.001548 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 4 | 4 | A.23.1 | 0.002817 |
ORF1ab/nsp6 | 106 | S106V | TCT | GTA | 2 | 4 | All | 0 |
ORF1ab/nsp6 | 106 | S106V | TCt | GTt | 2 | 4 | All | 0 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 3 | 4 | AY.20 | 0.000117 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 4 | AY.20 | 0.000039 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp6 | 106 | S106del1 | tCT | tT- | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | B.1.1.142 | 0.070175 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp6 | 106 | S106V | TCt | GTt | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 106 | S106V | TCT | GTA | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | B.1.214.1 | 0.08 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | B.1.367 | 0.00317 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | B.1.618 | 0.016129 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | C.1 | 0.009569 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 4 | 4 | N.5 | 0.007067 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 2 | 4 | P.1.2 | 0.002312 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 2 | 4 | P.1.2 | 0.002312 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | P.5 | 0.054795 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp6 | 106 | S106G | TCt | GGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 2 | 3 | AY.46 | 0.000208 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 1 | 3 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 2 | 3 | AY.59 | 0.001059 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 3 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | AY.60 | 0.002814 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | B.1.1.141 | 0.006036 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | B.1.1.241 | 0.006211 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | B.1.1.389 | 0.018182 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 3 | 3 | B.1.1.526 | 0.010638 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp6 | 106 | S106G | TCt | GGt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 3 | 3 | B.1.177.65 | 0.001996 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | B.1.210 | 0.006397 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp6 | 106 | S106L | TCt | CTt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp6 | 106 | S106S | TCT | AGC | 1 | 3 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 1 | 3 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 106 | S106S | TCt | AGt | 1 | 3 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | B.1.580 | 0.012195 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 3 | 3 | B.1.625 | 0.007059 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 3 | 3 | B.1.625 | 0.007059 |
ORF1ab/nsp6 | 106 | S106X | tCT | tAG | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 2 | 3 | P.1.1 | 0.000635 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 1 | 3 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcC | 1 | 3 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 106 | S106S | TCt | AGt | 1 | 3 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 106 | S106S | TCT | AGC | 1 | 3 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | B.1.1.129 | 0.018349 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.254 | 0.022472 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.299 | 0.02439 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.302 | 0.004149 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.177.31 | 0.022989 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 2 | B.1.234 | 0.000132 |
ORF1ab/nsp6 | 106 | S106del2 | TCT | --N | 1 | 2 | B.1.234 | 0.000132 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.351.1 | 0.076923 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | B.1.503 | 0.004975 |
ORF1ab/nsp6 | 106 | S106C | tCt | tGt | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 106 | S106C | tCT | tGC | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | B.3.1 | 0.003317 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp6 | 106 | S106del1 | Tct | -ct | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp6 | 106 | S106C | tCt | tGt | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 106 | S106C | tCT | tGC | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 106 | S106T | TcT | AcG | 1 | 2 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 1 | 2 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 1 | 1 | 0.055556 | |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp6 | 106 | S106M | TCT | ATG | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 106 | S106I | TCt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 106 | S106W | tCT | tGG | 1 | 1 | All | 0 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 106 | S106L | TCT | CTG | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp6 | 106 | S106C | tCt | tGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 106 | S106del1 | tCt | t-t | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 1 | 1 | B.1.1.168 | 0.026316 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp6 | 106 | S106X | tCT | tGA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp6 | 106 | S106C | tCt | tGt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp6 | 106 | S106del2 | TCT | --N | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp6 | 106 | S106del2 | tCT | t-- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.456 | 0.055556 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp6 | 106 | S106L | tCT | tTG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106I | TCt | ATt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106W | tCT | tGG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106M | TCT | ATG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.72 | 0.030303 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.177.67 | 0.007634 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.314 | 0.007519 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp6 | 106 | S106del2 | tCT | t-- | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp6 | 106 | S106P | Tct | Cct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp6 | 106 | S106A | Tct | Gct | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp6 | 106 | S106del1 | TCT | -NN | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcC | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcA | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | C.1.1 | 0.076923 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 106 | S106del2 | TCT | --N | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 106 | S106X | tCT | tAG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | C.40 | 0.027778 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp6 | 106 | S106F | tCt | tTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp6 | 106 | S106del2 | TCT | --N | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 106 | S106S | tcT | tcG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 106 | S106X | tCT | tAG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 106 | S106Y | tCt | tAt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp6 | 106 | S106L | TCt | CTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp6 | 106 | S106K | TCT | AAG | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp6 | 106 | S106del2 | TCt | --t | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp6 | 106 | S106N | TCt | AAt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp6 | 106 | S106T | Tct | Act | 1 | 1 | Q.6 | 0.006623 |
ORF1ab/nsp6 | 106 | S106del | TCT | --- | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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