CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = T45T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B45T45TT3308TsynacCacT275722240.80667410187-10189
ORF1ab/nsp5A-B45T45TT3308TsynacCacA27575040.18280710187-10189
ORF1ab/nsp5A-B45T45TT3308TsynacCacG2757290.010518710187-10189

Details of the mutation T45T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B45T45TacCacT22242757All0.000425
ORF1ab/nsp5A-B45T45TacCacA5042757All0.000096
ORF1ab/nsp5A-B45T45TacCacG292757All0.000006
ORF1ab/nsp5A-B45T45TacCacT497619B.1.1.70.000445
ORF1ab/nsp5A-B45T45TacCacA118619B.1.1.70.000106
ORF1ab/nsp5A-B45T45TacCacG4619B.1.1.70.000004
ORF1ab/nsp5A-B45T45TacCacT270276B.1.20.002377
ORF1ab/nsp5A-B45T45TacCacA6276B.1.20.000053
ORF1ab/nsp5A-B45T45TacCacA172245AY.40.000268
ORF1ab/nsp5A-B45T45TacCacT73245AY.40.000114
ORF1ab/nsp5A-B45T45TacCacT241241AY.290.003801
ORF1ab/nsp5A-B45T45TacCacT94101AY.30.000935
ORF1ab/nsp5A-B45T45TacCacA7101AY.30.00007
ORF1ab/nsp5A-B45T45TacCacT9293AY.440.00056
ORF1ab/nsp5A-B45T45TacCacA193AY.440.000006
ORF1ab/nsp5A-B45T45TacCacT7686P.10.001197
ORF1ab/nsp5A-B45T45TacCacA1086P.10.000158
ORF1ab/nsp5A-B45T45TacCacT4361AY.250.000259
ORF1ab/nsp5A-B45T45TacCacA1861AY.250.000108
ORF1ab/nsp5A-B45T45TacCacT5260B.1.617.20.000196
ORF1ab/nsp5A-B45T45TacCacA760B.1.617.20.000026
ORF1ab/nsp5A-B45T45TacCacG160B.1.617.20.000004
ORF1ab/nsp5A-B45T45TacCacT5050B.1.258.110.019818
ORF1ab/nsp5A-B45T45TacCacA4445AY.9.20.001616
ORF1ab/nsp5A-B45T45TacCacT145AY.9.20.000037
ORF1ab/nsp5A-B45T45TacCacT3943AY.430.000173
ORF1ab/nsp5A-B45T45TacCacA343AY.430.000013
ORF1ab/nsp5A-B45T45TacCacG143AY.430.000004
ORF1ab/nsp5A-B45T45TacCacT3640B.10.00033
ORF1ab/nsp5A-B45T45TacCacA240B.10.000018
ORF1ab/nsp5A-B45T45TacCacG240B.10.000018
ORF1ab/nsp5A-B45T45TacCacT3438AY.1030.000211
ORF1ab/nsp5A-B45T45TacCacA438AY.1030.000025
ORF1ab/nsp5A-B45T45TacCacT3638AY.390.00089
ORF1ab/nsp5A-B45T45TacCacA238AY.390.000049
ORF1ab/nsp5A-B45T45TacCacT3737B.1.4290.000871
ORF1ab/nsp5A-B45T45TacCacA3031AY.700.006255
ORF1ab/nsp5A-B45T45TacCacT131AY.700.000209
ORF1ab/nsp5A-B45T45TacCacT2929AY.50.000599
ORF1ab/nsp5A-B45T45TacCacT2025AY.200.000777
ORF1ab/nsp5A-B45T45TacCacA525AY.200.000194
ORF1ab/nsp5A-B45T45TacCacT2525B.1.2400.005389
ORF1ab/nsp5A-B45T45TacCacA1821AY.470.00056
ORF1ab/nsp5A-B45T45TacCacT321AY.470.000093
ORF1ab/nsp5A-B45T45TacCacT1119B.1.10.0002
ORF1ab/nsp5A-B45T45TacCacA419B.1.10.000073
ORF1ab/nsp5A-B45T45TacCacG419B.1.10.000073
ORF1ab/nsp5A-B45T45TacCacT1818B.1.4700.025281
ORF1ab/nsp5A-B45T45TacCacT1515AY.1020.000398
ORF1ab/nsp5A-B45T45TacCacT1214B.1.3510.000357
ORF1ab/nsp5A-B45T45TacCacA214B.1.3510.000059
ORF1ab/nsp5A-B45T45TacCacT1313AY.4.50.001397
ORF1ab/nsp5A-B45T45TacCacT1313B.1.1.2650.041009
ORF1ab/nsp5A-B45T45TacCacT1113B.1.1770.000145
ORF1ab/nsp5A-B45T45TacCacA213B.1.1770.000026
ORF1ab/nsp5A-B45T45TacCacT1212B.1.177.210.000918
ORF1ab/nsp5A-B45T45TacCacT1212Q.30.00174
ORF1ab/nsp5A-B45T45TacCacG1011AY.4.20.000217
ORF1ab/nsp5A-B45T45TacCacA111AY.4.20.000022
ORF1ab/nsp5A-B45T45TacCacT1111B.1.617.10.001419
ORF1ab/nsp5A-B45T45TacCacA1010AY.540.000953
ORF1ab/nsp5A-B45T45TacCacT1010B.1.1.2910.007424
ORF1ab/nsp5A-B45T45TacCacA710B.1.2210.000497
ORF1ab/nsp5A-B45T45TacCacT310B.1.2210.000213
ORF1ab/nsp5A-B45T45TacCacT1010B.1.438.10.001073
ORF1ab/nsp5A-B45T45TacCacA810B.1.5250.000905
ORF1ab/nsp5A-B45T45TacCacT210B.1.5250.000226
ORF1ab/nsp5A-B45T45TacCacT1010P.1.140.000478
ORF1ab/nsp5A-B45T45TacCacT99B.1.360.001313
ORF1ab/nsp5A-B45T45TacCacT88AY.260.000226
ORF1ab/nsp5A-B45T45TacCacT78B.1.1.5190.000278
ORF1ab/nsp5A-B45T45TacCacA18B.1.1.5190.00004
ORF1ab/nsp5A-B45T45TacCacT78B.1.1600.000218
ORF1ab/nsp5A-B45T45TacCacA18B.1.1600.000031
ORF1ab/nsp5A-B45T45TacCacA48B.1.177.860.000734
ORF1ab/nsp5A-B45T45TacCacT48B.1.177.860.000734
ORF1ab/nsp5A-B45T45TacCacT78B.1.2430.000487
ORF1ab/nsp5A-B45T45TacCacA18B.1.2430.00007
ORF1ab/nsp5A-B45T45TacCacT88B.1.466.20.00313
ORF1ab/nsp5A-B45T45TacCacT78B.1.5960.00061
ORF1ab/nsp5A-B45T45TacCacA18B.1.5960.000087
ORF1ab/nsp5A-B45T45TacCacT77B.1.1.2840.000752
ORF1ab/nsp5A-B45T45TacCacT77B.1.177.770.005084
ORF1ab/nsp5A-B45T45TacCacT77B.1.2580.000466
ORF1ab/nsp5A-B45T45TacCacT77B.1.258.170.000728
ORF1ab/nsp5A-B45T45TacCacT66B.1.36.10.006842
ORF1ab/nsp5A-B45T45TacCacT66B.1.4090.004687
ORF1ab/nsp5A-B45T45TacCacT66C.370.000696
ORF1ab/nsp5A-B45T45TacCacT55AY.1130.000712
ORF1ab/nsp5A-B45T45TacCacT55AY.39.10.000198
ORF1ab/nsp5A-B45T45TacCacT55B.1.1.280.001556
ORF1ab/nsp5A-B45T45TacCacT55B.1.1.3110.001791
ORF1ab/nsp5A-B45T45TacCacT55B.1.1.3690.002231
ORF1ab/nsp5A-B45T45TacCacT55B.1.4000.002145
ORF1ab/nsp5A-B45T45TacCacT55Q.10.000632
ORF1ab/nsp5A-B45T45TacCacT44AY.1190.000141
ORF1ab/nsp5A-B45T45TacCacT44AY.29.10.000882
ORF1ab/nsp5A-B45T45TacCacT44AY.46.60.000289
ORF1ab/nsp5A-B45T45TacCacT44AY.730.002661
ORF1ab/nsp5A-B45T45TacCacT44AY.890.019608
ORF1ab/nsp5A-B45T45TacCacT44B.1.1.3260.007042
ORF1ab/nsp5A-B45T45TacCacT44B.1.1.4670.076923
ORF1ab/nsp5A-B45T45TacCacT44B.1.160.300.011905
ORF1ab/nsp5A-B45T45TacCacT44B.1.177.750.004162
ORF1ab/nsp5A-B45T45TacCacT33A0.001161
ORF1ab/nsp5A-B45T45TacCacT23AY.1000.000092
ORF1ab/nsp5A-B45T45TacCacA13AY.1000.000046
ORF1ab/nsp5A-B45T45TacCacG23AY.140.000176
ORF1ab/nsp5A-B45T45TacCacT13AY.140.000088
ORF1ab/nsp5A-B45T45TacCacT33AY.230.000209
ORF1ab/nsp5A-B45T45TacCacT33AY.60.000123
ORF1ab/nsp5A-B45T45TacCacT33AY.740.000347
ORF1ab/nsp5A-B45T45TacCacT33AY.75.10.000541
ORF1ab/nsp5A-B45T45TacCacT23AY.910.001461
ORF1ab/nsp5A-B45T45TacCacA13AY.910.00073
ORF1ab/nsp5A-B45T45TacCacT23B0.000256
ORF1ab/nsp5A-B45T45TacCacG13B0.000128
ORF1ab/nsp5A-B45T45TacCacT33B.1.1.3220.026316
ORF1ab/nsp5A-B45T45TacCacT33B.1.1.700.001023
ORF1ab/nsp5A-B45T45TacCacT23B.1.4270.000101
ORF1ab/nsp5A-B45T45TacCacG13B.1.4270.00005
ORF1ab/nsp5A-B45T45TacCacT33B.1.5260.000071
ORF1ab/nsp5A-B45T45TacCacT33B.1.5950.000783
ORF1ab/nsp5A-B45T45TacCacT33P.1.120.001452
ORF1ab/nsp5A-B45T45TacCacT23P.20.000373
ORF1ab/nsp5A-B45T45TacCacA13P.20.000187
ORF1ab/nsp5A-B45T45TacCacT22AY.1170.000169
ORF1ab/nsp5A-B45T45TacCacT22AY.1180.000125
ORF1ab/nsp5A-B45T45TacCacT12AY.1210.000135
ORF1ab/nsp5A-B45T45TacCacA12AY.1210.000135
ORF1ab/nsp5A-B45T45TacCacT22AY.20.000712
ORF1ab/nsp5A-B45T45TacCacT22AY.3.10.000171
ORF1ab/nsp5A-B45T45TacCacA22AY.34.10.00102
ORF1ab/nsp5A-B45T45TacCacT22AY.5.40.000553
ORF1ab/nsp5A-B45T45TacCacT22AY.570.001312
ORF1ab/nsp5A-B45T45TacCacT22AY.840.000875
ORF1ab/nsp5A-B45T45TacCacT22AY.9.10.000167
ORF1ab/nsp5A-B45T45TacCacT22B.1.1.2890.004167
ORF1ab/nsp5A-B45T45TacCacG22B.1.1.4090.005666
ORF1ab/nsp5A-B45T45TacCacT22B.1.177.440.001038
ORF1ab/nsp5A-B45T45TacCacT22B.1.214.20.001199
ORF1ab/nsp5A-B45T45TacCacT22B.1.2390.002442
ORF1ab/nsp5A-B45T45TacCacT22B.1.36.180.00084
ORF1ab/nsp5A-B45T45TacCacT22B.1.36.360.001204
ORF1ab/nsp5A-B45T45TacCacT22B.1.36.80.002
ORF1ab/nsp5A-B45T45TacCacT22B.1.5750.000607
ORF1ab/nsp5A-B45T45TacCacT22B.1.5880.00182
ORF1ab/nsp5A-B45T45TacCacT22B.40.004415
ORF1ab/nsp5A-B45T45TacCacT22N.40.008511
ORF1ab/nsp5A-B45T45TacCacT22P.1.150.000465
ORF1ab/nsp5A-B45T45TacCacA110.055556
ORF1ab/nsp5A-B45T45TacCacA11A.2.20.001689
ORF1ab/nsp5A-B45T45TacCacT11A.2.50.000499
ORF1ab/nsp5A-B45T45TacCacT11AY.100.00053
ORF1ab/nsp5A-B45T45TacCacT11AY.1010.00049
ORF1ab/nsp5A-B45T45TacCacT11AY.1090.00074
ORF1ab/nsp5A-B45T45TacCacA11AY.1100.000113
ORF1ab/nsp5A-B45T45TacCacT11AY.1140.000231
ORF1ab/nsp5A-B45T45TacCacT11AY.280.00189
ORF1ab/nsp5A-B45T45TacCacT11AY.340.000097
ORF1ab/nsp5A-B45T45TacCacT11AY.350.000233
ORF1ab/nsp5A-B45T45TacCacT11AY.360.000148
ORF1ab/nsp5A-B45T45TacCacT11AY.370.000316
ORF1ab/nsp5A-B45T45TacCacT11AY.420.00004
ORF1ab/nsp5A-B45T45TacCacT11AY.450.000122
ORF1ab/nsp5A-B45T45TacCacT11AY.460.000104
ORF1ab/nsp5A-B45T45TacCacT11AY.46.10.001027
ORF1ab/nsp5A-B45T45TacCacA11AY.46.20.000635
ORF1ab/nsp5A-B45T45TacCacT11AY.5.30.000337
ORF1ab/nsp5A-B45T45TacCacT11AY.590.00053
ORF1ab/nsp5A-B45T45TacCacT11AY.610.000105
ORF1ab/nsp5A-B45T45TacCacA11AY.620.000436
ORF1ab/nsp5A-B45T45TacCacT11AY.70.000196
ORF1ab/nsp5A-B45T45TacCacT11AY.750.000056
ORF1ab/nsp5A-B45T45TacCacT11AY.790.001211
ORF1ab/nsp5A-B45T45TacCacT11AY.80.000606
ORF1ab/nsp5A-B45T45TacCacA11AY.810.001992
ORF1ab/nsp5A-B45T45TacCacT11AY.880.000884
ORF1ab/nsp5A-B45T45TacCacT11AY.90.000068
ORF1ab/nsp5A-B45T45TacCacT11AY.980.000079
ORF1ab/nsp5A-B45T45TacCacT11AY.99.20.000092
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.1570.000913
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.1760.000439
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.1980.001468
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.2220.000204
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.3060.000438
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.3180.000302
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.330.000421
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.3880.045455
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.390.00051
ORF1ab/nsp5A-B45T45TacCacA11B.1.1.3980.003226
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.4290.004608
ORF1ab/nsp5A-B45T45TacCacT11B.1.1.4660.008696
ORF1ab/nsp5A-B45T45TacCacT11B.1.177.170.000821
ORF1ab/nsp5A-B45T45TacCacA11B.1.177.40.000211
ORF1ab/nsp5A-B45T45TacCacT11B.1.2060.000816
ORF1ab/nsp5A-B45T45TacCacT11B.1.2320.000537
ORF1ab/nsp5A-B45T45TacCacT11B.1.2350.002519
ORF1ab/nsp5A-B45T45TacCacT11B.1.3380.008621
ORF1ab/nsp5A-B45T45TacCacT11B.1.36.160.001425
ORF1ab/nsp5A-B45T45TacCacT11B.1.36.170.000494
ORF1ab/nsp5A-B45T45TacCacT11B.1.36.290.000517
ORF1ab/nsp5A-B45T45TacCacT11B.1.3670.000792
ORF1ab/nsp5A-B45T45TacCacT11B.1.4990.00105
ORF1ab/nsp5A-B45T45TacCacT11B.1.5440.006024
ORF1ab/nsp5A-B45T45TacCacT11B.1.5680.001111
ORF1ab/nsp5A-B45T45TacCacG11B.1.5770.000687
ORF1ab/nsp5A-B45T45TacCacT11B.1.6200.000946
ORF1ab/nsp5A-B45T45TacCacT11B.1.6210.000089
ORF1ab/nsp5A-B45T45TacCacT11B.1.6230.000536
ORF1ab/nsp5A-B45T45TacCacT11B.1.6290.013333
ORF1ab/nsp5A-B45T45TacCacT11B.1.6340.003425
ORF1ab/nsp5A-B45T45TacCacT11B.1.6370.000073
ORF1ab/nsp5A-B45T45TacCacA11C.160.00106
ORF1ab/nsp5A-B45T45TacCacT11D.20.000075
ORF1ab/nsp5A-B45T45TacCacT11Q.80.000165