CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = D187D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B187D187DD3450DsyngaCgaT89028902110613-10615

Details of the mutation D187D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B187D187DgaCgaT89028902All0.001703
ORF1ab/nsp5A-B187D187DgaCgaT27232723B.1.177.210.208228
ORF1ab/nsp5A-B187D187DgaCgaT12981298B.1.1.70.001162
ORF1ab/nsp5A-B187D187DgaCgaT11151115B.1.351.30.977213
ORF1ab/nsp5A-B187D187DgaCgaT703703B.1.1.2790.788117
ORF1ab/nsp5A-B187D187DgaCgaT509509P.1.60.990272
ORF1ab/nsp5A-B187D187DgaCgaT250250AY.40.000389
ORF1ab/nsp5A-B187D187DgaCgaT234234AY.1030.001453
ORF1ab/nsp5A-B187D187DgaCgaT205205B.1.617.20.000772
ORF1ab/nsp5A-B187D187DgaCgaT172172AY.250.001035
ORF1ab/nsp5A-B187D187DgaCgaT157157AY.470.004884
ORF1ab/nsp5A-B187D187DgaCgaT114114AY.430.000505
ORF1ab/nsp5A-B187D187DgaCgaT8181B.1.1770.001067
ORF1ab/nsp5A-B187D187DgaCgaT7676B.1.20.000669
ORF1ab/nsp5A-B187D187DgaCgaT6969AY.1190.002436
ORF1ab/nsp5A-B187D187DgaCgaT5757AY.1200.002119
ORF1ab/nsp5A-B187D187DgaCgaT5555B.1.5260.001293
ORF1ab/nsp5A-B187D187DgaCgaT5454B.1.3510.001605
ORF1ab/nsp5A-B187D187DgaCgaT4848AY.1210.006495
ORF1ab/nsp5A-B187D187DgaCgaT4848AY.440.000292
ORF1ab/nsp5A-B187D187DgaCgaT4343B.10.000394
ORF1ab/nsp5A-B187D187DgaCgaT4343B.1.351.20.013011
ORF1ab/nsp5A-B187D187DgaCgaT4242AY.50.000867
ORF1ab/nsp5A-B187D187DgaCgaT3737B.1.10.000671
ORF1ab/nsp5A-B187D187DgaCgaT3232AY.750.001793
ORF1ab/nsp5A-B187D187DgaCgaT3030AY.610.003143
ORF1ab/nsp5A-B187D187DgaCgaT2929P.10.000457
ORF1ab/nsp5A-B187D187DgaCgaT2424AY.30.000239
ORF1ab/nsp5A-B187D187DgaCgaT2323B.1.5760.020852
ORF1ab/nsp5A-B187D187DgaCgaT2020B.1.1.630.007716
ORF1ab/nsp5A-B187D187DgaCgaT2020B.1.617.10.002579
ORF1ab/nsp5A-B187D187DgaCgaT1919AY.390.00047
ORF1ab/nsp5A-B187D187DgaCgaT1818AY.1000.000828
ORF1ab/nsp5A-B187D187DgaCgaT1818AY.340.001745
ORF1ab/nsp5A-B187D187DgaCgaT1717B.1.2400.003665
ORF1ab/nsp5A-B187D187DgaCgaT1616AY.46.50.003175
ORF1ab/nsp5A-B187D187DgaCgaT1616B.1.2340.002111
ORF1ab/nsp5A-B187D187DgaCgaT1515B.1.1600.000468
ORF1ab/nsp5A-B187D187DgaCgaT1515B.1.2210.001065
ORF1ab/nsp5A-B187D187DgaCgaT1414B.1.1.5190.000556
ORF1ab/nsp5A-B187D187DgaCgaT1313AY.200.000505
ORF1ab/nsp5A-B187D187DgaCgaT1313B.1.1.3970.029279
ORF1ab/nsp5A-B187D187DgaCgaT1313B.1.36.80.013
ORF1ab/nsp5A-B187D187DgaCgaT1212AY.290.000189
ORF1ab/nsp5A-B187D187DgaCgaT1212B.1.1.2650.037855
ORF1ab/nsp5A-B187D187DgaCgaT99AY.98.10.000436
ORF1ab/nsp5A-B187D187DgaCgaT88AY.1020.000212
ORF1ab/nsp5A-B187D187DgaCgaT88AY.1100.000902
ORF1ab/nsp5A-B187D187DgaCgaT88B.1.36.310.014011
ORF1ab/nsp5A-B187D187DgaCgaT88B.1.4290.000188
ORF1ab/nsp5A-B187D187DgaCgaT88B.1.5610.003176
ORF1ab/nsp5A-B187D187DgaCgaT88B.1.5960.000697
ORF1ab/nsp5A-B187D187DgaCgaT77AY.3.10.000597
ORF1ab/nsp5A-B187D187DgaCgaT77AY.39.10.000277
ORF1ab/nsp5A-B187D187DgaCgaT77AY.9.20.000257
ORF1ab/nsp5A-B187D187DgaCgaT77B.1.6210.00062
ORF1ab/nsp5A-B187D187DgaCgaT66B0.000767
ORF1ab/nsp5A-B187D187DgaCgaT66B.1.1.2220.001224
ORF1ab/nsp5A-B187D187DgaCgaT66B.1.1.2940.007595
ORF1ab/nsp5A-B187D187DgaCgaT66B.1.1.3440.064516
ORF1ab/nsp5A-B187D187DgaCgaT66B.1.438.10.000644
ORF1ab/nsp5A-B187D187DgaCgaT66B.600.095238
ORF1ab/nsp5A-B187D187DgaCgaT55AY.230.000349
ORF1ab/nsp5A-B187D187DgaCgaT55AY.460.00052
ORF1ab/nsp5A-B187D187DgaCgaT55AY.690.000933
ORF1ab/nsp5A-B187D187DgaCgaT55B.1.1.3490.051546
ORF1ab/nsp5A-B187D187DgaCgaT55B.1.429.10.060241
ORF1ab/nsp5A-B187D187DgaCgaT44AY.700.000834
ORF1ab/nsp5A-B187D187DgaCgaT44AY.710.0019
ORF1ab/nsp5A-B187D187DgaCgaT44B.1.1.280.001245
ORF1ab/nsp5A-B187D187DgaCgaT44B.1.177.730.002265
ORF1ab/nsp5A-B187D187DgaCgaT44B.1.2430.000278
ORF1ab/nsp5A-B187D187DgaCgaT44B.1.360.000584
ORF1ab/nsp5A-B187D187DgaCgaT44B.1.36.290.002069
ORF1ab/nsp5A-B187D187DgaCgaT44B.1.4000.001716
ORF1ab/nsp5A-B187D187DgaCgaT44B.1.564.10.006309
ORF1ab/nsp5A-B187D187DgaCgaT44C.300.006908
ORF1ab/nsp5A-B187D187DgaCgaT44C.370.000464
ORF1ab/nsp5A-B187D187DgaCgaT33AY.1170.000254
ORF1ab/nsp5A-B187D187DgaCgaT33AY.140.000264
ORF1ab/nsp5A-B187D187DgaCgaT33AY.260.000085
ORF1ab/nsp5A-B187D187DgaCgaT33AY.360.000445
ORF1ab/nsp5A-B187D187DgaCgaT33AY.4.20.000065
ORF1ab/nsp5A-B187D187DgaCgaT33AY.46.60.000217
ORF1ab/nsp5A-B187D187DgaCgaT33AY.830.005172
ORF1ab/nsp5A-B187D187DgaCgaT33AY.90.000203
ORF1ab/nsp5A-B187D187DgaCgaT33AY.920.000862
ORF1ab/nsp5A-B187D187DgaCgaT33B.1.1.3180.000905
ORF1ab/nsp5A-B187D187DgaCgaT33B.1.1.3480.002389
ORF1ab/nsp5A-B187D187DgaCgaT33B.1.1.4820.069767
ORF1ab/nsp5A-B187D187DgaCgaT33B.1.177.520.005272
ORF1ab/nsp5A-B187D187DgaCgaT33B.1.177.70.000495
ORF1ab/nsp5A-B187D187DgaCgaT33B.60.00273
ORF1ab/nsp5A-B187D187DgaCgaT33D.20.000225
ORF1ab/nsp5A-B187D187DgaCgaT22A0.000774
ORF1ab/nsp5A-B187D187DgaCgaT22AY.1180.000125
ORF1ab/nsp5A-B187D187DgaCgaT22AY.300.000791
ORF1ab/nsp5A-B187D187DgaCgaT22AY.330.000134
ORF1ab/nsp5A-B187D187DgaCgaT22AY.34.10.00102
ORF1ab/nsp5A-B187D187DgaCgaT22AY.4.10.001475
ORF1ab/nsp5A-B187D187DgaCgaT22AY.420.00008
ORF1ab/nsp5A-B187D187DgaCgaT22AY.60.000082
ORF1ab/nsp5A-B187D187DgaCgaT22AY.80.001212
ORF1ab/nsp5A-B187D187DgaCgaT22AY.850.000854
ORF1ab/nsp5A-B187D187DgaCgaT22AY.9.10.000167
ORF1ab/nsp5A-B187D187DgaCgaT22AY.99.20.000184
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.1.3170.000823
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.1.3330.002153
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.1.500.001358
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.1.700.000682
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.160.250.022222
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.1620.01005
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.177.580.002663
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.2060.001631
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.2360.004107
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.4090.001563
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.4560.006536
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.4970.00063
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.5250.000226
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.5820.000981
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.5950.000522
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.6190.001742
ORF1ab/nsp5A-B187D187DgaCgaT22B.1.6370.000146
ORF1ab/nsp5A-B187D187DgaCgaT22P.1.140.000096
ORF1ab/nsp5A-B187D187DgaCgaT22P.20.000373
ORF1ab/nsp5A-B187D187DgaCgaT22P.40.007605
ORF1ab/nsp5A-B187D187DgaCgaT11A.2.5.10.004808
ORF1ab/nsp5A-B187D187DgaCgaT11AY.10.000396
ORF1ab/nsp5A-B187D187DgaCgaT11AY.100.00053
ORF1ab/nsp5A-B187D187DgaCgaT11AY.1050.000643
ORF1ab/nsp5A-B187D187DgaCgaT11AY.1070.000466
ORF1ab/nsp5A-B187D187DgaCgaT11AY.1130.000142
ORF1ab/nsp5A-B187D187DgaCgaT11AY.116.10.000311
ORF1ab/nsp5A-B187D187DgaCgaT11AY.130.000161
ORF1ab/nsp5A-B187D187DgaCgaT11AY.160.00038
ORF1ab/nsp5A-B187D187DgaCgaT11AY.320.000532
ORF1ab/nsp5A-B187D187DgaCgaT11AY.39.1.10.000725
ORF1ab/nsp5A-B187D187DgaCgaT11AY.4.2.10.000149
ORF1ab/nsp5A-B187D187DgaCgaT11AY.4.50.000107
ORF1ab/nsp5A-B187D187DgaCgaT11AY.46.30.000934
ORF1ab/nsp5A-B187D187DgaCgaT11AY.5.40.000277
ORF1ab/nsp5A-B187D187DgaCgaT11AY.510.000909
ORF1ab/nsp5A-B187D187DgaCgaT11AY.540.000095
ORF1ab/nsp5A-B187D187DgaCgaT11AY.650.000533
ORF1ab/nsp5A-B187D187DgaCgaT11AY.680.000274
ORF1ab/nsp5A-B187D187DgaCgaT11AY.70.000196
ORF1ab/nsp5A-B187D187DgaCgaT11AY.730.000665
ORF1ab/nsp5A-B187D187DgaCgaT11AY.960.002075
ORF1ab/nsp5A-B187D187DgaCgaT11AY.980.000079
ORF1ab/nsp5A-B187D187DgaCgaT11AY.990.001049
ORF1ab/nsp5A-B187D187DgaCgaT11AZ.20.000821
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.1410.002012
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.1610.003534
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.2140.000055
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.2310.003096
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.260.005236
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.2730.006757
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.2880.001916
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.2900.018182
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.3080.011765
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.4160.000905
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.4330.001425
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.4360.025641
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1.5230.001563
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.110.30.000718
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.130.002375
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.1390.000733
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.177.120.000152
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.177.40.000211
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.177.460.000918
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.177.50.001242
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.177.60.000977
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.177.600.000218
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.177.860.000183
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.214.40.009091
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.2370.004975
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.2580.000067
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.2790.000514
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.2840.013158
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.3430.020833
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.3490.000715
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.36.190.009259
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.36.220.001208
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.4200.010417
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.4270.00005
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.4620.007246
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.4700.001404
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.4990.00105
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.5050.004386
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.5270.003704
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.5480.035714
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.5540.004405
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.5750.000303
ORF1ab/nsp5A-B187D187DgaCgaT11B.1.6200.000946
ORF1ab/nsp5A-B187D187DgaCgaT11C.360.000911
ORF1ab/nsp5A-B187D187DgaCgaT11C.37.10.002618
ORF1ab/nsp5A-B187D187DgaCgaT11N.40.004255
ORF1ab/nsp5A-B187D187DgaCgaT11N.50.001767
ORF1ab/nsp5A-B187D187DgaCgaT11P.1.150.000232
ORF1ab/nsp5A-B187D187DgaCgaT11P.1.160.000374
ORF1ab/nsp5A-B187D187DgaCgaT11P.1.40.000977
ORF1ab/nsp5A-B187D187DgaCgaT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.