CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = L58L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	58	L58L	L3321L	syn	ctC	ctT	7104	7042	0.991273	10226-10228
ORF1ab/nsp5A-B	58	L58L	L3321L	syn	ctC	ctA	7104	59	0.00830518	10226-10228
ORF1ab/nsp5A-B	58	L58L	L3321L	syn	ctC	ctG	7104	3	0.000422297	10226-10228

Details of the mutation L58L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	7042	7104	All	0.001347
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	59	7104	All	0.000011
ORF1ab/nsp5A-B	58	L58L	ctC	ctG	3	7104	All	0.000001
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1478	1481	B.1.1.7	0.001323
ORF1ab/nsp5A-B	58	L58L	ctC	ctG	3	1481	B.1.1.7	0.000003
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1351	1352	AY.4	0.002103
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	1352	AY.4	0.000002
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	469	469	B.1.587	0.889943
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	411	411	B.1.160	0.012818
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	200	200	B.1.177	0.002634
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	190	193	B.1.617.2	0.000715
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	3	193	B.1.617.2	0.000011
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	159	163	B.1.2	0.0014
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	4	163	B.1.2	0.000035
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	142	142	AY.25	0.000854
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	141	141	AY.26	0.003992
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	132	133	AY.103	0.00082
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	133	AY.103	0.000006
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	116	133	AY.43	0.000514
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	17	133	AY.43	0.000075
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	99	99	AY.4.2	0.002147
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	97	98	B.1.1	0.00176
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	98	B.1.1	0.000018
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	95	95	AY.3	0.000945
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	92	94	B.1	0.000843
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	2	94	B.1	0.000018
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	79	79	B.1.1.432	0.1
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	79	79	P.1	0.001245
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	78	78	AY.44	0.000475
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	69	69	B.1.177.60	0.015072
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	51	51	B.1.1.318	0.015389
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	51	51	B.1.177.21	0.0039
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	46	46	B.1.526	0.001081
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	43	43	AY.102	0.00114
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	43	43	B.1.429	0.001012
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	42	42	B.1.1.240	0.197183
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	41	41	AY.29	0.000647
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	38	38	AY.20	0.001477
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	36	37	AY.39	0.00089
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	37	AY.39	0.000025
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	31	31	B.1.1.219	0.155
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	29	29	B.1.1.435	1
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	29	29	B.1.351	0.000862
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	29	29	B.1.416	0.036802
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	27	27	B.1.240	0.00582
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	25	25	B.1.177.81	0.004733
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	24	24	B.1.609	0.011505
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	23	23	B.1.36.17	0.011364
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	22	22	B.1.438.1	0.00236
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	22	22	B.1.621	0.001947
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	19	19	AY.121	0.002571
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	18	18	AY.33	0.001202
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	18	18	AY.9.2	0.000661
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	18	18	B.1.596	0.001568
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	16	17	AY.119	0.000565
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	17	AY.119	0.000035
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	17	17	AY.42	0.000684
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	17	17	AY.47	0.000529
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	17	17	B.1.1.519	0.000675
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	15	15	AY.39.1	0.000594
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	15	15	AY.5	0.00031
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	15	15	P.1.14	0.000717
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	14	14	AY.23	0.000976
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	13	13	AY.35	0.00303
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	13	13	AY.85	0.005553
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	13	13	B.1.221	0.000923
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	12	12	AY.120	0.000446
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	12	12	B.1.177.75	0.012487
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	12	12	B.1.214.2	0.007194
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	12	12	B.1.375	0.009836
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	12	12	Q.1	0.001516
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	11	11	AY.34	0.001067
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	11	11	AY.46	0.001145
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	11	11	AY.9	0.000744
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	11	11	B.1.565	0.008914
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	10	10	AY.4.4	0.004092
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	9	10	C.37	0.001045
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	10	C.37	0.000116
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	9	9	AY.9.1	0.000754
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	9	9	AY.99.2	0.000829
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	8	8	AY.118	0.000501
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	8	8	AY.32	0.00426
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	8	8	AY.46.6	0.000578
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	8	8	AY.51	0.007273
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	8	8	B.1.1.225	0.057554
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	8	8	B.1.177.65	0.005323
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	8	8	B.1.311	0.002197
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	7	7	A	0.002709
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	7	7	A.3	0.014675
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	7	7	AY.106	0.002344
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	6	7	AY.45	0.00073
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	7	AY.45	0.000122
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	7	7	AY.6	0.000288
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	7	7	B.1.1.486	0.011041
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	7	7	B.1.234	0.000924
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	6	6	AY.3.1	0.000512
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	6	6	AY.98	0.000474
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	6	6	AZ.1	0.005204
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	6	6	B.1.243	0.000418
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	6	B.1.351.2	0.001513
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	6	B.1.351.2	0.000303
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	6	6	B.1.427	0.000303
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	6	6	B.1.525	0.000679
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	6	B.1.637	0.000219
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	3	6	B.1.637	0.000219
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	6	6	C.36.3	0.003403
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	6	6	D.2	0.00045
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	6	6	P.1.10	0.001617
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	AY.100	0.00023
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	AY.54	0.000477
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	AY.75	0.00028
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	5	5	AY.8	0.00303
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	B.1.1.306	0.002192
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	B.1.1.317	0.002058
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	B.1.177.15	0.003155
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	B.1.241	0.004058
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	B.1.36	0.00073
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	B.1.595	0.001305
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	B.1.619.1	0.003207
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	5	5	Q.8	0.000825
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	AY.113	0.00057
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	AY.116	0.001147
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	AY.13	0.000644
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	AY.46.2	0.002541
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	AY.62	0.001743
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	AY.91	0.002922
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	B.1.1.277	0.003035
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	B.1.1.50	0.002716
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	B.1.177.19	0.005722
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	4	4	B.1.258.11	0.001585
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	B.1.265	0.005083
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	B.1.36.1	0.004561
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	B.1.517	0.001708
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	B.1.551	0.005161
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	B.1.561	0.001588
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	B.1.568	0.004444
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	4	4	R.1	0.00036
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	A.21	0.00831
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	AY.117	0.000254
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	AY.14	0.000264
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	2	3	AY.36	0.000296
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	3	AY.36	0.000148
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	AY.37	0.000948
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	AY.4.2.1	0.000447
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	AY.59	0.001589
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	AY.61	0.000314
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	AY.79	0.003632
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.1.170	0.003741
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.1.263	0.004673
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.1.27	0.016949
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.1.372	0.002066
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.1.47	0.016043
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.1.63	0.001157
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.110.3	0.002155
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.177.16	0.001993
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.177.50	0.014085
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.177.7	0.000495
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.232	0.001612
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.258	0.0002
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.36.29	0.001552
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.369	0.000856
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.397	0.014563
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.406	0.018182
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.478	0.035294
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.617.1	0.000387
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	B.1.627	0.006061
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	P.1.15	0.000697
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	3	3	P.1.17	0.000485
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	AY.105	0.001286
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	AY.114	0.000462
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	AY.12	0.000632
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	AY.120.2	0.002571
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	AY.24	0.000862
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	AY.27	0.000129
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	AY.34.1	0.00102
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	AY.38	0.000999
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	AY.64	0.00119
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	2	AY.84	0.000437
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	2	AY.84	0.000437
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B	0.000256
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.1.1	0.000653
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.1.244	0.030769
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.1.33	0.000842
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.1.351	0.005587
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.1.467	0.038462
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.169	0.029851
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.177.41	0.005
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.177.43	0.002954
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.177.73	0.001133
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.320	0.002491
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.36.8	0.002
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.362	0.003082
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.389	0.002004
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.423	0.020408
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.453	0.006472
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.567	0.006667
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.576	0.001813
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.623	0.001073
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.1.81	0.042553
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	B.11	0.010256
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	C.14	0.008658
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	2	C.16	0.00106
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	2	C.16	0.00106
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	C.36	0.001821
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	P.1.7	0.000639
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	P.2	0.000373
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	Q.2	0.001227
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	Q.3	0.00029
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	2	2	Q.4	0.00091
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1		0.055556
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	A.1	0.000282
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	A.2.5	0.000499
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AV.1	0.005051
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.10	0.00053
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.101	0.00049
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.108	0.001103
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.109	0.00074
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.110	0.000113
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.111	0.000183
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.16	0.00038
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.16.1	0.00047
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.19	0.00114
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.2	0.000356
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.21	0.001898
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.29.1	0.000221
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.4.1	0.000737
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.4.5	0.000107
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.46.1	0.001027
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.46.4	0.000165
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.46.5	0.000198
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.5.4	0.000277
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.58	0.000907
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.65	0.000533
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.69	0.000187
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.7	0.000196
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.71	0.000475
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.74	0.000116
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.75.1	0.00018
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AY.99	0.001049
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	AZ.5	0.003509
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.125	0.010204
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.141	0.002012
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.161	0.003534
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.207	0.001182
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.214	0.000055
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.216	0.00089
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.229	0.005747
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.241	0.00207
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.243	0.004082
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.284	0.000107
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.311	0.000358
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.348	0.000796
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.37	0.000193
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.389	0.006061
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.39	0.00051
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.398	0.003226
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.434	0.000349
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.464	0.001473
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.487	0.005587
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.521	0.005348
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.1.56	0.017857
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.110	0.004525
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.111	0.001175
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.177.26	0.006993
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.177.44	0.000519
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.177.9	0.001332
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.206	0.000816
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.243.1	0.022222
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.258.17	0.000104
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.279	0.000514
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.346	0.001311
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.349	0.000715
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.36.18	0.00042
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.367	0.000792
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.398	0.002976
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.400.1	0.015152
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.402	0.009804
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.437	0.020833
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.456	0.003268
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.471	0.002732
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.497	0.000315
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.500	0.052632
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.521	0.004975
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.527	0.003704
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.537	0.02
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.564	0.000426
ORF1ab/nsp5A-B	58	L58L	ctC	ctA	1	1	B.1.573	0.006098
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.575	0.000303
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.577	0.000687
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.582	0.000491
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.596.1	0.009346
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.1.76	0.011364
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.40	0.000364
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.6	0.00091
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.6.6	0.000889
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	B.61	0.005747
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	C.1	0.002392
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	C.13	0.025641
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	N.5	0.001767
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	N.9	0.005952
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	P.1.12	0.000484
ORF1ab/nsp5A-B	58	L58L	ctC	ctT	1	1	W.1	0.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.