CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 96

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	96	P96L	P3359L	nonsyn	cCt	cTt	5093	5092	0.999804	10340-10342
ORF1ab/nsp5A-B	96	P96L	P3359L	nonsyn	cCT	cTC	5093	1	0.000196348	10340-10342
ORF1ab/nsp5A-B	96	P96S	P3359S	nonsyn	Cct	Tct	4101	4100	0.999756	10340-10342
ORF1ab/nsp5A-B	96	P96S	P3359S	nonsyn	CcT	TcC	4101	1	0.000243843	10340-10342
ORF1ab/nsp5A-B	96	P96H	P3359H	nonsyn	cCt	cAt	286	286	1	10340-10342
ORF1ab/nsp5A-B	96	P96P	P3359P	syn	ccT	ccC	157	133	0.847134	10340-10342
ORF1ab/nsp5A-B	96	P96P	P3359P	syn	ccT	ccA	157	23	0.146497	10340-10342
ORF1ab/nsp5A-B	96	P96P	P3359P	syn	ccT	ccG	157	1	0.00636943	10340-10342
ORF1ab/nsp5A-B	96	P96T	P3359T	nonsyn	Cct	Act	116	115	0.991379	10340-10342
ORF1ab/nsp5A-B	96	P96T	P3359T	nonsyn	CcT	AcA	116	1	0.00862069	10340-10342
ORF1ab/nsp5A-B	96	P96del	P3359del	del	CCT	---	26	26	1	10340-10342
ORF1ab/nsp5A-B	96	P96R	P3359R	nonsyn	cCt	cGt	7	7	1	10340-10342
ORF1ab/nsp5A-B	96	P96del1	P3359del1	del	Cct	-ct	2	2	1	10340-10342
ORF1ab/nsp5A-B	96	P96F	P3359F	nonsyn	CCT	TTC	2	1	0.5	10340-10342
ORF1ab/nsp5A-B	96	P96F	P3359F	nonsyn	CCt	TTt	2	1	0.5	10340-10342
ORF1ab/nsp5A-B	96	P96Q	P3359Q	nonsyn	cCT	cAA	1	1	1	10340-10342
ORF1ab/nsp5A-B	96	P96A	P3359A	nonsyn	Cct	Gct	1	1	1	10340-10342

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5092	5093	All	0.000974
ORF1ab/nsp5A-B	96	P96L	cCT	cTC	1	5093	All	0
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	4100	4101	All	0.000784
ORF1ab/nsp5A-B	96	P96S	CcT	TcC	1	4101	All	0
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1956	1956	B.1.637	0.14293
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1376	1376	B.1.400	0.590305
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1041	1041	B.1.1.7	0.000932
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	722	722	AY.25	0.004343
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	407	407	B.1.1	0.007383
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	386	386	B.1.1.7	0.000346
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	308	308	B.1	0.002821
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	286	286	All	0.000055
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	263	263	B.1.617.2	0.00099
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	204	204	AY.4	0.000318
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	169	169	B.1.526	0.003972
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	133	157	All	0.000025
ORF1ab/nsp5A-B	96	P96P	ccT	ccA	23	157	All	0.000004
ORF1ab/nsp5A-B	96	P96P	ccT	ccG	1	157	All	0
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	155	155	B.1.1.389	0.939394
ORF1ab/nsp5A-B	96	P96T	Cct	Act	115	116	All	0.000022
ORF1ab/nsp5A-B	96	P96T	CcT	AcA	1	116	All	0
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	116	116	AY.4	0.000181
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	112	112	AY.102	0.00297
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	95	95	AY.20	0.003692
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	95	95	B.1	0.00087
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	91	91	AY.43	0.000403
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	91	91	R.1	0.008191
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	87	87	AY.103	0.00054
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	84	84	AY.119	0.002966
ORF1ab/nsp5A-B	96	P96T	Cct	Act	81	81	P.1.17	0.013103
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	75	75	AY.47	0.002333
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	69	69	P.1	0.001087
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	63	63	B.1.400.1	0.954545
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	61	61	B.1.1.214	0.003383
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	45	45	B.1.517	0.019214
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	45	45	B.1.617.2	0.000169
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	36	36	AY.44	0.000219
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	36	36	B.1.617.2	0.000136
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	33	33	AY.111	0.006044
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	29	29	B.1.2	0.000255
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	29	29	B.1.617.1	0.00374
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	28	28	AY.117	0.002366
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	28	28	AY.39	0.000692
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	27	27	B.1.2	0.000238
ORF1ab/nsp5A-B	96	P96del	CCT	---	26	26	All	0.000005
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	26	26	AY.44	0.000158
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	24	24	AY.44	0.000146
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	24	24	B.1.1	0.000435
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	24	24	B.1.1.419	0.177778
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	23	23	AY.25	0.000138
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	21	23	AY.43	0.000093
ORF1ab/nsp5A-B	96	P96P	ccT	ccA	2	23	AY.43	0.000009
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	23	23	B.1.160	0.000717
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	22	22	AY.43	0.000097
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	21	21	AY.103	0.00013
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	21	21	AY.3	0.000209
ORF1ab/nsp5A-B	96	P96P	ccT	ccA	19	21	B.1.1.7	0.000017
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	1	21	B.1.1.7	0.000001
ORF1ab/nsp5A-B	96	P96P	ccT	ccG	1	21	B.1.1.7	0.000001
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	21	21	B.1.177	0.000277
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	21	21	B.1.177.8	0.015801
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	21	21	B.1.620	0.019868
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	17	17	AY.46.6	0.001228
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	17	17	B.1.177.32	0.022942
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	17	17	P.1.14	0.000813
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	16	16	AY.103	0.000099
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	16	16	B.1.617.2	0.00006
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	15	15	R.1	0.00135
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	14	14	B.1.429	0.000329
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	13	13	B.1.1.7	0.000012
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	13	13	B.1.526	0.000306
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	12	12	AY.102	0.000318
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	12	12	AY.33	0.000801
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	11	11	AY.4	0.000017
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	11	11	AY.61	0.001153
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	11	11	B.1.1.28	0.003424
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	11	11	B.1.201	0.0625
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	10	10	A.2.5.1	0.048077
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	10	10	AY.118	0.000626
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	10	10	AY.3	0.000099
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	10	10	AY.43	0.000044
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	10	10	B.1.1.519	0.000397
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	10	10	B.1.399	0.019342
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	10	10	B.1.637	0.000731
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	9	9	AY.9.1	0.000754
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	9	9	B.1.160	0.000281
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	9	9	B.1.160.16	0.008364
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	9	9	C.37	0.001045
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	9	9	P.1	0.000142
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	7	8	AY.4	0.000011
ORF1ab/nsp5A-B	96	P96P	ccT	ccA	1	8	AY.4	0.000002
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	8	8	B.1.177	0.000105
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	8	8	B.1.177.35	0.005529
ORF1ab/nsp5A-B	96	P96R	cCt	cGt	7	7	All	0.000001
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	7	7	AY.118	0.000439
ORF1ab/nsp5A-B	96	P96T	Cct	Act	7	7	AY.3	0.00007
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	7	7	AY.39	0.000173
ORF1ab/nsp5A-B	96	P96del	CCT	---	7	7	B.1.1.7	0.000006
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	7	7	B.1.195	0.035176
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	7	7	B.1.405	0.08642
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	6	6	AY.11	0.008032
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	6	6	AY.46	0.000624
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	6	6	AY.98.1	0.000291
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	6	6	B.1.1.216	0.005343
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	6	6	B.1.1.432	0.007595
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	6	6	B.1.177.86	0.001101
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	6	6	B.1.351	0.000178
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	6	6	B.1.36	0.000875
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	6	6	B.1.369	0.001711
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	6	6	B.1.609	0.002876
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	6	6	Q.1	0.000758
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5	5	AY.121	0.000677
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5	5	AY.26	0.000142
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	5	5	AY.29	0.000079
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	5	5	AY.39.1	0.000198
ORF1ab/nsp5A-B	96	P96T	Cct	Act	5	5	AY.44	0.00003
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	5	5	B.1.1.189	0.007564
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5	5	B.1.1.284	0.000537
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5	5	B.1.1.34	0.065789
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	5	5	B.1.214.2	0.002998
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	5	5	B.1.243	0.000348
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5	5	B.1.258	0.000333
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5	5	B.1.351	0.000149
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	5	5	B.1.427	0.000252
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5	5	B.1.596	0.000436
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5	5	C.16	0.005302
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5	5	P.1.15	0.001162
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	5	5	Q.8	0.000825
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	3	4		0.166667
ORF1ab/nsp5A-B	96	P96L	cCT	cTC	1	4		0.055556
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	4	4	AD.2	0.000876
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	4	4	AY.102	0.000106
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	4	4	AY.113	0.00057
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	4	4	AY.116	0.001147
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	4	4	AY.14	0.000352
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	4	4	AY.14	0.000352
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	4	4	AY.2	0.001425
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	4	4	AY.45	0.000487
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	4	4	AY.5	0.000083
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	4	4	AY.9.2	0.000147
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	4	4	AY.98	0.000316
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	4	4	B	0.000511
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	4	4	B.1.1.326	0.007042
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	4	4	B.1.1.350	0.16
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	4	4	B.1.146	0.016949
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	4	4	B.1.177.17	0.003284
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	4	4	B.1.526	0.000094
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	4	4	C.36.3	0.002269
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	4	4	D.2	0.0003
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	4	4	P.1.17	0.000647
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	AY.100	0.000138
ORF1ab/nsp5A-B	96	P96R	cCt	cGt	3	3	AY.119	0.000106
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	AY.20	0.000117
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	3	3	AY.23	0.000209
ORF1ab/nsp5A-B	96	P96T	Cct	Act	3	3	AY.25	0.000018
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	3	3	AY.35	0.000699
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	3	3	AY.39	0.000074
ORF1ab/nsp5A-B	96	P96T	Cct	Act	2	3	AY.43	0.000009
ORF1ab/nsp5A-B	96	P96T	CcT	AcA	1	3	AY.43	0.000004
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	AY.46.5	0.000595
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	AY.61	0.000314
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	AY.9	0.000203
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	AY.94	0.001328
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	3	3	B.1	0.000027
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.1.28	0.000934
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.1.429	0.013825
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.1.519	0.000119
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.177.7	0.000495
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	3	3	B.1.2	0.000026
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	3	3	B.1.229	0.029126
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.234	0.000396
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	3	3	B.1.234	0.000396
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.258	0.0002
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.36	0.000438
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.36.29	0.001552
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.400	0.001287
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	3	3	B.1.409	0.002344
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	3	3	B.1.427	0.000151
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	3	3	B.1.429	0.000071
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	3	3	B.1.525	0.000339
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.564	0.001278
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	B.1.621.1	0.001517
ORF1ab/nsp5A-B	96	P96T	Cct	Act	3	3	P.1	0.000047
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	3	3	P.1.12	0.001452
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	3	3	P.2	0.00056
ORF1ab/nsp5A-B	96	P96del	CCT	---	2	2		0.111111
ORF1ab/nsp5A-B	96	P96R	cCt	cGt	2	2		0.111111
ORF1ab/nsp5A-B	96	P96S	CcT	TcC	1	2		0.055556
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	2		0.055556
ORF1ab/nsp5A-B	96	P96F	CCT	TTC	1	2		0.055556
ORF1ab/nsp5A-B	96	P96F	CCt	TTt	1	2		0.055556
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	A.2.5	0.000998
ORF1ab/nsp5A-B	96	P96del1	Cct	-ct	2	2	All	0
ORF1ab/nsp5A-B	96	P96F	CCt	TTt	1	2	All	0
ORF1ab/nsp5A-B	96	P96F	CCT	TTC	1	2	All	0
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	AY.101	0.000981
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	AY.119	0.000071
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	AY.120	0.000074
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	AY.121	0.000271
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	2	2	AY.23	0.000139
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	AY.3.1	0.000171
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	2	2	AY.37	0.000632
ORF1ab/nsp5A-B	96	P96del	CCT	---	2	2	AY.4	0.000003
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	AY.4.2	0.000043
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	AY.42	0.00008
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	AY.48	0.00093
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	AY.51	0.001818
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	AY.54	0.000191
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	AY.55	0.001835
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	AY.67	0.000929
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	AY.74	0.000231
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	AY.75	0.000112
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	AY.75.1	0.000361
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	AY.93	0.000546
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	B	0.000256
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	B.1.1.161	0.007067
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.1.220	0.003717
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	B.1.1.25	0.001137
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.1.285	0.013072
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	B.1.1.305	0.007722
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	2	2	B.1.1.305	0.007722
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.1.316	0.00185
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.1.372	0.001377
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.1.39	0.001019
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.1.392	0.105263
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.1.448	0.004065
ORF1ab/nsp5A-B	96	P96T	Cct	Act	2	2	B.1.1.46	0.008734
ORF1ab/nsp5A-B	96	P96T	Cct	Act	2	2	B.1.1.7	0.000002
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.1.70	0.000682
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.139	0.001466
ORF1ab/nsp5A-B	96	P96del	CCT	---	2	2	B.1.177	0.000026
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	B.1.221	0.000142
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	B.1.232	0.001075
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.239	0.002442
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.243.2	0.028986
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.337	0.011173
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.362	0.003082
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	2	2	B.1.367	0.001585
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	B.1.367	0.001585
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.375	0.001639
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.438.1	0.000215
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	B.1.596	0.000174
ORF1ab/nsp5A-B	96	P96T	Cct	Act	2	2	B.1.617.2	0.000008
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	B.1.619.1	0.001283
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	2	2	L.3	0.007092
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	2	2	P.2	0.000373
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	1	1		0.055556
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	A	0.000387
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	A	0.000387
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	A.2.2	0.001689
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	A.27	0.001656
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	A.27	0.001656
ORF1ab/nsp5A-B	96	P96A	Cct	Gct	1	1	All	0
ORF1ab/nsp5A-B	96	P96Q	cCT	cAA	1	1	All	0
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.10	0.00053
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	1	1	AY.100	0.000046
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.107	0.000466
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.108	0.001103
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.110	0.000113
ORF1ab/nsp5A-B	96	P96T	Cct	Act	1	1	AY.114	0.000231
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.114	0.000231
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.114	0.000231
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	AY.116.1	0.000311
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	1	1	AY.117	0.000085
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.118	0.000063
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.12	0.000316
ORF1ab/nsp5A-B	96	P96T	Cct	Act	1	1	AY.120	0.000037
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	AY.120	0.000037
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.13	0.000161
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.16.1	0.00047
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.19	0.00114
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.2	0.000356
ORF1ab/nsp5A-B	96	P96T	Cct	Act	1	1	AY.2	0.000356
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.20	0.000039
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.23	0.00007
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.24	0.000431
ORF1ab/nsp5A-B	96	P96R	cCt	cGt	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	96	P96A	Cct	Gct	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	AY.26	0.000028
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.26	0.000028
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.29	0.000016
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.3.1	0.000085
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.33	0.000067
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	1	1	AY.34	0.000097
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.36	0.000148
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.36	0.000148
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	AY.39	0.000025
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.39.1	0.00004
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	1	1	AY.39.1	0.00004
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.4.2.1	0.000149
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.4.3	0.000842
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	AY.4.5	0.000107
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.41	0.000294
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	AY.42	0.00004
ORF1ab/nsp5A-B	96	P96del1	Cct	-ct	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.45	0.000122
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.46.2	0.000635
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.5	0.000021
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.5.3	0.000337
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.59	0.00053
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.6	0.000041
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.62	0.000436
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.64	0.000595
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.66	0.00107
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	AY.67	0.000464
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.68	0.000274
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.7.1	0.000113
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.75	0.000056
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.77	0.001127
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.78	0.001541
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.8	0.000606
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	AY.9	0.000068
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	1	1	AY.9.1	0.000084
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.9.2	0.000037
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.92	0.000287
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	1	1	AY.95	0.000761
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	1	1	AY.98	0.000079
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	AY.99	0.001049
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	AY.99.1	0.001553
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	AY.99.2	0.000092
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	B.1	0.000009
ORF1ab/nsp5A-B	96	P96T	Cct	Act	1	1	B.1	0.000009
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.101	0.01
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.110	0.090909
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.111	0.014706
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.132	0.014925
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	B.1.1.198	0.001468
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.214	0.000055
ORF1ab/nsp5A-B	96	P96P	ccT	ccC	1	1	B.1.1.222	0.000204
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.25	0.000569
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.257	0.009709
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.279	0.001121
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.306	0.000438
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.311	0.000358
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.312	0.001912
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.317	0.000412
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.317	0.000412
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.318	0.000302
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.33	0.000421
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.362	0.005618
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.37	0.000193
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.388	0.045455
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.39	0.00051
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.409	0.002833
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.409	0.002833
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.413	0.006897
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	B.1.1.420	0.001006
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.434	0.000349
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.442	0.018519
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.50	0.000679
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.518	0.006329
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.525	0.005464
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.1.63	0.000386
ORF1ab/nsp5A-B	96	P96R	cCt	cGt	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.1.70	0.000341
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.110.3	0.000718
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.157	0.002985
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.166	0.008475
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.169	0.014925
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.170	0.00431
ORF1ab/nsp5A-B	96	P96P	ccT	ccA	1	1	B.1.177	0.000013
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.177.16	0.000664
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.177.44	0.000519
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.177.5	0.001242
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.177.6	0.000977
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.177.60	0.000218
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.177.73	0.000566
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.177.77	0.000726
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.177.8	0.000752
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.177.81	0.000189
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.177.87	0.000728
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.214.2	0.0006
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.221	0.000071
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.240	0.000216
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.241	0.000812
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.243	0.00007
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.258.7	0.001912
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.280	0.007143
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.298	0.002114
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.320	0.001245
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.336	0.002439
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.36.19	0.009259
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.36.7	0.004
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.377	0.004566
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.401	0.008197
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.425	0.002994
ORF1ab/nsp5A-B	96	P96T	Cct	Act	1	1	B.1.427	0.00005
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.427	0.00005
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.428.2	0.033333
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.438.1	0.000107
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.462	0.007246
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.499	0.00105
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.499	0.00105
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.509	0.000866
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.517	0.000427
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.521	0.004975
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.525	0.000113
ORF1ab/nsp5A-B	96	P96del1	Cct	-ct	1	1	B.1.526	0.000024
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.558	0.004566
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.575	0.000303
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.575.2	0.004808
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.576	0.000907
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.582	0.000491
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.595	0.000261
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.595	0.000261
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.609	0.000479
ORF1ab/nsp5A-B	96	P96T	Cct	Act	1	1	B.1.617.1	0.000129
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	96	P96Q	cCT	cAA	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.621	0.000089
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.623	0.000536
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.628	0.000352
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.628	0.000352
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.636	0.006711
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.9.5	0.005682
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.1.93	0.000934
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.1.94	0.027027
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	B.28	0.003279
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	B.4.8	0.071429
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	B.47	0.020408
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	B.6.6	0.000889
ORF1ab/nsp5A-B	96	P96T	Cct	Act	1	1	B.60	0.015873
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	C.1.2	0.004255
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	C.35	0.000774
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	C.37	0.000116
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	C.4	0.01
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	C.6	0.037037
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	D.2	0.000075
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	D.2	0.000075
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	N.4	0.004255
ORF1ab/nsp5A-B	96	P96L	cCt	cTt	1	1	P.1.1	0.000318
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	P.1.1	0.000318
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	P.1.12	0.000484
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	P.1.13	0.000898
ORF1ab/nsp5A-B	96	P96H	cCt	cAt	1	1	P.1.15	0.000232
ORF1ab/nsp5A-B	96	P96T	Cct	Act	1	1	P.1.17.1	0.000875
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	P.1.7	0.000319
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	Q.1	0.000126
ORF1ab/nsp5A-B	96	P96del	CCT	---	1	1	Q.2	0.000613
ORF1ab/nsp5A-B	96	P96S	Cct	Tct	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.