CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = L75L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B75L75LL3338LsynctCctT17723176750.99729210277-10279
ORF1ab/nsp5A-B75L75LL3338LsynctCctA17723430.0024262310277-10279
ORF1ab/nsp5A-B75L75LL3338LsynctCctG1772350.00028211910277-10279

Details of the mutation L75L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B75L75LctCctT1767517723All0.003381
ORF1ab/nsp5A-B75L75LctCctA4317723All0.000008
ORF1ab/nsp5A-B75L75LctCctG517723All0.000001
ORF1ab/nsp5A-B75L75LctCctT64636483B.1.1.70.005786
ORF1ab/nsp5A-B75L75LctCctA196483B.1.1.70.000017
ORF1ab/nsp5A-B75L75LctCctG16483B.1.1.70.000001
ORF1ab/nsp5A-B75L75LctCctT28752878AY.40.004475
ORF1ab/nsp5A-B75L75LctCctA32878AY.40.000005
ORF1ab/nsp5A-B75L75LctCctT11291129B.1.3670.894612
ORF1ab/nsp5A-B75L75LctCctT798798AY.4.20.017308
ORF1ab/nsp5A-B75L75LctCctT369369B.1.617.20.001389
ORF1ab/nsp5A-B75L75LctCctT344344AY.75.10.062027
ORF1ab/nsp5A-B75L75LctCctT334334AY.440.002033
ORF1ab/nsp5A-B75L75LctCctT317317AY.820.430122
ORF1ab/nsp5A-B75L75LctCctT305305AY.30.003034
ORF1ab/nsp5A-B75L75LctCctT238242B.10.00218
ORF1ab/nsp5A-B75L75LctCctA3242B.10.000027
ORF1ab/nsp5A-B75L75LctCctG1242B.10.000009
ORF1ab/nsp5A-B75L75LctCctT206206AY.1030.001279
ORF1ab/nsp5A-B75L75LctCctT200200P.20.037327
ORF1ab/nsp5A-B75L75LctCctT191191B.1.4290.004494
ORF1ab/nsp5A-B75L75LctCctT185185AY.430.00082
ORF1ab/nsp5A-B75L75LctCctT184185B.1.1770.002423
ORF1ab/nsp5A-B75L75LctCctA1185B.1.1770.000013
ORF1ab/nsp5A-B75L75LctCctT175175B.1.4270.008837
ORF1ab/nsp5A-B75L75LctCctT173173B.1.20.001523
ORF1ab/nsp5A-B75L75LctCctT159159B.1.6370.011619
ORF1ab/nsp5A-B75L75LctCctT137137AY.250.000824
ORF1ab/nsp5A-B75L75LctCctT128128AY.60.005264
ORF1ab/nsp5A-B75L75LctCctT127127B.1.2210.009021
ORF1ab/nsp5A-B75L75LctCctT113114B.1.10.00205
ORF1ab/nsp5A-B75L75LctCctA1114B.1.10.000018
ORF1ab/nsp5A-B75L75LctCctT111111B.1.2430.007724
ORF1ab/nsp5A-B75L75LctCctT8989P.10.001402
ORF1ab/nsp5A-B75L75LctCctT8080B.1.177.350.055287
ORF1ab/nsp5A-B75L75LctCctT7778Q.80.012698
ORF1ab/nsp5A-B75L75LctCctA178Q.80.000165
ORF1ab/nsp5A-B75L75LctCctT6666B.1.4450.776471
ORF1ab/nsp5A-B75L75LctCctT6565AY.1190.002295
ORF1ab/nsp5A-B75L75LctCctT6363AY.1020.00167
ORF1ab/nsp5A-B75L75LctCctT6262B.1.3510.001843
ORF1ab/nsp5A-B75L75LctCctT5151B.1.5260.001199
ORF1ab/nsp5A-B75L75LctCctT4949AY.1180.00307
ORF1ab/nsp5A-B75L75LctCctT4848C.370.005571
ORF1ab/nsp5A-B75L75LctCctT4747R.10.00423
ORF1ab/nsp5A-B75L75LctCctT4444B.1.1.2140.00244
ORF1ab/nsp5A-B75L75LctCctT4242AY.540.004005
ORF1ab/nsp5A-B75L75LctCctT4242AY.98.10.002034
ORF1ab/nsp5A-B75L75LctCctT4141AY.230.00286
ORF1ab/nsp5A-B75L75LctCctT4040B.1.177.120.006068
ORF1ab/nsp5A-B75L75LctCctT3939AY.290.000615
ORF1ab/nsp5A-B75L75LctCctT3838B.1.6210.003364
ORF1ab/nsp5A-B75L75LctCctT3636B.1.1600.001123
ORF1ab/nsp5A-B75L75LctCctT3535B.1.1.5190.00139
ORF1ab/nsp5A-B75L75LctCctT3434AY.200.001321
ORF1ab/nsp5A-B75L75LctCctT3232AY.390.000791
ORF1ab/nsp5A-B75L75LctCctT3232AY.99.20.002949
ORF1ab/nsp5A-B75L75LctCctT3131AY.260.000878
ORF1ab/nsp5A-B75L75LctCctT3131AY.90.002095
ORF1ab/nsp5A-B75L75LctCctT2828B.1.4080.103321
ORF1ab/nsp5A-B75L75LctCctT2727AY.360.004002
ORF1ab/nsp5A-B75L75LctCctT2727Q.10.003411
ORF1ab/nsp5A-B75L75LctCctT2525AY.9.20.000918
ORF1ab/nsp5A-B75L75LctCctT2324AY.1200.000855
ORF1ab/nsp5A-B75L75LctCctA124AY.1200.000037
ORF1ab/nsp5A-B75L75LctCctT2424B.1.2580.001597
ORF1ab/nsp5A-B75L75LctCctT2323AY.3.10.001961
ORF1ab/nsp5A-B75L75LctCctT2323B.1.1.2970.051454
ORF1ab/nsp5A-B75L75LctCctT2323B.1.1.700.007844
ORF1ab/nsp5A-B75L75LctCctT2323B.1.5960.002004
ORF1ab/nsp5A-B75L75LctCctT2222AY.50.000454
ORF1ab/nsp5A-B75L75LctCctT1920B.1.177.810.003597
ORF1ab/nsp5A-B75L75LctCctA120B.1.177.810.000189
ORF1ab/nsp5A-B75L75LctCctT1919AY.1000.000874
ORF1ab/nsp5A-B75L75LctCctT1919AY.450.002312
ORF1ab/nsp5A-B75L75LctCctT1919B.1.5610.007543
ORF1ab/nsp5A-B75L75LctCctT1818AY.420.000724
ORF1ab/nsp5A-B75L75LctCctT1717B.1.177.540.010309
ORF1ab/nsp5A-B75L75LctCctT1616AY.610.001676
ORF1ab/nsp5A-B75L75LctCctT1616B.1.177.420.014311
ORF1ab/nsp5A-B75L75LctCctT1616B.1.177.870.011645
ORF1ab/nsp5A-B75L75LctCctT1515AY.840.006562
ORF1ab/nsp5A-B75L75LctCctT1314AY.330.000868
ORF1ab/nsp5A-B75L75LctCctA114AY.330.000067
ORF1ab/nsp5A-B75L75LctCctT1313B.1.214.40.118182
ORF1ab/nsp5A-B75L75LctCctT1313B.1.5770.008935
ORF1ab/nsp5A-B75L75LctCctT1212A.2.50.005988
ORF1ab/nsp5A-B75L75LctCctT1212AY.1110.002198
ORF1ab/nsp5A-B75L75LctCctT1111B.1.6200.010407
ORF1ab/nsp5A-B75L75LctCctT1010AY.1130.001424
ORF1ab/nsp5A-B75L75LctCctT1010AY.140.00088
ORF1ab/nsp5A-B75L75LctCctT1010AY.46.40.001645
ORF1ab/nsp5A-B75L75LctCctT910AY.470.00028
ORF1ab/nsp5A-B75L75LctCctA110AY.470.000031
ORF1ab/nsp5A-B75L75LctCctT1010B0.001278
ORF1ab/nsp5A-B75L75LctCctT1010B.1.1.630.003858
ORF1ab/nsp5A-B75L75LctCctT1010P.1.140.000478
ORF1ab/nsp5A-B75L75LctCctT99AY.1170.000761
ORF1ab/nsp5A-B75L75LctCctT99AY.130.001449
ORF1ab/nsp5A-B75L75LctCctT99B.1.177.820.004296
ORF1ab/nsp5A-B75L75LctCctT99B.1.3690.002567
ORF1ab/nsp5A-B75L75LctCctT99B.1.617.10.001161
ORF1ab/nsp5A-B75L75LctCctT88AY.1210.001083
ORF1ab/nsp5A-B75L75LctCctT88AY.270.000518
ORF1ab/nsp5A-B75L75LctCctT88AY.46.60.000578
ORF1ab/nsp5A-B75L75LctCctT88B.1.1.2840.000859
ORF1ab/nsp5A-B75L75LctCctT77AY.980.000553
ORF1ab/nsp5A-B75L75LctCctT77B.1.1.2940.008861
ORF1ab/nsp5A-B75L75LctCctT77B.1.2340.000924
ORF1ab/nsp5A-B75L75LctCctT66AY.1050.003859
ORF1ab/nsp5A-B75L75LctCctT66AY.39.10.000238
ORF1ab/nsp5A-B75L75LctCctT66AY.460.000624
ORF1ab/nsp5A-B75L75LctCctT66B.1.1390.004399
ORF1ab/nsp5A-B75L75LctCctT66B.1.2320.003224
ORF1ab/nsp5A-B75L75LctCctA56B.1.258.170.00052
ORF1ab/nsp5A-B75L75LctCctT16B.1.258.170.000104
ORF1ab/nsp5A-B75L75LctCctT66B.1.5970.027778
ORF1ab/nsp5A-B75L75LctCctT36B.1.6280.001057
ORF1ab/nsp5A-B75L75LctCctA36B.1.6280.001057
ORF1ab/nsp5A-B75L75LctCctT55AY.740.000578
ORF1ab/nsp5A-B75L75LctCctT55AY.750.00028
ORF1ab/nsp5A-B75L75LctCctT55B.1.1.2220.00102
ORF1ab/nsp5A-B75L75LctCctT55B.1.1.3430.104167
ORF1ab/nsp5A-B75L75LctCctT55B.1.1.370.000964
ORF1ab/nsp5A-B75L75LctCctT55B.1.160.160.004647
ORF1ab/nsp5A-B75L75LctCctT55B.1.177.180.0058
ORF1ab/nsp5A-B75L75LctCctT55B.1.177.320.006748
ORF1ab/nsp5A-B75L75LctCctT55B.1.258.140.004902
ORF1ab/nsp5A-B75L75LctCctT55B.1.466.20.001956
ORF1ab/nsp5A-B75L75LctCctT55B.1.619.10.003207
ORF1ab/nsp5A-B75L75LctCctT45D.20.0003
ORF1ab/nsp5A-B75L75LctCctG15D.20.000075
ORF1ab/nsp5A-B75L75LctCctT55P.1.20.00578
ORF1ab/nsp5A-B75L75LctCctT44AY.1040.007937
ORF1ab/nsp5A-B75L75LctCctT44AY.350.000932
ORF1ab/nsp5A-B75L75LctCctT44AY.680.001095
ORF1ab/nsp5A-B75L75LctCctT44AY.860.00332
ORF1ab/nsp5A-B75L75LctCctT44AY.9.10.000335
ORF1ab/nsp5A-B75L75LctCctT44B.1.1.2410.008282
ORF1ab/nsp5A-B75L75LctCctT44B.1.1.3120.007648
ORF1ab/nsp5A-B75L75LctCctT34B.1.1.330.001263
ORF1ab/nsp5A-B75L75LctCctA14B.1.1.330.000421
ORF1ab/nsp5A-B75L75LctCctT44B.1.1.3480.003185
ORF1ab/nsp5A-B75L75LctCctT44B.1.1.4330.005698
ORF1ab/nsp5A-B75L75LctCctT44B.1.1.5070.034783
ORF1ab/nsp5A-B75L75LctCctT44B.1.1.5250.021858
ORF1ab/nsp5A-B75L75LctCctT44B.1.177.150.002524
ORF1ab/nsp5A-B75L75LctCctT44B.1.177.210.000306
ORF1ab/nsp5A-B75L75LctCctT44B.1.177.570.001124
ORF1ab/nsp5A-B75L75LctCctT44B.1.177.830.005926
ORF1ab/nsp5A-B75L75LctCctT44B.1.221.30.003333
ORF1ab/nsp5A-B75L75LctCctT44B.1.30.010471
ORF1ab/nsp5A-B75L75LctCctT44B.1.351.20.00121
ORF1ab/nsp5A-B75L75LctCctT44B.1.360.000584
ORF1ab/nsp5A-B75L75LctCctT44B.1.4250.011976
ORF1ab/nsp5A-B75L75LctCctT44B.1.438.10.000429
ORF1ab/nsp5A-B75L75LctCctT44B.1.4760.4
ORF1ab/nsp5A-B75L75LctCctT44N.50.007067
ORF1ab/nsp5A-B75L75LctCctT44P.1.150.000929
ORF1ab/nsp5A-B75L75LctCctG230.111111
ORF1ab/nsp5A-B75L75LctCctT130.055556
ORF1ab/nsp5A-B75L75LctCctT33A.270.004967
ORF1ab/nsp5A-B75L75LctCctT33AY.1060.001005
ORF1ab/nsp5A-B75L75LctCctT33AY.1160.00086
ORF1ab/nsp5A-B75L75LctCctT33AY.116.10.000934
ORF1ab/nsp5A-B75L75LctCctT33AY.120.2.10.001495
ORF1ab/nsp5A-B75L75LctCctT33AY.190.003421
ORF1ab/nsp5A-B75L75LctCctT33AY.320.001597
ORF1ab/nsp5A-B75L75LctCctT33AY.340.000291
ORF1ab/nsp5A-B75L75LctCctT33AY.580.002722
ORF1ab/nsp5A-B75L75LctCctT33AY.620.001307
ORF1ab/nsp5A-B75L75LctCctT33AY.660.003209
ORF1ab/nsp5A-B75L75LctCctT33AY.690.00056
ORF1ab/nsp5A-B75L75LctCctT33AY.700.000626
ORF1ab/nsp5A-B75L75LctCctT33B.1.1.440.007229
ORF1ab/nsp5A-B75L75LctCctT33B.1.1.460.0131
ORF1ab/nsp5A-B75L75LctCctT33B.1.1.5060.111111
ORF1ab/nsp5A-B75L75LctCctT33B.1.177.110.005093
ORF1ab/nsp5A-B75L75LctCctT33B.1.214.20.001799
ORF1ab/nsp5A-B75L75LctCctT33B.1.2400.000647
ORF1ab/nsp5A-B75L75LctCctT33B.1.258.110.001189
ORF1ab/nsp5A-B75L75LctCctT33B.1.3110.000824
ORF1ab/nsp5A-B75L75LctCctT33B.1.36.290.001552
ORF1ab/nsp5A-B75L75LctCctT33B.1.3990.005803
ORF1ab/nsp5A-B75L75LctCctT33B.1.4050.037037
ORF1ab/nsp5A-B75L75LctCctT33B.1.4990.003151
ORF1ab/nsp5A-B75L75LctCctT33B.1.5170.001281
ORF1ab/nsp5A-B75L75LctCctT33B.1.5230.007353
ORF1ab/nsp5A-B75L75LctCctT33C.360.002732
ORF1ab/nsp5A-B75L75LctCctT33C.36.30.001702
ORF1ab/nsp5A-B75L75LctCctT33N.40.012766
ORF1ab/nsp5A-B75L75LctCctT33P.1.40.00293
ORF1ab/nsp5A-B75L75LctCctT33Q.40.001364
ORF1ab/nsp5A-B75L75LctCctT33W.30.015789
ORF1ab/nsp5A-B75L75LctCctT22A0.000774
ORF1ab/nsp5A-B75L75LctCctT22AT.10.010256
ORF1ab/nsp5A-B75L75LctCctT22AY.100.00106
ORF1ab/nsp5A-B75L75LctCctT22AY.1070.000932
ORF1ab/nsp5A-B75L75LctCctT22AY.120.10.000642
ORF1ab/nsp5A-B75L75LctCctT22AY.300.000791
ORF1ab/nsp5A-B75L75LctCctT22AY.4.50.000215
ORF1ab/nsp5A-B75L75LctCctT22AY.400.001929
ORF1ab/nsp5A-B75L75LctCctT22AY.670.000929
ORF1ab/nsp5A-B75L75LctCctT22AY.7.10.000225
ORF1ab/nsp5A-B75L75LctCctT22AY.920.000575
ORF1ab/nsp5A-B75L75LctCctT22AY.930.000546
ORF1ab/nsp5A-B75L75LctCctT22B.1.1.1230.035714
ORF1ab/nsp5A-B75L75LctCctT22B.1.1.1570.001826
ORF1ab/nsp5A-B75L75LctCctT22B.1.1.1590.009346
ORF1ab/nsp5A-B75L75LctCctT22B.1.1.1890.003026
ORF1ab/nsp5A-B75L75LctCctT22B.1.1.3160.00185
ORF1ab/nsp5A-B75L75LctCctT22B.1.1.390.001019
ORF1ab/nsp5A-B75L75LctCctT22B.1.1.4170.005405
ORF1ab/nsp5A-B75L75LctCctT22B.1.1.4320.002532
ORF1ab/nsp5A-B75L75LctCctT22B.1.1.500.001358
ORF1ab/nsp5A-B75L75LctCctT22B.1.1.5230.003125
ORF1ab/nsp5A-B75L75LctCctT22B.1.1110.00235
ORF1ab/nsp5A-B75L75LctCctT22B.1.177.600.000437
ORF1ab/nsp5A-B75L75LctCctT22B.1.177.770.001452
ORF1ab/nsp5A-B75L75LctCctA12B.1.177.860.000183
ORF1ab/nsp5A-B75L75LctCctT12B.1.177.860.000183
ORF1ab/nsp5A-B75L75LctCctT22B.1.2650.002541
ORF1ab/nsp5A-B75L75LctCctT22B.1.2790.001027
ORF1ab/nsp5A-B75L75LctCctT22B.1.3360.004878
ORF1ab/nsp5A-B75L75LctCctT22B.1.3460.002621
ORF1ab/nsp5A-B75L75LctCctT22B.1.351.30.001753
ORF1ab/nsp5A-B75L75LctCctT22B.1.36.170.000988
ORF1ab/nsp5A-B75L75LctCctT22B.1.36.240.012346
ORF1ab/nsp5A-B75L75LctCctT22B.1.36.380.003284
ORF1ab/nsp5A-B75L75LctCctT22B.1.36.80.002
ORF1ab/nsp5A-B75L75LctCctT22B.1.4030.006536
ORF1ab/nsp5A-B75L75LctCctT22B.1.4560.006536
ORF1ab/nsp5A-B75L75LctCctT22B.1.4970.00063
ORF1ab/nsp5A-B75L75LctCctT22B.1.5250.000226
ORF1ab/nsp5A-B75L75LctCctT22B.1.5600.009259
ORF1ab/nsp5A-B75L75LctCctT22B.1.5640.000852
ORF1ab/nsp5A-B75L75LctCctT22B.1.5950.000522
ORF1ab/nsp5A-B75L75LctCctT22B.1.6270.00404
ORF1ab/nsp5A-B75L75LctCctT22B.450.007663
ORF1ab/nsp5A-B75L75LctCctT22C.140.008658
ORF1ab/nsp5A-B75L75LctCctT22D.30.011834
ORF1ab/nsp5A-B75L75LctCctT22P.1.10.000635
ORF1ab/nsp5A-B75L75LctCctT22P.1.100.000539
ORF1ab/nsp5A-B75L75LctCctT22P.1.170.000324
ORF1ab/nsp5A-B75L75LctCctT22Q.30.00029
ORF1ab/nsp5A-B75L75LctCctT11A.2.5.10.004808
ORF1ab/nsp5A-B75L75LctCctT11A.23.10.000704
ORF1ab/nsp5A-B75L75LctCctT11AD.20.000219
ORF1ab/nsp5A-B75L75LctCctT11AY.10.000396
ORF1ab/nsp5A-B75L75LctCctT11AY.1010.00049
ORF1ab/nsp5A-B75L75LctCctT11AY.1140.000231
ORF1ab/nsp5A-B75L75LctCctT11AY.160.00038
ORF1ab/nsp5A-B75L75LctCctT11AY.240.000431
ORF1ab/nsp5A-B75L75LctCctT11AY.410.000294
ORF1ab/nsp5A-B75L75LctCctT11AY.46.10.001027
ORF1ab/nsp5A-B75L75LctCctA11AY.480.000465
ORF1ab/nsp5A-B75L75LctCctT11AY.5.30.000337
ORF1ab/nsp5A-B75L75LctCctT11AY.530.000288
ORF1ab/nsp5A-B75L75LctCctT11AY.550.000917
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