CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 260 | A260A | A3523A | syn | gcC | gcT | 6804 | 6687 | 0.982804 | 10832-10834 |
ORF1ab/nsp5A-B | 260 | A260A | A3523A | syn | gcC | gcA | 6804 | 111 | 0.0163139 | 10832-10834 |
ORF1ab/nsp5A-B | 260 | A260A | A3523A | syn | gcC | gcG | 6804 | 6 | 0.000881834 | 10832-10834 |
Details of the mutation A260A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 6687 | 6804 | All | 0.001279 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 111 | 6804 | All | 0.000021 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcG | 6 | 6804 | All | 0.000001 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2774 | 2785 | B.1.1.7 | 0.002483 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 10 | 2785 | B.1.1.7 | 0.000009 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcG | 1 | 2785 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 455 | 457 | AY.4 | 0.000708 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 2 | 457 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 312 | 328 | B.1.617.2 | 0.001175 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 16 | 328 | B.1.617.2 | 0.00006 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 271 | 289 | B.1.177 | 0.003568 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 18 | 289 | B.1.177 | 0.000237 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 218 | 218 | AY.39 | 0.005387 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 206 | 206 | AY.49 | 0.658147 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 178 | 181 | AY.103 | 0.001105 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 3 | 181 | AY.103 | 0.000019 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 175 | 177 | AY.119 | 0.006179 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 2 | 177 | AY.119 | 0.000071 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 172 | 172 | AY.44 | 0.001047 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 104 | 107 | AY.25 | 0.000626 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 3 | 107 | AY.25 | 0.000018 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 99 | 101 | AY.3 | 0.000985 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcG | 1 | 101 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 101 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 94 | 100 | B.1 | 0.000861 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 6 | 100 | B.1 | 0.000055 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 84 | 90 | AY.43 | 0.000372 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 6 | 90 | AY.43 | 0.000027 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 87 | 88 | B.1.351 | 0.002586 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 88 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 67 | 80 | B.1.1.519 | 0.002661 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 13 | 80 | B.1.1.519 | 0.000516 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 80 | 80 | B.1.2 | 0.000704 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 73 | 73 | P.1 | 0.00115 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 63 | 63 | AY.26 | 0.001784 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 48 | 49 | AY.98.1 | 0.002325 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 49 | AY.98.1 | 0.000048 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 48 | 48 | B.1.604 | 0.827586 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 45 | 45 | Q.8 | 0.007421 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 40 | 44 | AY.102 | 0.001061 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 4 | 44 | AY.102 | 0.000106 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 38 | 44 | B.1.1 | 0.000689 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 6 | 44 | B.1.1 | 0.000109 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 35 | 36 | B.1.526 | 0.000823 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 36 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 32 | 32 | AY.113 | 0.004556 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 31 | 31 | B.1.36 | 0.004523 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 30 | 30 | AY.20 | 0.001166 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 29 | 29 | B.1.428.1 | 1 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 20 | 23 | AY.5 | 0.000413 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 3 | 23 | AY.5 | 0.000062 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 22 | 22 | B.1.438.1 | 0.00236 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 21 | 21 | AY.59 | 0.011123 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 21 | 21 | AY.9.1 | 0.001758 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 19 | 21 | B.1.258 | 0.001264 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 2 | 21 | B.1.258 | 0.000133 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 21 | 21 | B.1.474 | 0.039924 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 19 | 19 | AY.111 | 0.00348 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 19 | 19 | C.37 | 0.002205 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 16 | 16 | AY.17 | 0.131148 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 16 | 16 | AY.67 | 0.007428 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 16 | 16 | B.1.234 | 0.002111 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 15 | 15 | B.1.427 | 0.000757 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 15 | 15 | B.1.466.2 | 0.005869 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 14 | 14 | B.1.1.28 | 0.004357 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 13 | 13 | B.1.1.158 | 0.158537 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 10 | 11 | AY.4.2 | 0.000217 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 11 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 11 | 11 | AY.46 | 0.001145 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 10 | 10 | B.1.110.3 | 0.007184 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 10 | 10 | R.1 | 0.0009 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 9 | 9 | B.1.177.16 | 0.00598 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 9 | 9 | B.1.396 | 0.006351 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 8 | 8 | AY.54 | 0.000763 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 7 | 7 | AY.41 | 0.002058 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 7 | 7 | B.1.1.50 | 0.004752 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 6 | 6 | AY.114 | 0.001387 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 6 | 6 | AY.96 | 0.012448 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 6 | 6 | B.1.177.7 | 0.000989 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 4 | 5 | A | 0.001548 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 5 | A | 0.000387 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 5 | 5 | A.23.1 | 0.003521 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 5 | 5 | AY.2 | 0.001781 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 4 | 5 | B.1.1.214 | 0.000222 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 5 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 5 | 5 | B.1.1.46 | 0.021834 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 5 | 5 | B.1.576 | 0.004533 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 4 | 4 | AY.115 | 0.020833 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 4 | 4 | AY.4.3 | 0.003367 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 4 | B | 0.000383 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 4 | B | 0.000128 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 4 | B.1.243 | 0.000209 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 4 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 4 | D.2 | 0.000225 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcG | 1 | 4 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AY.90 | 0.002053 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.160.16 | 0.002788 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.335 | 0.030928 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.22 | 0.004184 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.83 | 0.003448 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.1.262 | 0.030303 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 2 | B.1.1.284 | 0.000107 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 2 | B.1.1.284 | 0.000107 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.177.51 | 0.009132 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | A.12 | 0.166667 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.308 | 0.011765 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.539 | 0.017544 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcG | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.30 | 0.014706 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcA | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | W.2 | 0.004831 |
ORF1ab/nsp5A-B | 260 | A260A | gcC | gcT | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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