CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = R217S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B217R217SR3480SnonsynagGagT7347220.98365110703-10705
ORF1ab/nsp5A-B217R217SR3480SnonsynagGagC734120.016348810703-10705

Details of the mutation R217S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B217R217SagGagT722734All0.000138
ORF1ab/nsp5A-B217R217SagGagC12734All0.000002
ORF1ab/nsp5A-B217R217SagGagT207207B.1.88.10.995192
ORF1ab/nsp5A-B217R217SagGagT146147AY.1030.000907
ORF1ab/nsp5A-B217R217SagGagC1147AY.1030.000006
ORF1ab/nsp5A-B217R217SagGagT127130B.1.1.70.000114
ORF1ab/nsp5A-B217R217SagGagC3130B.1.1.70.000003
ORF1ab/nsp5A-B217R217SagGagT5454B.1.1.5190.002144
ORF1ab/nsp5A-B217R217SagGagT3333B.1.617.20.000124
ORF1ab/nsp5A-B217R217SagGagT2728AY.40.000042
ORF1ab/nsp5A-B217R217SagGagC128AY.40.000002
ORF1ab/nsp5A-B217R217SagGagT2222AY.250.000132
ORF1ab/nsp5A-B217R217SagGagT1415B.1.10.000254
ORF1ab/nsp5A-B217R217SagGagC115B.1.10.000018
ORF1ab/nsp5A-B217R217SagGagT66AY.1020.000159
ORF1ab/nsp5A-B217R217SagGagT55AY.30.00005
ORF1ab/nsp5A-B217R217SagGagT55AY.440.00003
ORF1ab/nsp5A-B217R217SagGagT55B.10.000046
ORF1ab/nsp5A-B217R217SagGagT55B.1.1.4330.007123
ORF1ab/nsp5A-B217R217SagGagC55B.1.5250.000566
ORF1ab/nsp5A-B217R217SagGagT44AY.1200.000149
ORF1ab/nsp5A-B217R217SagGagT44AY.430.000018
ORF1ab/nsp5A-B217R217SagGagT33B.1.20.000026
ORF1ab/nsp5A-B217R217SagGagT33B.1.4290.000071
ORF1ab/nsp5A-B217R217SagGagT33P.10.000047
ORF1ab/nsp5A-B217R217SagGagT22AY.50.000041
ORF1ab/nsp5A-B217R217SagGagT22AY.510.001818
ORF1ab/nsp5A-B217R217SagGagT22B.1.1.3170.000823
ORF1ab/nsp5A-B217R217SagGagT22B.1.1.3260.003521
ORF1ab/nsp5A-B217R217SagGagT12B.1.1770.000013
ORF1ab/nsp5A-B217R217SagGagC12B.1.1770.000013
ORF1ab/nsp5A-B217R217SagGagT22D.20.00015
ORF1ab/nsp5A-B217R217SagGagT11A.2.20.001689
ORF1ab/nsp5A-B217R217SagGagT11AY.1050.000643
ORF1ab/nsp5A-B217R217SagGagT11AY.1180.000063
ORF1ab/nsp5A-B217R217SagGagT11AY.160.00038
ORF1ab/nsp5A-B217R217SagGagT11AY.390.000025
ORF1ab/nsp5A-B217R217SagGagT11AY.39.10.00004
ORF1ab/nsp5A-B217R217SagGagT11AY.4.20.000022
ORF1ab/nsp5A-B217R217SagGagT11AY.450.000122
ORF1ab/nsp5A-B217R217SagGagT11AY.46.60.000072
ORF1ab/nsp5A-B217R217SagGagT11AY.470.000031
ORF1ab/nsp5A-B217R217SagGagT11AY.70.000196
ORF1ab/nsp5A-B217R217SagGagT11AY.750.000056
ORF1ab/nsp5A-B217R217SagGagT11AY.9.10.000084
ORF1ab/nsp5A-B217R217SagGagT11AY.9.20.000037
ORF1ab/nsp5A-B217R217SagGagT11AY.950.000761
ORF1ab/nsp5A-B217R217SagGagT11B0.000128
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.1640.005155
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.1960.005714
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.2140.000055
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.330.000421
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.4340.000349
ORF1ab/nsp5A-B217R217SagGagT11B.1.1.700.000341
ORF1ab/nsp5A-B217R217SagGagT11B.1.1600.000031
ORF1ab/nsp5A-B217R217SagGagT11B.1.177.600.000218
ORF1ab/nsp5A-B217R217SagGagT11B.1.2430.00007
ORF1ab/nsp5A-B217R217SagGagT11B.1.258.170.000104
ORF1ab/nsp5A-B217R217SagGagT11B.1.3240.001605
ORF1ab/nsp5A-B217R217SagGagT11B.1.360.000146
ORF1ab/nsp5A-B217R217SagGagT11B.1.36.80.001
ORF1ab/nsp5A-B217R217SagGagT11B.1.438.10.000107
ORF1ab/nsp5A-B217R217SagGagT11B.1.4560.003268
ORF1ab/nsp5A-B217R217SagGagT11B.1.5170.000427
ORF1ab/nsp5A-B217R217SagGagT11B.1.5580.004566
ORF1ab/nsp5A-B217R217SagGagT11B.1.5960.000087
ORF1ab/nsp5A-B217R217SagGagT11B.1.6190.000871
ORF1ab/nsp5A-B217R217SagGagT11P.1.140.000048
ORF1ab/nsp5A-B217R217SagGagT11Q.10.000126
ORF1ab/nsp5A-B217R217SagGagT11Q.20.000613