CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : Mut = A70A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B70A70AA3333AsyngcTgcC3961870.47222210262-10264
ORF1ab/nsp5A-B70A70AA3333AsyngcTgcA3961240.31313110262-10264
ORF1ab/nsp5A-B70A70AA3333AsyngcTgcG396850.21464610262-10264

Details of the mutation A70A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B70A70AgcTgcC187396All0.000036
ORF1ab/nsp5A-B70A70AgcTgcA124396All0.000024
ORF1ab/nsp5A-B70A70AgcTgcG85396All0.000016
ORF1ab/nsp5A-B70A70AgcTgcA7277B.1.20.000634
ORF1ab/nsp5A-B70A70AgcTgcC477B.1.20.000035
ORF1ab/nsp5A-B70A70AgcTgcG177B.1.20.000009
ORF1ab/nsp5A-B70A70AgcTgcC5858P.50.794521
ORF1ab/nsp5A-B70A70AgcTgcG5656AY.100.029677
ORF1ab/nsp5A-B70A70AgcTgcA2342B.1.1.70.000021
ORF1ab/nsp5A-B70A70AgcTgcC1842B.1.1.70.000016
ORF1ab/nsp5A-B70A70AgcTgcG142B.1.1.70.000001
ORF1ab/nsp5A-B70A70AgcTgcC2230AY.40.000034
ORF1ab/nsp5A-B70A70AgcTgcG730AY.40.000011
ORF1ab/nsp5A-B70A70AgcTgcA130AY.40.000002
ORF1ab/nsp5A-B70A70AgcTgcG1213B.1.1600.000374
ORF1ab/nsp5A-B70A70AgcTgcC113B.1.1600.000031
ORF1ab/nsp5A-B70A70AgcTgcC1112B.1.617.20.000041
ORF1ab/nsp5A-B70A70AgcTgcA112B.1.617.20.000004
ORF1ab/nsp5A-B70A70AgcTgcA911B.1.10.000163
ORF1ab/nsp5A-B70A70AgcTgcC211B.1.10.000036
ORF1ab/nsp5A-B70A70AgcTgcC1111B.1.4290.000259
ORF1ab/nsp5A-B70A70AgcTgcC99AY.440.000055
ORF1ab/nsp5A-B70A70AgcTgcC66AY.116.10.001869
ORF1ab/nsp5A-B70A70AgcTgcC66AY.200.000233
ORF1ab/nsp5A-B70A70AgcTgcA24B.1.1.5190.000079
ORF1ab/nsp5A-B70A70AgcTgcC24B.1.1.5190.000079
ORF1ab/nsp5A-B70A70AgcTgcA44B.1.2210.000284
ORF1ab/nsp5A-B70A70AgcTgcC33AY.1030.000019
ORF1ab/nsp5A-B70A70AgcTgcC33AY.290.000047
ORF1ab/nsp5A-B70A70AgcTgcC33AY.30.00003
ORF1ab/nsp5A-B70A70AgcTgcC33B.1.621.10.001517
ORF1ab/nsp5A-B70A70AgcTgcC120.055556
ORF1ab/nsp5A-B70A70AgcTgcA120.055556
ORF1ab/nsp5A-B70A70AgcTgcC22AY.46.10.002053
ORF1ab/nsp5A-B70A70AgcTgcG22AY.590.001059
ORF1ab/nsp5A-B70A70AgcTgcC22AY.9.10.000167
ORF1ab/nsp5A-B70A70AgcTgcA22B.1.1.3160.00185
ORF1ab/nsp5A-B70A70AgcTgcA22B.1.177.100.001756
ORF1ab/nsp5A-B70A70AgcTgcC12B.1.4270.00005
ORF1ab/nsp5A-B70A70AgcTgcG12B.1.4270.00005
ORF1ab/nsp5A-B70A70AgcTgcA22C.180.005181
ORF1ab/nsp5A-B70A70AgcTgcC11A0.000387
ORF1ab/nsp5A-B70A70AgcTgcC11AY.1060.000335
ORF1ab/nsp5A-B70A70AgcTgcG11AY.1170.000085
ORF1ab/nsp5A-B70A70AgcTgcC11AY.20.000356
ORF1ab/nsp5A-B70A70AgcTgcA11AY.250.000006
ORF1ab/nsp5A-B70A70AgcTgcC11AY.3.10.000085
ORF1ab/nsp5A-B70A70AgcTgcC11AY.330.000067
ORF1ab/nsp5A-B70A70AgcTgcA11AY.420.00004
ORF1ab/nsp5A-B70A70AgcTgcC11AY.50.000021
ORF1ab/nsp5A-B70A70AgcTgcC11AY.980.000079
ORF1ab/nsp5A-B70A70AgcTgcA11B.10.000009
ORF1ab/nsp5A-B70A70AgcTgcA11B.1.1.2160.00089
ORF1ab/nsp5A-B70A70AgcTgcC11B.1.1.2530.002506
ORF1ab/nsp5A-B70A70AgcTgcC11B.1.1.280.000311
ORF1ab/nsp5A-B70A70AgcTgcA11B.1.1.4090.002833
ORF1ab/nsp5A-B70A70AgcTgcC11B.1.1.5260.003546
ORF1ab/nsp5A-B70A70AgcTgcG11B.1.177.570.000281
ORF1ab/nsp5A-B70A70AgcTgcG11B.1.2320.000537
ORF1ab/nsp5A-B70A70AgcTgcC11B.1.4420.035714
ORF1ab/nsp5A-B70A70AgcTgcC11B.1.5240.001406
ORF1ab/nsp5A-B70A70AgcTgcC11B.1.5260.000024
ORF1ab/nsp5A-B70A70AgcTgcC11B.1.5610.000397
ORF1ab/nsp5A-B70A70AgcTgcG11B.1.5960.000087
ORF1ab/nsp5A-B70A70AgcTgcG11B.1.617.10.000129
ORF1ab/nsp5A-B70A70AgcTgcC11B.1.940.027027
ORF1ab/nsp5A-B70A70AgcTgcC11C.350.000774
ORF1ab/nsp5A-B70A70AgcTgcC11P.10.000016
ORF1ab/nsp5A-B70A70AgcTgcC11P.1.150.000232
ORF1ab/nsp5A-B70A70AgcTgcC11P.1.70.000319