CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 75 | L75L | L3338L | syn | ctC | ctT | 17723 | 17675 | 0.997292 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75L | L3338L | syn | ctC | ctA | 17723 | 43 | 0.00242623 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75L | L3338L | syn | ctC | ctG | 17723 | 5 | 0.000282119 | 10277-10279 |
Details of the mutation L75L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 17675 | 17723 | All | 0.003381 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 43 | 17723 | All | 0.000008 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctG | 5 | 17723 | All | 0.000001 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6463 | 6483 | B.1.1.7 | 0.005786 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 19 | 6483 | B.1.1.7 | 0.000017 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctG | 1 | 6483 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2875 | 2878 | AY.4 | 0.004475 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 3 | 2878 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1129 | 1129 | B.1.367 | 0.894612 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 798 | 798 | AY.4.2 | 0.017308 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 369 | 369 | B.1.617.2 | 0.001389 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 344 | 344 | AY.75.1 | 0.062027 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 334 | 334 | AY.44 | 0.002033 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 317 | 317 | AY.82 | 0.430122 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 305 | 305 | AY.3 | 0.003034 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 238 | 242 | B.1 | 0.00218 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 3 | 242 | B.1 | 0.000027 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctG | 1 | 242 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 206 | 206 | AY.103 | 0.001279 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 200 | 200 | P.2 | 0.037327 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 191 | 191 | B.1.429 | 0.004494 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 185 | 185 | AY.43 | 0.00082 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 184 | 185 | B.1.177 | 0.002423 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 185 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 175 | 175 | B.1.427 | 0.008837 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 173 | 173 | B.1.2 | 0.001523 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 159 | 159 | B.1.637 | 0.011619 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 137 | 137 | AY.25 | 0.000824 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 128 | 128 | AY.6 | 0.005264 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 127 | 127 | B.1.221 | 0.009021 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 113 | 114 | B.1.1 | 0.00205 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 114 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 111 | 111 | B.1.243 | 0.007724 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 89 | 89 | P.1 | 0.001402 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 80 | 80 | B.1.177.35 | 0.055287 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 77 | 78 | Q.8 | 0.012698 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 78 | Q.8 | 0.000165 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 66 | 66 | B.1.445 | 0.776471 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 65 | 65 | AY.119 | 0.002295 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 63 | 63 | AY.102 | 0.00167 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 62 | 62 | B.1.351 | 0.001843 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 51 | 51 | B.1.526 | 0.001199 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 49 | 49 | AY.118 | 0.00307 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 48 | 48 | C.37 | 0.005571 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 47 | 47 | R.1 | 0.00423 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 44 | 44 | B.1.1.214 | 0.00244 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 42 | 42 | AY.54 | 0.004005 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 42 | 42 | AY.98.1 | 0.002034 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 41 | 41 | AY.23 | 0.00286 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 40 | 40 | B.1.177.12 | 0.006068 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 39 | 39 | AY.29 | 0.000615 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 38 | 38 | B.1.621 | 0.003364 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 36 | 36 | B.1.160 | 0.001123 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 35 | 35 | B.1.1.519 | 0.00139 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 34 | 34 | AY.20 | 0.001321 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 32 | 32 | AY.39 | 0.000791 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 32 | 32 | AY.99.2 | 0.002949 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 31 | 31 | AY.26 | 0.000878 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 31 | 31 | AY.9 | 0.002095 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 28 | 28 | B.1.408 | 0.103321 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 27 | 27 | AY.36 | 0.004002 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 27 | 27 | Q.1 | 0.003411 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 25 | 25 | AY.9.2 | 0.000918 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 23 | 24 | AY.120 | 0.000855 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 24 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 24 | 24 | B.1.258 | 0.001597 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 23 | 23 | AY.3.1 | 0.001961 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 23 | 23 | B.1.1.297 | 0.051454 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 23 | 23 | B.1.1.70 | 0.007844 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 23 | 23 | B.1.596 | 0.002004 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 22 | 22 | AY.5 | 0.000454 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 19 | 20 | B.1.177.81 | 0.003597 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 20 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 19 | 19 | AY.100 | 0.000874 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 19 | 19 | AY.45 | 0.002312 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 19 | 19 | B.1.561 | 0.007543 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 18 | 18 | AY.42 | 0.000724 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 17 | 17 | B.1.177.54 | 0.010309 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 16 | 16 | AY.61 | 0.001676 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 16 | 16 | B.1.177.42 | 0.014311 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 16 | 16 | B.1.177.87 | 0.011645 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 15 | 15 | AY.84 | 0.006562 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 13 | 14 | AY.33 | 0.000868 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 14 | AY.33 | 0.000067 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 13 | 13 | B.1.214.4 | 0.118182 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 13 | 13 | B.1.577 | 0.008935 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 12 | 12 | A.2.5 | 0.005988 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 12 | 12 | AY.111 | 0.002198 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 11 | 11 | B.1.620 | 0.010407 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | AY.14 | 0.00088 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | AY.46.4 | 0.001645 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 10 | AY.47 | 0.00028 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 10 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | B | 0.001278 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | B.1.1.63 | 0.003858 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 9 | B.1.177.82 | 0.004296 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 9 | B.1.369 | 0.002567 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 8 | 8 | AY.121 | 0.001083 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 8 | 8 | B.1.1.284 | 0.000859 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 7 | 7 | B.1.1.294 | 0.008861 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | AY.105 | 0.003859 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | B.1.139 | 0.004399 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 5 | 6 | B.1.258.17 | 0.00052 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 6 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | B.1.597 | 0.027778 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 6 | B.1.628 | 0.001057 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 3 | 6 | B.1.628 | 0.001057 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.1.343 | 0.104167 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.160.16 | 0.004647 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.177.18 | 0.0058 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.177.32 | 0.006748 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.258.14 | 0.004902 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.619.1 | 0.003207 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 5 | D.2 | 0.0003 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctG | 1 | 5 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | P.1.2 | 0.00578 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | AY.104 | 0.007937 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | AY.86 | 0.00332 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.241 | 0.008282 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.312 | 0.007648 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 4 | B.1.1.33 | 0.001263 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 4 | B.1.1.33 | 0.000421 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.433 | 0.005698 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.507 | 0.034783 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.525 | 0.021858 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.177.15 | 0.002524 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.177.83 | 0.005926 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.221.3 | 0.003333 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.3 | 0.010471 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.476 | 0.4 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | N.5 | 0.007067 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctG | 2 | 3 | 0.111111 | |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | A.27 | 0.004967 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.66 | 0.003209 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.1.44 | 0.007229 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.1.46 | 0.0131 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.1.506 | 0.111111 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.177.11 | 0.005093 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.258.11 | 0.001189 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.405 | 0.037037 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.523 | 0.007353 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | N.4 | 0.012766 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | W.3 | 0.015789 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AT.1 | 0.010256 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.123 | 0.035714 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.417 | 0.005405 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 2 | B.1.177.86 | 0.000183 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 2 | B.1.177.86 | 0.000183 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.36.24 | 0.012346 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.403 | 0.006536 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.45 | 0.007663 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | D.3 | 0.011834 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.480 | 0.025 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.208 | 0.04 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.224 | 0.025 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | W.1 | 0.008696 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | W.4 | 0.001351 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | Y.1 | 0.012821 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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