CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = G71del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B71G71del1G3334del1delGgt-gt750.71428610265-10267
ORF1ab/nsp5A-B71G71del1G3334del1delgGTgA-710.14285710265-10267
ORF1ab/nsp5A-B71G71del1G3334del1delggTgg-710.14285710265-10267

Details of the mutation G71del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B71G71del1Ggt-gt57All0.000001
ORF1ab/nsp5A-B71G71del1gGTgA-17All0
ORF1ab/nsp5A-B71G71del1ggTgg-17All0
ORF1ab/nsp5A-B71G71del1Ggt-gt11AY.40.000002
ORF1ab/nsp5A-B71G71del1ggTgg-11B.10.000009
ORF1ab/nsp5A-B71G71del1gGTgA-11B.1.10.000018
ORF1ab/nsp5A-B71G71del1Ggt-gt11B.1.20.000009
ORF1ab/nsp5A-B71G71del1Ggt-gt11B.1.36.290.000517
ORF1ab/nsp5A-B71G71del1Ggt-gt11B.1.5960.000087
ORF1ab/nsp5A-B71G71del1Ggt-gt11D.20.000075