CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = P96S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B96P96SP3359SnonsynCctTct410141000.99975610340-10342
ORF1ab/nsp5A-B96P96SP3359SnonsynCcTTcC410110.00024384310340-10342

Details of the mutation P96S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B96P96SCctTct41004101All0.000784
ORF1ab/nsp5A-B96P96SCcTTcC14101All0
ORF1ab/nsp5A-B96P96SCctTct19561956B.1.6370.14293
ORF1ab/nsp5A-B96P96SCctTct386386B.1.1.70.000346
ORF1ab/nsp5A-B96P96SCctTct263263B.1.617.20.00099
ORF1ab/nsp5A-B96P96SCctTct204204AY.40.000318
ORF1ab/nsp5A-B96P96SCctTct155155B.1.1.3890.939394
ORF1ab/nsp5A-B96P96SCctTct112112AY.1020.00297
ORF1ab/nsp5A-B96P96SCctTct9595B.10.00087
ORF1ab/nsp5A-B96P96SCctTct8787AY.1030.00054
ORF1ab/nsp5A-B96P96SCctTct8484AY.1190.002966
ORF1ab/nsp5A-B96P96SCctTct7575AY.470.002333
ORF1ab/nsp5A-B96P96SCctTct4545B.1.5170.019214
ORF1ab/nsp5A-B96P96SCctTct3636AY.440.000219
ORF1ab/nsp5A-B96P96SCctTct3333AY.1110.006044
ORF1ab/nsp5A-B96P96SCctTct2929B.1.20.000255
ORF1ab/nsp5A-B96P96SCctTct2929B.1.617.10.00374
ORF1ab/nsp5A-B96P96SCctTct2828AY.1170.002366
ORF1ab/nsp5A-B96P96SCctTct2424B.1.10.000435
ORF1ab/nsp5A-B96P96SCctTct2323AY.250.000138
ORF1ab/nsp5A-B96P96SCctTct2323B.1.1600.000717
ORF1ab/nsp5A-B96P96SCctTct2222AY.430.000097
ORF1ab/nsp5A-B96P96SCctTct2121AY.30.000209
ORF1ab/nsp5A-B96P96SCctTct1717AY.46.60.001228
ORF1ab/nsp5A-B96P96SCctTct1515R.10.00135
ORF1ab/nsp5A-B96P96SCctTct1414B.1.4290.000329
ORF1ab/nsp5A-B96P96SCctTct1313B.1.5260.000306
ORF1ab/nsp5A-B96P96SCctTct1010AY.1180.000626
ORF1ab/nsp5A-B96P96SCctTct1010B.1.3990.019342
ORF1ab/nsp5A-B96P96SCctTct99C.370.001045
ORF1ab/nsp5A-B96P96SCctTct99P.10.000142
ORF1ab/nsp5A-B96P96SCctTct88B.1.1770.000105
ORF1ab/nsp5A-B96P96SCctTct77AY.390.000173
ORF1ab/nsp5A-B96P96SCctTct77B.1.1950.035176
ORF1ab/nsp5A-B96P96SCctTct66AY.460.000624
ORF1ab/nsp5A-B96P96SCctTct66AY.98.10.000291
ORF1ab/nsp5A-B96P96SCctTct66B.1.177.860.001101
ORF1ab/nsp5A-B96P96SCctTct66B.1.3510.000178
ORF1ab/nsp5A-B96P96SCctTct66B.1.6090.002876
ORF1ab/nsp5A-B96P96SCctTct55AY.290.000079
ORF1ab/nsp5A-B96P96SCctTct55AY.39.10.000198
ORF1ab/nsp5A-B96P96SCctTct55B.1.1.1890.007564
ORF1ab/nsp5A-B96P96SCctTct55B.1.214.20.002998
ORF1ab/nsp5A-B96P96SCctTct55B.1.2430.000348
ORF1ab/nsp5A-B96P96SCctTct55B.1.4270.000252
ORF1ab/nsp5A-B96P96SCctTct44AD.20.000876
ORF1ab/nsp5A-B96P96SCctTct44AY.1160.001147
ORF1ab/nsp5A-B96P96SCctTct44AY.450.000487
ORF1ab/nsp5A-B96P96SCctTct44AY.50.000083
ORF1ab/nsp5A-B96P96SCctTct44B.1.1.3260.007042
ORF1ab/nsp5A-B96P96SCctTct44B.1.1.3500.16
ORF1ab/nsp5A-B96P96SCctTct44B.1.1460.016949
ORF1ab/nsp5A-B96P96SCctTct44C.36.30.002269
ORF1ab/nsp5A-B96P96SCctTct33AY.1000.000138
ORF1ab/nsp5A-B96P96SCctTct33AY.200.000117
ORF1ab/nsp5A-B96P96SCctTct33AY.46.50.000595
ORF1ab/nsp5A-B96P96SCctTct33AY.610.000314
ORF1ab/nsp5A-B96P96SCctTct33AY.90.000203
ORF1ab/nsp5A-B96P96SCctTct33AY.940.001328
ORF1ab/nsp5A-B96P96SCctTct33B.1.1.280.000934
ORF1ab/nsp5A-B96P96SCctTct33B.1.1.4290.013825
ORF1ab/nsp5A-B96P96SCctTct33B.1.1.5190.000119
ORF1ab/nsp5A-B96P96SCctTct33B.1.177.70.000495
ORF1ab/nsp5A-B96P96SCctTct33B.1.2340.000396
ORF1ab/nsp5A-B96P96SCctTct33B.1.2580.0002
ORF1ab/nsp5A-B96P96SCctTct33B.1.360.000438
ORF1ab/nsp5A-B96P96SCctTct33B.1.36.290.001552
ORF1ab/nsp5A-B96P96SCctTct33B.1.4000.001287
ORF1ab/nsp5A-B96P96SCctTct33B.1.5640.001278
ORF1ab/nsp5A-B96P96SCctTct33B.1.621.10.001517
ORF1ab/nsp5A-B96P96SCctTct33P.20.00056
ORF1ab/nsp5A-B96P96SCcTTcC120.055556
ORF1ab/nsp5A-B96P96SCctTct120.055556
ORF1ab/nsp5A-B96P96SCctTct22A.2.50.000998
ORF1ab/nsp5A-B96P96SCctTct22AY.1010.000981
ORF1ab/nsp5A-B96P96SCctTct22AY.1200.000074
ORF1ab/nsp5A-B96P96SCctTct22AY.1210.000271
ORF1ab/nsp5A-B96P96SCctTct22AY.4.20.000043
ORF1ab/nsp5A-B96P96SCctTct22AY.420.00008
ORF1ab/nsp5A-B96P96SCctTct22AY.510.001818
ORF1ab/nsp5A-B96P96SCctTct22AY.550.001835
ORF1ab/nsp5A-B96P96SCctTct22AY.740.000231
ORF1ab/nsp5A-B96P96SCctTct22AY.930.000546
ORF1ab/nsp5A-B96P96SCctTct22B0.000256
ORF1ab/nsp5A-B96P96SCctTct22B.1.1.1610.007067
ORF1ab/nsp5A-B96P96SCctTct22B.1.1.250.001137
ORF1ab/nsp5A-B96P96SCctTct22B.1.1.3050.007722
ORF1ab/nsp5A-B96P96SCctTct22B.1.2210.000142
ORF1ab/nsp5A-B96P96SCctTct22B.1.2320.001075
ORF1ab/nsp5A-B96P96SCctTct22B.1.3670.001585
ORF1ab/nsp5A-B96P96SCctTct22B.1.5960.000174
ORF1ab/nsp5A-B96P96SCctTct22L.30.007092
ORF1ab/nsp5A-B96P96SCctTct11A0.000387
ORF1ab/nsp5A-B96P96SCctTct11A.270.001656
ORF1ab/nsp5A-B96P96SCctTct11AY.1070.000466
ORF1ab/nsp5A-B96P96SCctTct11AY.1140.000231
ORF1ab/nsp5A-B96P96SCctTct11AY.120.000316
ORF1ab/nsp5A-B96P96SCctTct11AY.20.000356
ORF1ab/nsp5A-B96P96SCctTct11AY.230.00007
ORF1ab/nsp5A-B96P96SCctTct11AY.260.000028
ORF1ab/nsp5A-B96P96SCctTct11AY.3.10.000085
ORF1ab/nsp5A-B96P96SCctTct11AY.330.000067
ORF1ab/nsp5A-B96P96SCctTct11AY.360.000148
ORF1ab/nsp5A-B96P96SCctTct11AY.4.30.000842
ORF1ab/nsp5A-B96P96SCctTct11AY.46.20.000635
ORF1ab/nsp5A-B96P96SCctTct11AY.5.30.000337
ORF1ab/nsp5A-B96P96SCctTct11AY.590.00053
ORF1ab/nsp5A-B96P96SCctTct11AY.620.000436
ORF1ab/nsp5A-B96P96SCctTct11AY.660.00107
ORF1ab/nsp5A-B96P96SCctTct11AY.680.000274
ORF1ab/nsp5A-B96P96SCctTct11AY.7.10.000113
ORF1ab/nsp5A-B96P96SCctTct11AY.750.000056
ORF1ab/nsp5A-B96P96SCctTct11AY.770.001127
ORF1ab/nsp5A-B96P96SCctTct11AY.9.20.000037
ORF1ab/nsp5A-B96P96SCctTct11AY.99.20.000092
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.2140.000055
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.3110.000358
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.3170.000412
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.3180.000302
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.3620.005618
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.370.000193
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.3880.045455
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.390.00051
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.4090.002833
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.4340.000349
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.4420.018519
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.700.000341
ORF1ab/nsp5A-B96P96SCctTct11B.1.110.30.000718
ORF1ab/nsp5A-B96P96SCctTct11B.1.1660.008475
ORF1ab/nsp5A-B96P96SCctTct11B.1.1700.00431
ORF1ab/nsp5A-B96P96SCctTct11B.1.177.600.000218
ORF1ab/nsp5A-B96P96SCctTct11B.1.177.770.000726
ORF1ab/nsp5A-B96P96SCctTct11B.1.177.80.000752
ORF1ab/nsp5A-B96P96SCctTct11B.1.177.810.000189
ORF1ab/nsp5A-B96P96SCctTct11B.1.2800.007143
ORF1ab/nsp5A-B96P96SCctTct11B.1.3360.002439
ORF1ab/nsp5A-B96P96SCctTct11B.1.36.190.009259
ORF1ab/nsp5A-B96P96SCctTct11B.1.438.10.000107
ORF1ab/nsp5A-B96P96SCctTct11B.1.4990.00105
ORF1ab/nsp5A-B96P96SCctTct11B.1.5210.004975
ORF1ab/nsp5A-B96P96SCctTct11B.1.5250.000113
ORF1ab/nsp5A-B96P96SCctTct11B.1.5750.000303
ORF1ab/nsp5A-B96P96SCctTct11B.1.575.20.004808
ORF1ab/nsp5A-B96P96SCctTct11B.1.5820.000491
ORF1ab/nsp5A-B96P96SCctTct11B.1.5950.000261
ORF1ab/nsp5A-B96P96SCctTct11B.1.6210.000089
ORF1ab/nsp5A-B96P96SCctTct11B.1.6280.000352
ORF1ab/nsp5A-B96P96SCctTct11B.1.9.50.005682
ORF1ab/nsp5A-B96P96SCctTct11B.1.930.000934
ORF1ab/nsp5A-B96P96SCctTct11B.4.80.071429
ORF1ab/nsp5A-B96P96SCctTct11C.1.20.004255
ORF1ab/nsp5A-B96P96SCctTct11D.20.000075
ORF1ab/nsp5A-B96P96SCctTct11P.1.10.000318
ORF1ab/nsp5A-B96P96SCctTct11P.1.120.000484
ORF1ab/nsp5A-B96P96SCctTct11P.1.130.000898
ORF1ab/nsp5A-B96P96SCctTct11P.1.70.000319
ORF1ab/nsp5A-B96P96SCctTct11Q.10.000126
ORF1ab/nsp5A-B96P96SCctTct11Q.80.000165