CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = L75L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	75	L75L	L3338L	syn	ctC	ctT	17723	17675	0.997292	10277-10279
ORF1ab/nsp5A-B	75	L75L	L3338L	syn	ctC	ctA	17723	43	0.00242623	10277-10279
ORF1ab/nsp5A-B	75	L75L	L3338L	syn	ctC	ctG	17723	5	0.000282119	10277-10279

Details of the mutation L75L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	17675	17723	All	0.003381
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	43	17723	All	0.000008
ORF1ab/nsp5A-B	75	L75L	ctC	ctG	5	17723	All	0.000001
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	6463	6483	B.1.1.7	0.005786
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	19	6483	B.1.1.7	0.000017
ORF1ab/nsp5A-B	75	L75L	ctC	ctG	1	6483	B.1.1.7	0.000001
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2875	2878	AY.4	0.004475
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	3	2878	AY.4	0.000005
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1129	1129	B.1.367	0.894612
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	798	798	AY.4.2	0.017308
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	369	369	B.1.617.2	0.001389
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	344	344	AY.75.1	0.062027
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	334	334	AY.44	0.002033
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	317	317	AY.82	0.430122
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	305	305	AY.3	0.003034
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	238	242	B.1	0.00218
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	3	242	B.1	0.000027
ORF1ab/nsp5A-B	75	L75L	ctC	ctG	1	242	B.1	0.000009
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	206	206	AY.103	0.001279
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	200	200	P.2	0.037327
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	191	191	B.1.429	0.004494
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	185	185	AY.43	0.00082
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	184	185	B.1.177	0.002423
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	1	185	B.1.177	0.000013
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	175	175	B.1.427	0.008837
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	173	173	B.1.2	0.001523
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	159	159	B.1.637	0.011619
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	137	137	AY.25	0.000824
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	128	128	AY.6	0.005264
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	127	127	B.1.221	0.009021
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	113	114	B.1.1	0.00205
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	1	114	B.1.1	0.000018
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	111	111	B.1.243	0.007724
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	89	89	P.1	0.001402
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	80	80	B.1.177.35	0.055287
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	77	78	Q.8	0.012698
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	1	78	Q.8	0.000165
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	66	66	B.1.445	0.776471
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	65	65	AY.119	0.002295
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	63	63	AY.102	0.00167
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	62	62	B.1.351	0.001843
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	51	51	B.1.526	0.001199
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	49	49	AY.118	0.00307
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	48	48	C.37	0.005571
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	47	47	R.1	0.00423
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	44	44	B.1.1.214	0.00244
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	42	42	AY.54	0.004005
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	42	42	AY.98.1	0.002034
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	41	41	AY.23	0.00286
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	40	40	B.1.177.12	0.006068
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	39	39	AY.29	0.000615
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	38	38	B.1.621	0.003364
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	36	36	B.1.160	0.001123
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	35	35	B.1.1.519	0.00139
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	34	34	AY.20	0.001321
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	32	32	AY.39	0.000791
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	32	32	AY.99.2	0.002949
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	31	31	AY.26	0.000878
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	31	31	AY.9	0.002095
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	28	28	B.1.408	0.103321
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	27	27	AY.36	0.004002
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	27	27	Q.1	0.003411
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	25	25	AY.9.2	0.000918
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	23	24	AY.120	0.000855
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	1	24	AY.120	0.000037
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	24	24	B.1.258	0.001597
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	23	23	AY.3.1	0.001961
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	23	23	B.1.1.297	0.051454
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	23	23	B.1.1.70	0.007844
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	23	23	B.1.596	0.002004
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	22	22	AY.5	0.000454
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	19	20	B.1.177.81	0.003597
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	1	20	B.1.177.81	0.000189
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	19	19	AY.100	0.000874
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	19	19	AY.45	0.002312
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	19	19	B.1.561	0.007543
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	18	18	AY.42	0.000724
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	17	17	B.1.177.54	0.010309
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	16	16	AY.61	0.001676
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	16	16	B.1.177.42	0.014311
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	16	16	B.1.177.87	0.011645
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	15	15	AY.84	0.006562
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	13	14	AY.33	0.000868
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	1	14	AY.33	0.000067
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	13	13	B.1.214.4	0.118182
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	13	13	B.1.577	0.008935
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	12	12	A.2.5	0.005988
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	12	12	AY.111	0.002198
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	11	11	B.1.620	0.010407
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	10	10	AY.113	0.001424
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	10	10	AY.14	0.00088
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	10	10	AY.46.4	0.001645
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	9	10	AY.47	0.00028
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	1	10	AY.47	0.000031
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	10	10	B	0.001278
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	10	10	B.1.1.63	0.003858
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	10	10	P.1.14	0.000478
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	9	9	AY.117	0.000761
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	9	9	AY.13	0.001449
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	9	9	B.1.177.82	0.004296
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	9	9	B.1.369	0.002567
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	9	9	B.1.617.1	0.001161
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	8	8	AY.121	0.001083
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	8	8	AY.27	0.000518
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	8	8	AY.46.6	0.000578
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	8	8	B.1.1.284	0.000859
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	7	7	AY.98	0.000553
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	7	7	B.1.1.294	0.008861
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	7	7	B.1.234	0.000924
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	6	6	AY.105	0.003859
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	6	6	AY.39.1	0.000238
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	6	6	AY.46	0.000624
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	6	6	B.1.139	0.004399
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	6	6	B.1.232	0.003224
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	5	6	B.1.258.17	0.00052
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	6	B.1.258.17	0.000104
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	6	6	B.1.597	0.027778
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	6	B.1.628	0.001057
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	3	6	B.1.628	0.001057
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	AY.74	0.000578
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	AY.75	0.00028
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	B.1.1.222	0.00102
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	B.1.1.343	0.104167
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	B.1.1.37	0.000964
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	B.1.160.16	0.004647
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	B.1.177.18	0.0058
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	B.1.177.32	0.006748
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	B.1.258.14	0.004902
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	B.1.466.2	0.001956
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	B.1.619.1	0.003207
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	5	D.2	0.0003
ORF1ab/nsp5A-B	75	L75L	ctC	ctG	1	5	D.2	0.000075
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	5	5	P.1.2	0.00578
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	AY.104	0.007937
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	AY.35	0.000932
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	AY.68	0.001095
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	AY.86	0.00332
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	AY.9.1	0.000335
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.1.241	0.008282
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.1.312	0.007648
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	4	B.1.1.33	0.001263
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	1	4	B.1.1.33	0.000421
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.1.348	0.003185
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.1.433	0.005698
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.1.507	0.034783
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.1.525	0.021858
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.177.15	0.002524
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.177.21	0.000306
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.177.57	0.001124
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.177.83	0.005926
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.221.3	0.003333
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.3	0.010471
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.351.2	0.00121
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.36	0.000584
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.425	0.011976
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.438.1	0.000429
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	B.1.476	0.4
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	N.5	0.007067
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	4	4	P.1.15	0.000929
ORF1ab/nsp5A-B	75	L75L	ctC	ctG	2	3		0.111111
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	3		0.055556
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	A.27	0.004967
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.106	0.001005
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.116	0.00086
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.116.1	0.000934
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.120.2.1	0.001495
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.19	0.003421
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.32	0.001597
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.34	0.000291
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.58	0.002722
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.62	0.001307
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.66	0.003209
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.69	0.00056
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	AY.70	0.000626
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.1.44	0.007229
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.1.46	0.0131
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.1.506	0.111111
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.177.11	0.005093
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.214.2	0.001799
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.240	0.000647
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.258.11	0.001189
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.311	0.000824
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.36.29	0.001552
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.399	0.005803
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.405	0.037037
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.499	0.003151
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.517	0.001281
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	B.1.523	0.007353
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	C.36	0.002732
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	C.36.3	0.001702
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	N.4	0.012766
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	P.1.4	0.00293
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	Q.4	0.001364
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	3	3	W.3	0.015789
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	A	0.000774
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AT.1	0.010256
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AY.10	0.00106
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AY.107	0.000932
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AY.120.1	0.000642
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AY.30	0.000791
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AY.4.5	0.000215
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AY.40	0.001929
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AY.67	0.000929
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AY.7.1	0.000225
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AY.92	0.000575
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	AY.93	0.000546
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.1.123	0.035714
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.1.157	0.001826
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.1.159	0.009346
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.1.189	0.003026
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.1.316	0.00185
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.1.39	0.001019
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.1.417	0.005405
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.1.432	0.002532
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.1.50	0.001358
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.1.523	0.003125
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.111	0.00235
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.177.60	0.000437
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.177.77	0.001452
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	1	2	B.1.177.86	0.000183
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	2	B.1.177.86	0.000183
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.265	0.002541
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.279	0.001027
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.336	0.004878
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.346	0.002621
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.351.3	0.001753
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.36.17	0.000988
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.36.24	0.012346
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.36.38	0.003284
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.36.8	0.002
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.403	0.006536
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.456	0.006536
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.497	0.00063
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.525	0.000226
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.560	0.009259
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.564	0.000852
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.595	0.000522
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.1.627	0.00404
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	B.45	0.007663
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	C.14	0.008658
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	D.3	0.011834
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	P.1.1	0.000635
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	P.1.10	0.000539
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	P.1.17	0.000324
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	2	2	Q.3	0.00029
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	A.2.5.1	0.004808
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	A.23.1	0.000704
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AD.2	0.000219
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.1	0.000396
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.101	0.00049
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.114	0.000231
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.16	0.00038
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.24	0.000431
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.41	0.000294
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.46.1	0.001027
ORF1ab/nsp5A-B	75	L75L	ctC	ctA	1	1	AY.48	0.000465
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.5.3	0.000337
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.53	0.000288
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.55	0.000917
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.59	0.00053
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.65	0.000533
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.7	0.000196
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.7.2	0.000559
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.8	0.000606
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.80	0.001129
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.85	0.000427
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.87	0.000833
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.88	0.000884
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.90	0.000684
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AY.91	0.00073
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	AZ.3	0.00152
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.141	0.002012
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.161	0.003534
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.176	0.000439
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.207	0.001182
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.216	0.00089
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.221	0.010101
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.240	0.004695
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.277	0.000759
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.28	0.000311
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.286	0.002899
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.298	0.000862
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.326	0.001761
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.334	0.016393
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.355	0.015385
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.369	0.000446
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.374	0.002375
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.376	0.005952
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.385	0.004464
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.402	0.011111
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.413	0.006897
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.416	0.000905
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.434	0.000349
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.480	0.025
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.1.486	0.001577
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.103	0.019231
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.157	0.002985
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.160.29	0.004219
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.160.9	0.007194
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.177.17	0.000821
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.177.44	0.000519
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.177.46	0.000918
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.177.51	0.004566
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.177.6	0.000977
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.177.65	0.000665
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.177.7	0.000165
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.177.75	0.001041
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.177.8	0.000752
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.179	0.003759
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.208	0.04
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.210	0.002132
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.211	0.025
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.213	0.014925
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.224	0.025
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.284	0.013158
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.320	0.001245
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.326	0.007576
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.329	0.000608
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.349	0.000715
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.356	0.001727
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.36.1	0.00114
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.36.16	0.001425
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.362	0.001541
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.377	0.004566
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.389	0.001002
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.390	0.010638
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.396	0.000706
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.400	0.000429
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.409	0.000781
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.413	0.004255
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.416.1	0.001563
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.428	0.00102
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.439	0.005917
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.503	0.002488
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.509	0.000866
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.524	0.001406
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.538	0.008065
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.551	0.00129
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.574	0.002151
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.576	0.000907
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.580	0.004065
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.582	0.000491
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.585	0.027778
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.595.1	0.005848
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.609	0.000479
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.617.3	0.002985
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.618	0.004032
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.623	0.000536
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.634	0.003425
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.1.91	0.002075
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.34	0.013699
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.40	0.000364
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	B.6.8	0.008264
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	P.1.12	0.000484
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	P.1.16	0.000374
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	P.6	0.003145
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	P.7	0.004367
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	Q.2	0.000613
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	W.1	0.008696
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	W.4	0.001351
ORF1ab/nsp5A-B	75	L75L	ctC	ctT	1	1	Y.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.