CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = T45S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B45T45ST3308SnonsynaCcaGc1150.45454510187-10189
ORF1ab/nsp5A-B45T45ST3308SnonsynAccTcc1140.36363610187-10189
ORF1ab/nsp5A-B45T45ST3308SnonsynAcCTcA1120.18181810187-10189

Details of the mutation T45S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B45T45SaCcaGc511All0.000001
ORF1ab/nsp5A-B45T45SAccTcc411All0.000001
ORF1ab/nsp5A-B45T45SAcCTcA211All0
ORF1ab/nsp5A-B45T45SAcCTcA220.111111
ORF1ab/nsp5A-B45T45SaCcaGc22B.1.1.3180.000604
ORF1ab/nsp5A-B45T45SaCcaGc22B.1.1.70.000002
ORF1ab/nsp5A-B45T45SAccTcc11AY.1190.000035
ORF1ab/nsp5A-B45T45SAccTcc11AY.99.10.001553
ORF1ab/nsp5A-B45T45SAccTcc11B.1.466.20.000391
ORF1ab/nsp5A-B45T45SAccTcc11B.1.5820.000491
ORF1ab/nsp5A-B45T45SaCcaGc11D.20.000075