CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = L75F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	75	L75F	L3338F	nonsyn	Ctc	Ttc	6751	6737	0.997926	10277-10279
ORF1ab/nsp5A-B	75	L75F	L3338F	nonsyn	CtC	TtT	6751	14	0.00207377	10277-10279

Details of the mutation L75F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	6737	6751	All	0.001289
ORF1ab/nsp5A-B	75	L75F	CtC	TtT	14	6751	All	0.000003
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2800	2809	B.1.1.7	0.002507
ORF1ab/nsp5A-B	75	L75F	CtC	TtT	9	2809	B.1.1.7	0.000008
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	504	504	B.1.526	0.011846
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	460	460	AY.3	0.004575
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	258	258	AY.47	0.008025
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	250	250	AY.4	0.000389
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	204	205	P.1	0.003214
ORF1ab/nsp5A-B	75	L75F	CtC	TtT	1	205	P.1	0.000016
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	191	191	B.1.617.2	0.000719
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	145	145	AY.13	0.023342
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	144	145	B.1	0.001319
ORF1ab/nsp5A-B	75	L75F	CtC	TtT	1	145	B.1	0.000009
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	113	113	B.1.1	0.00205
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	82	82	B.1.429	0.001929
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	74	74	AY.25	0.000445
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	61	61	AY.44	0.000371
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	60	60	AY.103	0.000373
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	46	46	B.1.177.81	0.008709
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	45	45	B.1.2	0.000396
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	45	45	B.1.351	0.001338
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	44	44	B.1.177	0.000579
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	41	41	AY.75	0.002297
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	36	36	B.1.36	0.005252
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	34	34	B.1.1.519	0.00135
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	32	32	AY.43	0.000142
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	31	31	AY.4.2	0.000672
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	30	30	AY.100	0.00138
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	27	27	B.1.258.17	0.002807
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	27	27	B.19	1
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	26	26	AY.34	0.002521
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	24	24	B.1.36.18	0.010084
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	20	20	AY.46.6	0.001444
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	20	20	B.1.243	0.001392
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	18	18	AY.117	0.001521
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	17	18	B.1.160	0.00053
ORF1ab/nsp5A-B	75	L75F	CtC	TtT	1	18	B.1.160	0.000031
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	18	18	B.1.232	0.009672
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	18	18	P.1.17	0.002912
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	17	17	AY.102	0.000451
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	16	16	AY.29	0.000252
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	16	16	B.1.1.284	0.001718
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	16	16	B.1.409	0.0125
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	15	15	AY.20	0.000583
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	15	15	AY.5	0.00031
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	15	15	B.1.1.374	0.035629
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	15	15	B.1.221.4	0.0625
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	14	14	B.1.221	0.000994
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	14	14	B.1.474	0.026616
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	13	13	AY.26	0.000368
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	13	13	AY.9.2	0.000477
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	13	13	P.1.14	0.000621
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	12	12	B.1.177.29	0.8
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	12	12	B.1.351.5	0.007194
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	12	12	B.39	0.027972
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	12	12	Q.8	0.001979
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	11	11	A.23.1	0.007746
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	11	11	B.1.1.263	0.017134
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	11	11	B.1.258	0.000732
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	10	10	AY.99.2	0.000922
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	10	10	B.1.1.396	0.454545
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	9	9	B.1.177.60	0.001966
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	9	9	B.1.427	0.000454
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	9	9	B.1.596	0.000784
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	8	8	AY.23	0.000558
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	8	8	B.1.214.2	0.004796
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	8	8	C.37	0.000929
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	7	7	AY.114	0.001618
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	7	7	AY.39	0.000173
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	7	7	AY.46	0.000729
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	7	7	AY.54	0.000667
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	7	7	AY.98	0.000553
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	7	7	B.1.311	0.001922
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	7	7	B.1.397	0.033981
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	7	7	B.1.470	0.009831
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	7	7	P.1.12	0.003388
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	7	7	P.2	0.001306
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	6	6	A.2	0.003971
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	6	6	AY.75.1	0.001082
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	6	6	B.1.177.52	0.010545
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	6	6	C.31	0.107143
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	6	6	P.1.15	0.001394
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	A.2.5.1	0.024038
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	AE.8	0.002445
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	AY.33	0.000334
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	AY.46.2	0.003177
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	AY.9	0.000338
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	AY.98.1	0.000242
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	B.1.1.1	0.001633
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	B.1.177.62	0.005959
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	B.1.177.86	0.000917
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	B.1.234	0.00066
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	B.1.466.2	0.001956
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	5	5	B.1.509	0.004329
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	4		0.166667
ORF1ab/nsp5A-B	75	L75F	CtC	TtT	1	4		0.055556
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	4	4	A	0.001548
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	4	4	AY.119	0.000141
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	4	4	B.1.1.214	0.000222
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	4	4	B.1.1.409	0.011331
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	4	4	B.1.1.70	0.001364
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	4	4	B.1.189	0.017167
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	4	4	B.1.240	0.000862
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	4	4	B.1.293	0.05
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	4	4	D.2	0.0003
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	4	4	P.1.1	0.001271
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	AY.120	0.000112
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	AY.16	0.001139
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	AY.36	0.000445
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	AY.7	0.000588
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	AY.74	0.000347
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	AY.85	0.001282
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.1.189	0.004539
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.1.216	0.002671
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.1.265	0.009464
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.1.37	0.000579
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.1.434	0.001046
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.177.63	0.008108
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.177.75	0.003122
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.396	0.002117
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.497	0.000944
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.564	0.001278
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.595	0.000783
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.628	0.001057
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	B.1.631	0.010101
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	3	C.35	0.001548
ORF1ab/nsp5A-B	75	L75F	CtC	TtT	1	3	C.35	0.000774
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	C.36.3	0.001702
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	P.1.2	0.003468
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	3	3	Q.1	0.000379
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	A.2.5	0.000998
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.113	0.000285
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.118	0.000125
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.27	0.000129
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.3.1	0.000171
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.4.3	0.001684
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.4.4	0.000818
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.4.5	0.000215
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.42	0.00008
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.46.4	0.000329
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.61	0.00021
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.65	0.001066
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.69	0.000373
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.84	0.000875
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	AY.87	0.001665
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.1.176	0.000879
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.1.192	0.004619
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.1.220	0.003717
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.1.25	0.001137
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.1.28	0.000622
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.1.354	0.008772
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.1.416	0.00181
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.1.50	0.001358
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.1.63	0.000772
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.110.3	0.001437
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.131	0.017544
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.160.16	0.001859
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.177.6	0.001953
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.206	0.001631
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.36.29	0.001035
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.362	0.003082
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.428	0.002041
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.453	0.006472
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.525	0.000226
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.617.1	0.000258
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.619.1	0.001283
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.620	0.001892
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.1.637	0.000146
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	B.40	0.000729
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	C.1	0.004785
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	C.30	0.003454
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	2	2	P.1.16	0.000748
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	A.1	0.000282
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	A.19	0.009434
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	A.21	0.00277
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AD.2	0.000219
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AU.2	0.002421
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.105	0.000643
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.110	0.000113
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.111	0.000183
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.116	0.000287
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.116.1	0.000311
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.121	0.000135
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.16.1	0.00047
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.30	0.000396
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.39.1	0.00004
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.45	0.000122
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.5.4	0.000277
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.50	0.000799
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.53	0.000288
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.6	0.000041
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.67	0.000464
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.68	0.000274
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.7.1	0.000113
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.70	0.000209
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.71	0.000475
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.88	0.000884
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	AY.92	0.000287
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B	0.000128
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.117	0.009709
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.121	0.002427
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.128	0.007092
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.157	0.000913
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.209	0.008929
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.230	0.009174
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.243	0.004082
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.272	0.005208
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.280	0.003086
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.299	0.012195
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.311	0.000358
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.385	0.004464
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.39	0.00051
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.404	0.015873
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.407	0.041667
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.413	0.006897
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.420	0.001006
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.432	0.001266
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.442	0.018519
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.464	0.001473
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.1.523	0.001563
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.160.14	0.002119
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.17	0.000821
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.21	0.000076
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.3	0.007634
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.39	0.015385
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.44	0.000519
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.45	0.000381
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.50	0.004695
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.73	0.000566
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.77	0.000726
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.177.8	0.000752
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.210	0.002132
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.22	0.001318
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.223	0.002778
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.237	0.004975
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.260	0.003344
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.340	0.004292
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.351.3	0.000876
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.36.19	0.009259
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.36.39	0.002217
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.36.8	0.001
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.361	0.001289
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.367	0.000792
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.369	0.000285
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.372	0.010989
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.393	0.028571
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.400.1	0.015152
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.413	0.004255
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.415.1	0.007576
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.416.1	0.001563
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.452	0.013699
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.575.1	0.002439
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.600	0.005848
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.609	0.000479
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.619	0.000871
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.623	0.000536
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.1.625	0.002353
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.10	0.008264
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.37	0.028571
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	B.61	0.005747
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	C.36	0.000911
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	P.1.10	0.000269
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	P.1.4	0.000977
ORF1ab/nsp5A-B	75	L75F	Ctc	Ttc	1	1	P.7	0.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.