CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 45 | T45T | T3308T | syn | acC | acT | 2757 | 2224 | 0.806674 | 10187-10189 |
ORF1ab/nsp5A-B | 45 | T45T | T3308T | syn | acC | acA | 2757 | 504 | 0.182807 | 10187-10189 |
ORF1ab/nsp5A-B | 45 | T45T | T3308T | syn | acC | acG | 2757 | 29 | 0.0105187 | 10187-10189 |
Details of the mutation T45T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2224 | 2757 | All | 0.000425 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 504 | 2757 | All | 0.000096 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 29 | 2757 | All | 0.000006 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 497 | 619 | B.1.1.7 | 0.000445 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 118 | 619 | B.1.1.7 | 0.000106 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 4 | 619 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 270 | 276 | B.1.2 | 0.002377 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 6 | 276 | B.1.2 | 0.000053 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 172 | 245 | AY.4 | 0.000268 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 73 | 245 | AY.4 | 0.000114 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 241 | 241 | AY.29 | 0.003801 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 94 | 101 | AY.3 | 0.000935 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 7 | 101 | AY.3 | 0.00007 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 92 | 93 | AY.44 | 0.00056 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 93 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 76 | 86 | P.1 | 0.001197 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 10 | 86 | P.1 | 0.000158 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 43 | 61 | AY.25 | 0.000259 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 18 | 61 | AY.25 | 0.000108 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 52 | 60 | B.1.617.2 | 0.000196 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 7 | 60 | B.1.617.2 | 0.000026 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 1 | 60 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 50 | 50 | B.1.258.11 | 0.019818 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 44 | 45 | AY.9.2 | 0.001616 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 45 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 39 | 43 | AY.43 | 0.000173 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 3 | 43 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 1 | 43 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 36 | 40 | B.1 | 0.00033 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 2 | 40 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 2 | 40 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 34 | 38 | AY.103 | 0.000211 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 4 | 38 | AY.103 | 0.000025 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 36 | 38 | AY.39 | 0.00089 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 2 | 38 | AY.39 | 0.000049 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 37 | 37 | B.1.429 | 0.000871 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 30 | 31 | AY.70 | 0.006255 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 31 | AY.70 | 0.000209 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 29 | 29 | AY.5 | 0.000599 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 20 | 25 | AY.20 | 0.000777 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 5 | 25 | AY.20 | 0.000194 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 25 | 25 | B.1.240 | 0.005389 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 18 | 21 | AY.47 | 0.00056 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 21 | AY.47 | 0.000093 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 11 | 19 | B.1.1 | 0.0002 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 4 | 19 | B.1.1 | 0.000073 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 4 | 19 | B.1.1 | 0.000073 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 18 | 18 | B.1.470 | 0.025281 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 12 | 14 | B.1.351 | 0.000357 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 2 | 14 | B.1.351 | 0.000059 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 13 | 13 | AY.4.5 | 0.001397 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 13 | 13 | B.1.1.265 | 0.041009 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 11 | 13 | B.1.177 | 0.000145 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 2 | 13 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 12 | 12 | B.1.177.21 | 0.000918 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 12 | 12 | Q.3 | 0.00174 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 10 | 11 | AY.4.2 | 0.000217 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 11 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 11 | 11 | B.1.617.1 | 0.001419 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 10 | 10 | AY.54 | 0.000953 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 10 | 10 | B.1.1.291 | 0.007424 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 7 | 10 | B.1.221 | 0.000497 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 10 | B.1.221 | 0.000213 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 10 | 10 | B.1.438.1 | 0.001073 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 8 | 10 | B.1.525 | 0.000905 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 10 | B.1.525 | 0.000226 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 7 | 8 | B.1.1.519 | 0.000278 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 8 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 7 | 8 | B.1.160 | 0.000218 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 8 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 4 | 8 | B.1.177.86 | 0.000734 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 4 | 8 | B.1.177.86 | 0.000734 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 7 | 8 | B.1.243 | 0.000487 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 8 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 8 | 8 | B.1.466.2 | 0.00313 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 7 | 8 | B.1.596 | 0.00061 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 8 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 7 | 7 | B.1.1.284 | 0.000752 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 7 | 7 | B.1.177.77 | 0.005084 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 6 | 6 | B.1.36.1 | 0.006842 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 6 | 6 | B.1.409 | 0.004687 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 5 | 5 | B.1.1.311 | 0.001791 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 5 | 5 | B.1.1.369 | 0.002231 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 5 | 5 | B.1.400 | 0.002145 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 4 | 4 | AY.73 | 0.002661 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 4 | 4 | AY.89 | 0.019608 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 4 | 4 | B.1.1.326 | 0.007042 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 4 | 4 | B.1.1.467 | 0.076923 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 4 | 4 | B.1.160.30 | 0.011905 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 4 | 4 | B.1.177.75 | 0.004162 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 3 | A | 0.001161 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 3 | AY.100 | 0.000092 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 3 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 2 | 3 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 3 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 3 | AY.91 | 0.001461 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 3 | AY.91 | 0.00073 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 3 | B | 0.000256 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 1 | 3 | B | 0.000128 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 3 | B.1.1.322 | 0.026316 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 3 | B.1.427 | 0.000101 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 1 | 3 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 3 | P.2 | 0.000373 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 3 | P.2 | 0.000187 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 2 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 2 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | B.1.1.289 | 0.004167 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.388 | 0.045455 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acG | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acA | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 45 | T45T | acC | acT | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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