CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = P132P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	132	P132P	P3395P	syn	ccC	ccT	9367	9293	0.9921	10448-10450
ORF1ab/nsp5A-B	132	P132P	P3395P	syn	ccC	ccA	9367	72	0.00768656	10448-10450
ORF1ab/nsp5A-B	132	P132P	P3395P	syn	ccC	ccG	9367	2	0.000213516	10448-10450

Details of the mutation P132P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	9293	9367	All	0.001777
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	72	9367	All	0.000014
ORF1ab/nsp5A-B	132	P132P	ccC	ccG	2	9367	All	0
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1468	1468	B.1.526	0.034505
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	875	875	B.1.568	0.972222
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	851	860	B.1.1.7	0.000762
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	9	860	B.1.1.7	0.000008
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	823	829	AY.4	0.001281
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	6	829	AY.4	0.000009
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	523	532	B.1.617.2	0.001969
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	9	532	B.1.617.2	0.000034
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	522	526	AY.25	0.00314
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	4	526	AY.25	0.000024
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	523	523	B.1.582	0.256624
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	401	402	AY.43	0.001777
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	402	AY.43	0.000004
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	283	283	AY.9	0.019129
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	251	251	P.1	0.003954
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	242	242	B.1.499	0.254202
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	213	215	B.1	0.001951
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	2	215	B.1	0.000018
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	135	137	B.1.2	0.001189
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	2	137	B.1.2	0.000018
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	123	124	AY.44	0.000749
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	124	AY.44	0.000006
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	93	101	AY.102	0.002466
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	8	101	AY.102	0.000212
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	98	99	B.1.258	0.006522
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	99	B.1.258	0.000067
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	96	96	AY.32	0.051118
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	89	89	B.1.1.519	0.003534
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	77	77	AY.3	0.000766
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	69	70	B.1.1	0.001252
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	70	B.1.1	0.000018
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	68	69	B.1.429	0.0016
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	69	B.1.429	0.000024
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	68	68	B.1.1.141	0.136821
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	60	60	AY.103	0.000373
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	60	60	B.1.239	0.07326
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	52	52	B.1.351	0.001546
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	46	46	AY.5	0.00095
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	31	33	AY.39	0.000766
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	2	33	AY.39	0.000049
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	33	33	AY.42	0.001328
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	33	33	B.1.177	0.000435
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	31	31	AY.26	0.000878
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	27	27	B.1.1.70	0.009209
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	25	26	AY.47	0.000778
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	26	AY.47	0.000031
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	24	24	AY.29	0.000379
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	24	24	AY.39.1	0.000951
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	23	23	B.1.1.1	0.007514
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	21	21	AY.119	0.000741
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	21	21	AY.36	0.003112
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	19	19	A.28	0.050265
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	19	19	AY.100	0.000874
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	19	19	AY.3.1	0.00162
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	18	18	AY.46.4	0.002961
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	16	16	AY.20	0.000622
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	16	16	B.1.637	0.001169
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	16	16	C.37	0.001857
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	14	14	AY.27	0.000906
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	14	14	B.1.221	0.000994
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	14	14	B.1.36	0.002043
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	13	13	AY.40	0.012536
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	11	13	B.1.160	0.000343
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	2	13	B.1.160	0.000062
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	11	12	A	0.004257
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	12	A	0.000387
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	12	12	AY.4.2	0.00026
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	12	12	AY.83	0.02069
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	12	12	B.1.1.222	0.002448
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	12	12	B.1.612	0.03183
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	11	11	AY.14	0.000968
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	11	11	B.1.177.60	0.002403
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	11	11	Q.1	0.00139
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	9	10	AY.117	0.000761
ORF1ab/nsp5A-B	132	P132P	ccC	ccG	1	10	AY.117	0.000085
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	10	10	AY.4.2.1	0.00149
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	10	10	B.1.1.263	0.015576
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	10	10	B.1.609	0.004794
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	10	10	P.1.12	0.00484
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	9	9	AY.104	0.017857
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	9	9	B.1.177.35	0.00622
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	9	9	B.1.36.29	0.004656
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	9	9	B.1.617.1	0.001161
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	7	9	B.1.621	0.00062
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	2	9	B.1.621	0.000177
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	8	8	AY.6	0.000329
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	8	8	AY.75	0.000448
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	8	8	B.1.258.17	0.000832
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	8	8	B.1.427	0.000404
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	7	8	B.1.596	0.00061
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	8	B.1.596	0.000087
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	5	8	P.1.14	0.000239
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	8	P.1.14	0.000143
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	7	7	AY.61	0.000733
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	7	7	AY.70	0.00146
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	7	7	AY.95	0.005327
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	7	7	AY.99.2	0.000645
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	6	7	B	0.000767
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	7	B	0.000128
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	7	7	B.1.1.216	0.006233
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	7	7	B.1.1.63	0.002701
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	5	7	B.1.240	0.001078
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	7	B.1.240	0.000431
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	7	7	B.1.451	0.057377
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	7	7	P.2	0.001306
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	6	6	AY.111	0.001099
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	6	6	AY.120	0.000223
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	6	6	AY.121	0.000812
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	6	6	AY.23	0.000418
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	6	6	AY.98.1	0.000291
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	6	6	B.1.1.176	0.002636
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	6	6	B.1.1.189	0.009077
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	5	6	B.1.1.28	0.001556
ORF1ab/nsp5A-B	132	P132P	ccC	ccG	1	6	B.1.1.28	0.000311
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	6	6	B.1.369	0.001711
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	5	AY.24	0.001724
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	5	AY.24	0.000431
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	5	5	AY.5.3	0.001687
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	5	5	B.1.1.192	0.011547
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	5	5	B.1.1.50	0.003394
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	5	5	L.3	0.01773
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	5	5	Q.8	0.000825
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	5	5	R.1	0.00045
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	AY.114	0.000924
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	AY.118	0.000251
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	AY.38	0.001997
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	AY.46	0.000416
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	AY.64	0.002381
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	AY.75.1	0.000721
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	AY.9.2	0.000147
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	AY.98	0.000316
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	B.1.1.128	0.028369
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	B.1.1.318	0.001207
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	B.1.1.37	0.000771
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	B.1.214.1	0.08
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	B.1.36.31	0.007005
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	B.1.558	0.018265
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	B.1.565	0.003241
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	B.1.575	0.001214
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	B.1.588	0.00364
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	4	4	P.1.15	0.000929
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	A.2.5	0.001497
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	AY.12	0.000948
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	AY.16	0.001139
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	AY.16.1	0.00141
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	AY.7.1	0.000338
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	AY.85	0.001282
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.1.214	0.000166
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.1.284	0.000322
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.1.420	0.003018
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.177.79	0.007026
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.243	0.000209
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.36.17	0.001482
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.36.22	0.003623
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.36.28	0.017241
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.366	0.014634
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.367	0.002377
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.499.1	0.333333
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.595	0.000783
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	3	3	B.1.626	0.017143
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	A.21	0.00554
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AD.2	0.000438
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.106	0.00067
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.113	0.000285
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.116	0.000574
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	2	AY.30	0.000396
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	2	AY.30	0.000396
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.33	0.000134
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.34.1	0.00102
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	2	AY.45	0.000122
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	2	AY.45	0.000122
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.46.2	0.001271
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.46.3	0.001867
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.46.5	0.000397
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.5.4	0.000553
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.54	0.000191
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.55	0.001835
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.65	0.001066
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.73	0.001331
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.88	0.001768
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	AY.90	0.001369
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.1.25	0.001137
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.1.306	0.000877
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.1.311	0.000716
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.1.33	0.000842
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.1.354	0.008772
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.1.39	0.001019
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.131	0.017544
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.177.19	0.002861
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.177.42	0.001789
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.177.73	0.001133
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.177.75	0.002081
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.177.81	0.000379
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.177.86	0.000367
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.241	0.001623
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	2	2	B.1.284	0.026316
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.311	0.000549
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.351.2	0.000605
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.351.5	0.001199
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.36.18	0.00084
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.416	0.002538
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.498	0.040816
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.509	0.001732
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.573	0.012195
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.576	0.001813
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.621.1	0.001012
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.623	0.001073
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	B.1.635	0.035088
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	2	B.6	0.00091
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	2	B.6	0.00091
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	C.16	0.002121
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	L.1	0.00381
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	P.1.1	0.000635
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	P.1.10	0.000539
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	P.1.17	0.000324
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	2	2	Q.4	0.00091
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.108	0.001103
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.110	0.000113
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.13	0.000161
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.19	0.00114
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.29.1	0.000221
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.46.1	0.001027
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.46.6	0.000072
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.49	0.003195
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.5.1	0.003759
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.5.2	0.002463
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.63	0.000387
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.67	0.000464
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.68	0.000274
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.69	0.000187
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.71	0.000475
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.91	0.00073
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.99	0.001049
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	AY.99.1	0.001553
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.118	0.010204
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.148	0.008772
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.205	0.003717
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.226	0.005814
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.236	0.006897
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.269	0.001353
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.272	0.005208
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.289	0.002083
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.312	0.001912
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.337	0.003597
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.349	0.010309
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.369	0.000446
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.372	0.000689
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.385	0.004464
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.397	0.002252
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.1.521	0.005348
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.110	0.004525
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.110.3	0.000718
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.139	0.000733
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.143	0.021277
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.149	0.003425
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.157	0.002985
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.160.9	0.007194
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.177.12	0.000152
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.177.21	0.000076
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.177.44	0.000519
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.177.45	0.000381
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.177.51	0.004566
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.177.52	0.001757
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.177.57	0.000281
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.177.6	0.000977
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.177.7	0.000165
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.177.8	0.000752
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.206	0.000816
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.214	0.003663
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.232	0.000537
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.234	0.000132
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.243.1	0.022222
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.258.11	0.000396
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.258.14	0.00098
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.258.3	0.001675
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.258.6	0.019608
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.264	0.012346
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.279	0.000514
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.320	0.001245
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.351.3	0.000876
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.36.16	0.001425
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.36.8	0.001
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.389	0.001002
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.393	0.028571
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.396	0.000706
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.398	0.002976
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.403	0.003268
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.408	0.00369
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.424	0.008065
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.456	0.003268
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.466.2	0.000391
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.517	0.000427
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.527	0.003704
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.560	0.00463
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.564.1	0.001577
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.577	0.000687
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.580	0.004065
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.606	0.006024
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.619.1	0.000641
ORF1ab/nsp5A-B	132	P132P	ccC	ccA	1	1	B.1.628	0.000352
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.631	0.003367
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.1.9.5	0.005682
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.40	0.000364
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.6.6	0.000889
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	B.61	0.005747
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	C.1	0.002392
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	C.35	0.000774
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	D.2	0.000075
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	N.6	0.007092
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	N.9	0.005952
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	P.1.2	0.001156
ORF1ab/nsp5A-B	132	P132P	ccC	ccT	1	1	P.1.5	0.076923

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.