CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 58 | L58L | L3321L | syn | ctC | ctT | 7104 | 7042 | 0.991273 | 10226-10228 |
ORF1ab/nsp5A-B | 58 | L58L | L3321L | syn | ctC | ctA | 7104 | 59 | 0.00830518 | 10226-10228 |
ORF1ab/nsp5A-B | 58 | L58L | L3321L | syn | ctC | ctG | 7104 | 3 | 0.000422297 | 10226-10228 |
Details of the mutation L58L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 7042 | 7104 | All | 0.001347 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 59 | 7104 | All | 0.000011 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctG | 3 | 7104 | All | 0.000001 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1478 | 1481 | B.1.1.7 | 0.001323 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctG | 3 | 1481 | B.1.1.7 | 0.000003 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1351 | 1352 | AY.4 | 0.002103 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 1352 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 469 | 469 | B.1.587 | 0.889943 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 411 | 411 | B.1.160 | 0.012818 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 200 | 200 | B.1.177 | 0.002634 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 190 | 193 | B.1.617.2 | 0.000715 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 3 | 193 | B.1.617.2 | 0.000011 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 159 | 163 | B.1.2 | 0.0014 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 4 | 163 | B.1.2 | 0.000035 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 142 | 142 | AY.25 | 0.000854 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 141 | 141 | AY.26 | 0.003992 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 132 | 133 | AY.103 | 0.00082 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 133 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 116 | 133 | AY.43 | 0.000514 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 17 | 133 | AY.43 | 0.000075 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 99 | 99 | AY.4.2 | 0.002147 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 97 | 98 | B.1.1 | 0.00176 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 98 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 95 | 95 | AY.3 | 0.000945 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 92 | 94 | B.1 | 0.000843 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 2 | 94 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 79 | 79 | B.1.1.432 | 0.1 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 79 | 79 | P.1 | 0.001245 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 78 | 78 | AY.44 | 0.000475 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 69 | 69 | B.1.177.60 | 0.015072 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 51 | 51 | B.1.1.318 | 0.015389 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 51 | 51 | B.1.177.21 | 0.0039 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 46 | 46 | B.1.526 | 0.001081 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 43 | 43 | AY.102 | 0.00114 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 43 | 43 | B.1.429 | 0.001012 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 42 | 42 | B.1.1.240 | 0.197183 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 41 | 41 | AY.29 | 0.000647 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 38 | 38 | AY.20 | 0.001477 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 36 | 37 | AY.39 | 0.00089 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 37 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 31 | 31 | B.1.1.219 | 0.155 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 29 | 29 | B.1.1.435 | 1 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 29 | 29 | B.1.351 | 0.000862 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 29 | 29 | B.1.416 | 0.036802 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 27 | 27 | B.1.240 | 0.00582 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 25 | 25 | B.1.177.81 | 0.004733 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 24 | 24 | B.1.609 | 0.011505 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 23 | 23 | B.1.36.17 | 0.011364 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 22 | 22 | B.1.438.1 | 0.00236 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 22 | 22 | B.1.621 | 0.001947 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 19 | 19 | AY.121 | 0.002571 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 18 | 18 | AY.33 | 0.001202 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 18 | 18 | AY.9.2 | 0.000661 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 18 | 18 | B.1.596 | 0.001568 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 16 | 17 | AY.119 | 0.000565 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 17 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 17 | 17 | AY.42 | 0.000684 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 17 | 17 | AY.47 | 0.000529 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 17 | 17 | B.1.1.519 | 0.000675 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 15 | 15 | AY.39.1 | 0.000594 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 15 | 15 | P.1.14 | 0.000717 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 14 | 14 | AY.23 | 0.000976 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 13 | 13 | AY.35 | 0.00303 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 13 | 13 | AY.85 | 0.005553 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 13 | 13 | B.1.221 | 0.000923 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 12 | 12 | B.1.177.75 | 0.012487 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 12 | 12 | B.1.214.2 | 0.007194 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 12 | 12 | B.1.375 | 0.009836 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 12 | 12 | Q.1 | 0.001516 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 11 | 11 | AY.34 | 0.001067 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 11 | 11 | AY.46 | 0.001145 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 11 | 11 | AY.9 | 0.000744 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 11 | 11 | B.1.565 | 0.008914 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 10 | 10 | AY.4.4 | 0.004092 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 9 | 10 | C.37 | 0.001045 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 10 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 9 | 9 | AY.9.1 | 0.000754 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 8 | 8 | AY.32 | 0.00426 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 8 | 8 | AY.51 | 0.007273 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 8 | 8 | B.1.1.225 | 0.057554 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 8 | 8 | B.1.177.65 | 0.005323 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 7 | 7 | A | 0.002709 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 7 | 7 | A.3 | 0.014675 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 6 | 7 | AY.45 | 0.00073 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 7 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 7 | 7 | B.1.1.486 | 0.011041 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 6 | 6 | AZ.1 | 0.005204 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 6 | B.1.351.2 | 0.001513 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 6 | B.1.351.2 | 0.000303 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 6 | B.1.637 | 0.000219 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 3 | 6 | B.1.637 | 0.000219 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 6 | 6 | P.1.10 | 0.001617 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 5 | 5 | AY.8 | 0.00303 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | B.1.177.15 | 0.003155 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | B.1.619.1 | 0.003207 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | AY.46.2 | 0.002541 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | B.1.1.277 | 0.003035 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | B.1.177.19 | 0.005722 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 4 | 4 | B.1.258.11 | 0.001585 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | B.1.36.1 | 0.004561 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | B.1.517 | 0.001708 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | B.1.551 | 0.005161 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | B.1.568 | 0.004444 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | A.21 | 0.00831 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 2 | 3 | AY.36 | 0.000296 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 3 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.1.27 | 0.016949 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.1.47 | 0.016043 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.177.16 | 0.001993 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.177.50 | 0.014085 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.397 | 0.014563 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.406 | 0.018182 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.478 | 0.035294 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.1.244 | 0.030769 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.1.467 | 0.038462 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.169 | 0.029851 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.177.41 | 0.005 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.423 | 0.020408 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.453 | 0.006472 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.567 | 0.006667 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.1.81 | 0.042553 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | B.11 | 0.010256 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 2 | C.16 | 0.00106 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 2 | C.16 | 0.00106 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.177.26 | 0.006993 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.437 | 0.020833 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.500 | 0.052632 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctA | 1 | 1 | B.1.573 | 0.006098 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.1.76 | 0.011364 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | C.13 | 0.025641 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 58 | L58L | ctC | ctT | 1 | 1 | W.1 | 0.008696 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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