CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = T196M

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B196T196MT3459MnonsynaCgaTg68256825110640-10642

Details of the mutation T196M within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B196T196MaCgaTg68256825All0.001305
ORF1ab/nsp5A-B196T196MaCgaTg34233423B.1.4290.080539
ORF1ab/nsp5A-B196T196MaCgaTg10011001AY.440.006093
ORF1ab/nsp5A-B196T196MaCgaTg868868B.1.2340.114527
ORF1ab/nsp5A-B196T196MaCgaTg280280B.1.2580.018633
ORF1ab/nsp5A-B196T196MaCgaTg126126B.1.36.330.954545
ORF1ab/nsp5A-B196T196MaCgaTg113113B.10.001035
ORF1ab/nsp5A-B196T196MaCgaTg107107B.1.1.70.000096
ORF1ab/nsp5A-B196T196MaCgaTg9393AY.40.000145
ORF1ab/nsp5A-B196T196MaCgaTg7777B.1.20.000678
ORF1ab/nsp5A-B196T196MaCgaTg7070B.1.177.140.426829
ORF1ab/nsp5A-B196T196MaCgaTg6969B.1.6370.005042
ORF1ab/nsp5A-B196T196MaCgaTg6363AY.430.000279
ORF1ab/nsp5A-B196T196MaCgaTg5959B.1.4270.002979
ORF1ab/nsp5A-B196T196MaCgaTg5353B.1.617.20.0002
ORF1ab/nsp5A-B196T196MaCgaTg2828AY.1210.003789
ORF1ab/nsp5A-B196T196MaCgaTg2323AY.1000.001058
ORF1ab/nsp5A-B196T196MaCgaTg2222B.1.1.1530.024096
ORF1ab/nsp5A-B196T196MaCgaTg1919B.1.360.002772
ORF1ab/nsp5A-B196T196MaCgaTg1818B.1.1.4640.02651
ORF1ab/nsp5A-B196T196MaCgaTg1616AY.3.10.001364
ORF1ab/nsp5A-B196T196MaCgaTg1414AY.250.000084
ORF1ab/nsp5A-B196T196MaCgaTg1313B.1.10.000236
ORF1ab/nsp5A-B196T196MaCgaTg1313B.1.3970.063107
ORF1ab/nsp5A-B196T196MaCgaTg1212AY.1030.000075
ORF1ab/nsp5A-B196T196MaCgaTg1111AY.30.000109
ORF1ab/nsp5A-B196T196MaCgaTg1010AY.60.000411
ORF1ab/nsp5A-B196T196MaCgaTg1010B.1.1.2140.000555
ORF1ab/nsp5A-B196T196MaCgaTg1010B.1.1.5260.035461
ORF1ab/nsp5A-B196T196MaCgaTg99B.1.3110.002471
ORF1ab/nsp5A-B196T196MaCgaTg88B.1.2400.001725
ORF1ab/nsp5A-B196T196MaCgaTg77B.1.5960.00061
ORF1ab/nsp5A-B196T196MaCgaTg66B.1.1770.000079
ORF1ab/nsp5A-B196T196MaCgaTg55AY.1020.000133
ORF1ab/nsp5A-B196T196MaCgaTg55AY.1180.000313
ORF1ab/nsp5A-B196T196MaCgaTg55AY.270.000324
ORF1ab/nsp5A-B196T196MaCgaTg55AY.290.000079
ORF1ab/nsp5A-B196T196MaCgaTg55B0.000639
ORF1ab/nsp5A-B196T196MaCgaTg55B.1.1.3060.002192
ORF1ab/nsp5A-B196T196MaCgaTg55B.1.1.5190.000199
ORF1ab/nsp5A-B196T196MaCgaTg55B.1.2430.000348
ORF1ab/nsp5A-B196T196MaCgaTg44AY.450.000487
ORF1ab/nsp5A-B196T196MaCgaTg44B.1.1.3180.001207
ORF1ab/nsp5A-B196T196MaCgaTg44B.1.1600.000125
ORF1ab/nsp5A-B196T196MaCgaTg44B.1.177.330.006579
ORF1ab/nsp5A-B196T196MaCgaTg44B.1.5260.000094
ORF1ab/nsp5A-B196T196MaCgaTg44R.10.00036
ORF1ab/nsp5A-B196T196MaCgaTg33AY.4.20.000065
ORF1ab/nsp5A-B196T196MaCgaTg33AY.46.40.000494
ORF1ab/nsp5A-B196T196MaCgaTg33AY.46.60.000217
ORF1ab/nsp5A-B196T196MaCgaTg33AY.50.000062
ORF1ab/nsp5A-B196T196MaCgaTg33B.1.4090.002344
ORF1ab/nsp5A-B196T196MaCgaTg33D.20.000225
ORF1ab/nsp5A-B196T196MaCgaTg22AE.80.000978
ORF1ab/nsp5A-B196T196MaCgaTg22AY.330.000134
ORF1ab/nsp5A-B196T196MaCgaTg22AY.690.000373
ORF1ab/nsp5A-B196T196MaCgaTg22AY.70.000392
ORF1ab/nsp5A-B196T196MaCgaTg22AY.99.20.000184
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.1.2200.003717
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.1.2940.002532
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.1.3470.036364
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.1.4860.003155
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.1.520.02439
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.177.160.001329
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.2210.000142
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.3490.00143
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.36.80.002
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.3960.001411
ORF1ab/nsp5A-B196T196MaCgaTg22B.1.5820.000981
ORF1ab/nsp5A-B196T196MaCgaTg11A.10.000282
ORF1ab/nsp5A-B196T196MaCgaTg11A.20.000662
ORF1ab/nsp5A-B196T196MaCgaTg11A.50.001923
ORF1ab/nsp5A-B196T196MaCgaTg11AE.20.058824
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1050.000643
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1070.000466
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1100.000113
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1140.000231
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1160.000287
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1170.000085
ORF1ab/nsp5A-B196T196MaCgaTg11AY.1190.000035
ORF1ab/nsp5A-B196T196MaCgaTg11AY.130.000161
ORF1ab/nsp5A-B196T196MaCgaTg11AY.20.000356
ORF1ab/nsp5A-B196T196MaCgaTg11AY.230.00007
ORF1ab/nsp5A-B196T196MaCgaTg11AY.260.000028
ORF1ab/nsp5A-B196T196MaCgaTg11AY.390.000025
ORF1ab/nsp5A-B196T196MaCgaTg11AY.4.2.10.000149
ORF1ab/nsp5A-B196T196MaCgaTg11AY.460.000104
ORF1ab/nsp5A-B196T196MaCgaTg11AY.5.30.000337
ORF1ab/nsp5A-B196T196MaCgaTg11AY.570.000656
ORF1ab/nsp5A-B196T196MaCgaTg11AY.610.000105
ORF1ab/nsp5A-B196T196MaCgaTg11AY.75.10.00018
ORF1ab/nsp5A-B196T196MaCgaTg11AY.850.000427
ORF1ab/nsp5A-B196T196MaCgaTg11AY.980.000079
ORF1ab/nsp5A-B196T196MaCgaTg11AY.99.10.001553
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.1410.002012
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.1590.004673
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.2160.00089
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.250.000569
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.310.066667
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.3170.000412
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.3260.001761
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.3510.002793
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1.700.000341
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.1110.001175
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.130.002375
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.177.40.000211
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.177.440.000519
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.2060.000816
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.3240.001605
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.3400.004292
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.3540.043478
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.36.10.00114
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.36.170.000494
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.3690.000285
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.4240.008065
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.429.10.012048
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.438.10.000107
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.466.20.000391
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.5680.001111
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.5760.000907
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.5800.004065
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.5950.000261
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.6210.000089
ORF1ab/nsp5A-B196T196MaCgaTg11B.1.6280.000352
ORF1ab/nsp5A-B196T196MaCgaTg11B.4.50.011905
ORF1ab/nsp5A-B196T196MaCgaTg11C.370.000116
ORF1ab/nsp5A-B196T196MaCgaTg11P.10.000016
ORF1ab/nsp5A-B196T196MaCgaTg11P.1.70.000319
ORF1ab/nsp5A-B196T196MaCgaTg11P.20.000187