CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 196 | T196M | T3459M | nonsyn | aCg | aTg | 6825 | 6825 | 1 | 10640-10642 |
Details of the mutation T196M within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 6825 | 6825 | All | 0.001305 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 3423 | 3423 | B.1.429 | 0.080539 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1001 | 1001 | AY.44 | 0.006093 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 868 | 868 | B.1.234 | 0.114527 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 280 | 280 | B.1.258 | 0.018633 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 126 | 126 | B.1.36.33 | 0.954545 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 113 | 113 | B.1 | 0.001035 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 107 | 107 | B.1.1.7 | 0.000096 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 93 | 93 | AY.4 | 0.000145 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 77 | 77 | B.1.2 | 0.000678 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 70 | 70 | B.1.177.14 | 0.426829 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 69 | 69 | B.1.637 | 0.005042 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 63 | 63 | AY.43 | 0.000279 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 59 | 59 | B.1.427 | 0.002979 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 53 | 53 | B.1.617.2 | 0.0002 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 28 | 28 | AY.121 | 0.003789 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 23 | 23 | AY.100 | 0.001058 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 22 | 22 | B.1.1.153 | 0.024096 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 19 | 19 | B.1.36 | 0.002772 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 18 | 18 | B.1.1.464 | 0.02651 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 16 | 16 | AY.3.1 | 0.001364 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 13 | 13 | B.1.397 | 0.063107 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 10 | 10 | B.1.1.526 | 0.035461 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 9 | 9 | B.1.311 | 0.002471 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 5 | 5 | B | 0.000639 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 4 | 4 | B.1.177.33 | 0.006579 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.1.347 | 0.036364 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.1.486 | 0.003155 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.1.52 | 0.02439 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AE.2 | 0.058824 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.1.31 | 0.066667 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.354 | 0.043478 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.429.1 | 0.012048 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp5A-B | 196 | T196M | aCg | aTg | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|