CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 96 & Codon = cTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B96P96LP3359LnonsyncCtcTt509350920.99980410340-10342

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B96P96LcCtcTt50925093All0.000974
ORF1ab/nsp5A-B96P96LcCtcTt13761376B.1.4000.590305
ORF1ab/nsp5A-B96P96LcCtcTt10411041B.1.1.70.000932
ORF1ab/nsp5A-B96P96LcCtcTt722722AY.250.004343
ORF1ab/nsp5A-B96P96LcCtcTt407407B.1.10.007383
ORF1ab/nsp5A-B96P96LcCtcTt308308B.10.002821
ORF1ab/nsp5A-B96P96LcCtcTt169169B.1.5260.003972
ORF1ab/nsp5A-B96P96LcCtcTt116116AY.40.000181
ORF1ab/nsp5A-B96P96LcCtcTt9191R.10.008191
ORF1ab/nsp5A-B96P96LcCtcTt6969P.10.001087
ORF1ab/nsp5A-B96P96LcCtcTt6363B.1.400.10.954545
ORF1ab/nsp5A-B96P96LcCtcTt6161B.1.1.2140.003383
ORF1ab/nsp5A-B96P96LcCtcTt4545B.1.617.20.000169
ORF1ab/nsp5A-B96P96LcCtcTt2828AY.390.000692
ORF1ab/nsp5A-B96P96LcCtcTt2727B.1.20.000238
ORF1ab/nsp5A-B96P96LcCtcTt2424AY.440.000146
ORF1ab/nsp5A-B96P96LcCtcTt2424B.1.1.4190.177778
ORF1ab/nsp5A-B96P96LcCtcTt2121AY.1030.00013
ORF1ab/nsp5A-B96P96LcCtcTt2121B.1.1770.000277
ORF1ab/nsp5A-B96P96LcCtcTt2121B.1.177.80.015801
ORF1ab/nsp5A-B96P96LcCtcTt2121B.1.6200.019868
ORF1ab/nsp5A-B96P96LcCtcTt1717B.1.177.320.022942
ORF1ab/nsp5A-B96P96LcCtcTt1717P.1.140.000813
ORF1ab/nsp5A-B96P96LcCtcTt1212AY.330.000801
ORF1ab/nsp5A-B96P96LcCtcTt1111AY.610.001153
ORF1ab/nsp5A-B96P96LcCtcTt1111B.1.1.280.003424
ORF1ab/nsp5A-B96P96LcCtcTt1111B.1.2010.0625
ORF1ab/nsp5A-B96P96LcCtcTt1010A.2.5.10.048077
ORF1ab/nsp5A-B96P96LcCtcTt1010AY.30.000099
ORF1ab/nsp5A-B96P96LcCtcTt1010AY.430.000044
ORF1ab/nsp5A-B96P96LcCtcTt1010B.1.1.5190.000397
ORF1ab/nsp5A-B96P96LcCtcTt99AY.9.10.000754
ORF1ab/nsp5A-B96P96LcCtcTt99B.1.1600.000281
ORF1ab/nsp5A-B96P96LcCtcTt99B.1.160.160.008364
ORF1ab/nsp5A-B96P96LcCtcTt88B.1.177.350.005529
ORF1ab/nsp5A-B96P96LcCtcTt77B.1.4050.08642
ORF1ab/nsp5A-B96P96LcCtcTt66AY.110.008032
ORF1ab/nsp5A-B96P96LcCtcTt66B.1.1.2160.005343
ORF1ab/nsp5A-B96P96LcCtcTt66B.1.1.4320.007595
ORF1ab/nsp5A-B96P96LcCtcTt66B.1.360.000875
ORF1ab/nsp5A-B96P96LcCtcTt66B.1.3690.001711
ORF1ab/nsp5A-B96P96LcCtcTt66Q.10.000758
ORF1ab/nsp5A-B96P96LcCtcTt55AY.1210.000677
ORF1ab/nsp5A-B96P96LcCtcTt55AY.260.000142
ORF1ab/nsp5A-B96P96LcCtcTt55B.1.1.2840.000537
ORF1ab/nsp5A-B96P96LcCtcTt55B.1.1.340.065789
ORF1ab/nsp5A-B96P96LcCtcTt55B.1.2580.000333
ORF1ab/nsp5A-B96P96LcCtcTt55B.1.3510.000149
ORF1ab/nsp5A-B96P96LcCtcTt55B.1.5960.000436
ORF1ab/nsp5A-B96P96LcCtcTt55C.160.005302
ORF1ab/nsp5A-B96P96LcCtcTt55P.1.150.001162
ORF1ab/nsp5A-B96P96LcCtcTt55Q.80.000825
ORF1ab/nsp5A-B96P96LcCtcTt340.166667
ORF1ab/nsp5A-B96P96LcCtcTt44AY.1020.000106
ORF1ab/nsp5A-B96P96LcCtcTt44AY.140.000352
ORF1ab/nsp5A-B96P96LcCtcTt44AY.20.001425
ORF1ab/nsp5A-B96P96LcCtcTt44AY.9.20.000147
ORF1ab/nsp5A-B96P96LcCtcTt44AY.980.000316
ORF1ab/nsp5A-B96P96LcCtcTt44B0.000511
ORF1ab/nsp5A-B96P96LcCtcTt44B.1.177.170.003284
ORF1ab/nsp5A-B96P96LcCtcTt44P.1.170.000647
ORF1ab/nsp5A-B96P96LcCtcTt33AY.230.000209
ORF1ab/nsp5A-B96P96LcCtcTt33AY.350.000699
ORF1ab/nsp5A-B96P96LcCtcTt33B.1.2290.029126
ORF1ab/nsp5A-B96P96LcCtcTt33B.1.2340.000396
ORF1ab/nsp5A-B96P96LcCtcTt33B.1.4090.002344
ORF1ab/nsp5A-B96P96LcCtcTt33B.1.4290.000071
ORF1ab/nsp5A-B96P96LcCtcTt33B.1.5250.000339
ORF1ab/nsp5A-B96P96LcCtcTt33P.1.120.001452
ORF1ab/nsp5A-B96P96LcCtcTt22AY.1190.000071
ORF1ab/nsp5A-B96P96LcCtcTt22AY.3.10.000171
ORF1ab/nsp5A-B96P96LcCtcTt22AY.480.00093
ORF1ab/nsp5A-B96P96LcCtcTt22AY.540.000191
ORF1ab/nsp5A-B96P96LcCtcTt22AY.670.000929
ORF1ab/nsp5A-B96P96LcCtcTt22AY.750.000112
ORF1ab/nsp5A-B96P96LcCtcTt22AY.75.10.000361
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.2200.003717
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.2850.013072
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.3160.00185
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.3720.001377
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.390.001019
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.3920.105263
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.4480.004065
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.700.000682
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1390.001466
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.2390.002442
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.243.20.028986
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.3370.011173
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.3620.003082
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.3750.001639
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.438.10.000215
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.619.10.001283
ORF1ab/nsp5A-B96P96LcCtcTt22P.20.000373
ORF1ab/nsp5A-B96P96LcCtcTt11A0.000387
ORF1ab/nsp5A-B96P96LcCtcTt11A.2.20.001689
ORF1ab/nsp5A-B96P96LcCtcTt11A.270.001656
ORF1ab/nsp5A-B96P96LcCtcTt11AY.100.00053
ORF1ab/nsp5A-B96P96LcCtcTt11AY.1080.001103
ORF1ab/nsp5A-B96P96LcCtcTt11AY.1100.000113
ORF1ab/nsp5A-B96P96LcCtcTt11AY.1140.000231
ORF1ab/nsp5A-B96P96LcCtcTt11AY.1180.000063
ORF1ab/nsp5A-B96P96LcCtcTt11AY.130.000161
ORF1ab/nsp5A-B96P96LcCtcTt11AY.16.10.00047
ORF1ab/nsp5A-B96P96LcCtcTt11AY.190.00114
ORF1ab/nsp5A-B96P96LcCtcTt11AY.200.000039
ORF1ab/nsp5A-B96P96LcCtcTt11AY.240.000431
ORF1ab/nsp5A-B96P96LcCtcTt11AY.290.000016
ORF1ab/nsp5A-B96P96LcCtcTt11AY.360.000148
ORF1ab/nsp5A-B96P96LcCtcTt11AY.39.10.00004
ORF1ab/nsp5A-B96P96LcCtcTt11AY.4.2.10.000149
ORF1ab/nsp5A-B96P96LcCtcTt11AY.410.000294
ORF1ab/nsp5A-B96P96LcCtcTt11AY.450.000122
ORF1ab/nsp5A-B96P96LcCtcTt11AY.50.000021
ORF1ab/nsp5A-B96P96LcCtcTt11AY.60.000041
ORF1ab/nsp5A-B96P96LcCtcTt11AY.640.000595
ORF1ab/nsp5A-B96P96LcCtcTt11AY.780.001541
ORF1ab/nsp5A-B96P96LcCtcTt11AY.80.000606
ORF1ab/nsp5A-B96P96LcCtcTt11AY.920.000287
ORF1ab/nsp5A-B96P96LcCtcTt11AY.990.001049
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.1010.01
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.1100.090909
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.1110.014706
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.1320.014925
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.250.000569
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.2570.009709
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.2790.001121
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.3060.000438
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.3120.001912
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.3170.000412
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.330.000421
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.4090.002833
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.4130.006897
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.500.000679
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.5180.006329
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.5250.005464
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.630.000386
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1570.002985
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1690.014925
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.160.000664
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.440.000519
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.50.001242
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.60.000977
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.730.000566
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.870.000728
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.214.20.0006
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.2210.000071
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.2400.000216
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.2410.000812
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.2430.00007
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.258.70.001912
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.2980.002114
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.3200.001245
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.36.70.004
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.3770.004566
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.4010.008197
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.4250.002994
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.4270.00005
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.428.20.033333
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.4620.007246
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.4990.00105
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.5090.000866
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.5170.000427
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.5580.004566
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.5760.000907
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.5950.000261
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.6090.000479
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.6230.000536
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.6280.000352
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.6360.006711
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.940.027027
ORF1ab/nsp5A-B96P96LcCtcTt11B.470.020408
ORF1ab/nsp5A-B96P96LcCtcTt11C.370.000116
ORF1ab/nsp5A-B96P96LcCtcTt11C.40.01
ORF1ab/nsp5A-B96P96LcCtcTt11C.60.037037
ORF1ab/nsp5A-B96P96LcCtcTt11D.20.000075
ORF1ab/nsp5A-B96P96LcCtcTt11P.1.10.000318