CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = T45del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B45T45del1T3308del1delaCCa-A310.33333310187-10189
ORF1ab/nsp5A-B45T45del1T3308del1delacCac-310.33333310187-10189
ORF1ab/nsp5A-B45T45del1T3308del1delAcc-cc310.33333310187-10189

Details of the mutation T45del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B45T45del1aCCa-A13All0
ORF1ab/nsp5A-B45T45del1acCac-13All0
ORF1ab/nsp5A-B45T45del1Acc-cc13All0
ORF1ab/nsp5A-B45T45del1acCac-11AY.670.000464
ORF1ab/nsp5A-B45T45del1Acc-cc11B.1.1770.000013
ORF1ab/nsp5A-B45T45del1aCCa-A11B.1.20.000009