CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = L89L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B89L89LL3352LsynctTctC92810.88043510319-10321
ORF1ab/nsp5A-B89L89LL3352LsynctTctG9260.065217410319-10321
ORF1ab/nsp5A-B89L89LL3352LsynctTctA9250.054347810319-10321

Details of the mutation L89L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B89L89LctTctC8192All0.000015
ORF1ab/nsp5A-B89L89LctTctG692All0.000001
ORF1ab/nsp5A-B89L89LctTctA592All0.000001
ORF1ab/nsp5A-B89L89LctTctC1313AY.440.000079
ORF1ab/nsp5A-B89L89LctTctC99B.1.617.20.000034
ORF1ab/nsp5A-B89L89LctTctC77B.1.5250.000792
ORF1ab/nsp5A-B89L89LctTctC56B.1.1.70.000004
ORF1ab/nsp5A-B89L89LctTctG16B.1.1.70.000001
ORF1ab/nsp5A-B89L89LctTctC45AY.40.000006
ORF1ab/nsp5A-B89L89LctTctA15AY.40.000002
ORF1ab/nsp5A-B89L89LctTctC55B.1.2580.000333
ORF1ab/nsp5A-B89L89LctTctC44AY.140.000352
ORF1ab/nsp5A-B89L89LctTctG44AY.260.000113
ORF1ab/nsp5A-B89L89LctTctA230.111111
ORF1ab/nsp5A-B89L89LctTctC130.055556
ORF1ab/nsp5A-B89L89LctTctC33AY.230.000209
ORF1ab/nsp5A-B89L89LctTctC33B.10.000027
ORF1ab/nsp5A-B89L89LctTctC33B.60.00273
ORF1ab/nsp5A-B89L89LctTctC33Q.30.000435
ORF1ab/nsp5A-B89L89LctTctC22AY.1090.001479
ORF1ab/nsp5A-B89L89LctTctC22AY.1190.000071
ORF1ab/nsp5A-B89L89LctTctC22B.1.360.000292
ORF1ab/nsp5A-B89L89LctTctA22P.10.000032
ORF1ab/nsp5A-B89L89LctTctC22Q.10.000253
ORF1ab/nsp5A-B89L89LctTctC11AY.1020.000027
ORF1ab/nsp5A-B89L89LctTctC11AY.1030.000006
ORF1ab/nsp5A-B89L89LctTctC11AY.250.000006
ORF1ab/nsp5A-B89L89LctTctC11AY.330.000067
ORF1ab/nsp5A-B89L89LctTctC11AY.430.000004
ORF1ab/nsp5A-B89L89LctTctC11AY.540.000095
ORF1ab/nsp5A-B89L89LctTctC11B.1.1.2220.000204
ORF1ab/nsp5A-B89L89LctTctC11B.1.20.000009
ORF1ab/nsp5A-B89L89LctTctC11B.1.2340.000132
ORF1ab/nsp5A-B89L89LctTctC11B.1.258.30.001675
ORF1ab/nsp5A-B89L89LctTctC11B.1.3130.006579
ORF1ab/nsp5A-B89L89LctTctG11B.1.351.30.000876
ORF1ab/nsp5A-B89L89LctTctC11B.1.4700.001404
ORF1ab/nsp5A-B89L89LctTctC11B.310.003731