CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 108 | P108S | P3371S | nonsyn | Cca | Tca | 20257 | 20243 | 0.999309 | 10376-10378 |
ORF1ab/nsp5A-B | 108 | P108S | P3371S | nonsyn | CcA | TcG | 20257 | 14 | 0.000691119 | 10376-10378 |
Details of the mutation P108S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 20243 | 20257 | All | 0.003872 |
ORF1ab/nsp5A-B | 108 | P108S | CcA | TcG | 14 | 20257 | All | 0.000003 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 9310 | 9311 | B.1.1.284 | 0.999893 |
ORF1ab/nsp5A-B | 108 | P108S | CcA | TcG | 1 | 9311 | B.1.1.284 | 0.000107 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3553 | 3553 | B.1.1.7 | 0.003181 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 831 | 831 | AY.77 | 0.936866 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 690 | 690 | AY.4 | 0.001074 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 616 | 616 | AY.26 | 0.017439 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 367 | 367 | B.1.526 | 0.008626 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 287 | 287 | AY.54 | 0.027365 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 283 | 283 | B.1.2 | 0.002492 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 262 | 262 | B.1.617.2 | 0.000987 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 235 | 235 | AY.70 | 0.048999 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 228 | 228 | B.1.1 | 0.004136 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 212 | 212 | B.1.1.135 | 0.995305 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 168 | 168 | B.1.177.81 | 0.031806 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 155 | 155 | AY.103 | 0.000962 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 146 | 146 | P.1.1 | 0.046379 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 141 | 141 | B.1.177 | 0.001857 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 128 | 128 | B.1.160 | 0.003992 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 119 | 119 | B.1.44 | 0.991667 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 117 | 117 | AY.25 | 0.000704 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 111 | 111 | AY.44 | 0.000676 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 104 | 104 | B.1 | 0.000953 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 100 | 100 | P.1 | 0.001575 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 93 | 93 | B.1.351 | 0.002765 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 79 | 79 | B.1.1.519 | 0.003137 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 67 | 79 | B.1.258 | 0.004459 |
ORF1ab/nsp5A-B | 108 | P108S | CcA | TcG | 12 | 79 | B.1.258 | 0.000799 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 79 | 79 | B.1.429 | 0.001859 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 72 | 72 | B.1.240 | 0.015521 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 66 | 66 | B.1.637 | 0.004823 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 63 | 63 | AY.3 | 0.000627 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 62 | 62 | AY.5 | 0.00128 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 58 | 58 | AY.43 | 0.000257 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 55 | 55 | B.1.221 | 0.003907 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 51 | 51 | B.1.1.320 | 0.927273 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 49 | 49 | B.1.258.15 | 0.924528 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 43 | 43 | B.1.564.1 | 0.067823 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 42 | 42 | B.1.1.160 | 1 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 41 | 41 | B.1.1.37 | 0.007907 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 39 | 39 | AY.4.2 | 0.000846 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 36 | 36 | AY.29 | 0.000568 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 35 | 35 | AY.20 | 0.00136 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 33 | 33 | AY.29.1 | 0.007277 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 30 | 30 | N.10 | 0.882353 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 28 | 28 | AY.39 | 0.000692 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 27 | 27 | Q.4 | 0.012278 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 26 | 26 | B.1.318 | 1 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 24 | 24 | B.1.1.241 | 0.049689 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 23 | 23 | B.1.258.17 | 0.002391 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 22 | 22 | AY.47 | 0.000684 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 21 | 21 | B.1.258.11 | 0.008323 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 20 | 20 | AY.9.1 | 0.001674 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 19 | 19 | AY.9 | 0.001284 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 17 | 17 | AY.106 | 0.005693 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 17 | 17 | AY.62 | 0.007407 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 17 | 17 | B.1.36 | 0.00248 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 17 | 17 | C.37 | 0.001973 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 16 | 16 | AY.119 | 0.000565 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 16 | 16 | AY.42 | 0.000644 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 16 | 16 | AY.99.2 | 0.001475 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 16 | 16 | B.1.320 | 0.019925 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 15 | 15 | B.1.1.318 | 0.004526 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 14 | 14 | AY.33 | 0.000935 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 14 | 14 | AY.98 | 0.001106 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 14 | 14 | B.1.1.33 | 0.005892 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 14 | 14 | B.1.1.392 | 0.736842 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 13 | 13 | AY.39.1 | 0.000515 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 13 | 13 | AY.75 | 0.000728 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 13 | 13 | B.1.177.21 | 0.000994 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 12 | 12 | AY.36 | 0.001779 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 11 | 11 | C.35 | 0.008514 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 10 | 10 | B.1.1.50 | 0.006789 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 10 | 10 | B.1.595 | 0.00261 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 9 | 9 | B.1.177.73 | 0.005096 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 8 | 8 | P.1.15 | 0.001859 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | B.1.1.10 | 0.006689 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | B.1.564 | 0.002555 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | B.1.609 | 0.002876 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AP.1 | 0.007508 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | AY.99.1 | 0.006211 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | B.1.517 | 0.001708 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.7.2 | 0.001678 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.1.253 | 0.007519 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.1.265 | 0.009464 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.124 | 0.023438 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.243.1 | 0.066667 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.389 | 0.003006 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 3 | 3 | P.7 | 0.0131 |
ORF1ab/nsp5A-B | 108 | P108S | CcA | TcG | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B | 0.000256 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.1.56 | 0.035714 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.177.84 | 0.013333 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.223 | 0.005556 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.298 | 0.004228 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.390 | 0.021277 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | C.13 | 0.051282 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.14 | 0.017241 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.267 | 0.010101 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.425 | 0.045455 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.45 | 0.014085 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.1.506 | 0.037037 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.110.1 | 0.1 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.53 | 0.011765 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | C.36.2 | 0.034483 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp5A-B | 108 | P108S | Cca | Tca | 1 | 1 | W.1 | 0.008696 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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