CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 96

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B96P96LP3359LnonsyncCtcTt509350920.99980410340-10342
ORF1ab/nsp5A-B96P96LP3359LnonsyncCTcTC509310.00019634810340-10342
ORF1ab/nsp5A-B96P96SP3359SnonsynCctTct410141000.99975610340-10342
ORF1ab/nsp5A-B96P96SP3359SnonsynCcTTcC410110.00024384310340-10342
ORF1ab/nsp5A-B96P96HP3359HnonsyncCtcAt286286110340-10342
ORF1ab/nsp5A-B96P96PP3359PsynccTccC1571330.84713410340-10342
ORF1ab/nsp5A-B96P96PP3359PsynccTccA157230.14649710340-10342
ORF1ab/nsp5A-B96P96PP3359PsynccTccG15710.0063694310340-10342
ORF1ab/nsp5A-B96P96TP3359TnonsynCctAct1161150.99137910340-10342
ORF1ab/nsp5A-B96P96TP3359TnonsynCcTAcA11610.0086206910340-10342
ORF1ab/nsp5A-B96P96delP3359deldelCCT---2626110340-10342
ORF1ab/nsp5A-B96P96RP3359RnonsyncCtcGt77110340-10342
ORF1ab/nsp5A-B96P96del1P3359del1delCct-ct22110340-10342
ORF1ab/nsp5A-B96P96FP3359FnonsynCCTTTC210.510340-10342
ORF1ab/nsp5A-B96P96FP3359FnonsynCCtTTt210.510340-10342
ORF1ab/nsp5A-B96P96QP3359QnonsyncCTcAA11110340-10342
ORF1ab/nsp5A-B96P96AP3359AnonsynCctGct11110340-10342

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B96P96LcCtcTt50925093All0.000974
ORF1ab/nsp5A-B96P96LcCTcTC15093All0
ORF1ab/nsp5A-B96P96SCctTct41004101All0.000784
ORF1ab/nsp5A-B96P96SCcTTcC14101All0
ORF1ab/nsp5A-B96P96SCctTct19561956B.1.6370.14293
ORF1ab/nsp5A-B96P96LcCtcTt13761376B.1.4000.590305
ORF1ab/nsp5A-B96P96LcCtcTt10411041B.1.1.70.000932
ORF1ab/nsp5A-B96P96LcCtcTt722722AY.250.004343
ORF1ab/nsp5A-B96P96LcCtcTt407407B.1.10.007383
ORF1ab/nsp5A-B96P96SCctTct386386B.1.1.70.000346
ORF1ab/nsp5A-B96P96LcCtcTt308308B.10.002821
ORF1ab/nsp5A-B96P96HcCtcAt286286All0.000055
ORF1ab/nsp5A-B96P96SCctTct263263B.1.617.20.00099
ORF1ab/nsp5A-B96P96SCctTct204204AY.40.000318
ORF1ab/nsp5A-B96P96LcCtcTt169169B.1.5260.003972
ORF1ab/nsp5A-B96P96PccTccC133157All0.000025
ORF1ab/nsp5A-B96P96PccTccA23157All0.000004
ORF1ab/nsp5A-B96P96PccTccG1157All0
ORF1ab/nsp5A-B96P96SCctTct155155B.1.1.3890.939394
ORF1ab/nsp5A-B96P96TCctAct115116All0.000022
ORF1ab/nsp5A-B96P96TCcTAcA1116All0
ORF1ab/nsp5A-B96P96LcCtcTt116116AY.40.000181
ORF1ab/nsp5A-B96P96SCctTct112112AY.1020.00297
ORF1ab/nsp5A-B96P96HcCtcAt9595AY.200.003692
ORF1ab/nsp5A-B96P96SCctTct9595B.10.00087
ORF1ab/nsp5A-B96P96HcCtcAt9191AY.430.000403
ORF1ab/nsp5A-B96P96LcCtcTt9191R.10.008191
ORF1ab/nsp5A-B96P96SCctTct8787AY.1030.00054
ORF1ab/nsp5A-B96P96SCctTct8484AY.1190.002966
ORF1ab/nsp5A-B96P96TCctAct8181P.1.170.013103
ORF1ab/nsp5A-B96P96SCctTct7575AY.470.002333
ORF1ab/nsp5A-B96P96LcCtcTt6969P.10.001087
ORF1ab/nsp5A-B96P96LcCtcTt6363B.1.400.10.954545
ORF1ab/nsp5A-B96P96LcCtcTt6161B.1.1.2140.003383
ORF1ab/nsp5A-B96P96SCctTct4545B.1.5170.019214
ORF1ab/nsp5A-B96P96LcCtcTt4545B.1.617.20.000169
ORF1ab/nsp5A-B96P96SCctTct3636AY.440.000219
ORF1ab/nsp5A-B96P96PccTccC3636B.1.617.20.000136
ORF1ab/nsp5A-B96P96SCctTct3333AY.1110.006044
ORF1ab/nsp5A-B96P96SCctTct2929B.1.20.000255
ORF1ab/nsp5A-B96P96SCctTct2929B.1.617.10.00374
ORF1ab/nsp5A-B96P96SCctTct2828AY.1170.002366
ORF1ab/nsp5A-B96P96LcCtcTt2828AY.390.000692
ORF1ab/nsp5A-B96P96LcCtcTt2727B.1.20.000238
ORF1ab/nsp5A-B96P96delCCT---2626All0.000005
ORF1ab/nsp5A-B96P96HcCtcAt2626AY.440.000158
ORF1ab/nsp5A-B96P96LcCtcTt2424AY.440.000146
ORF1ab/nsp5A-B96P96SCctTct2424B.1.10.000435
ORF1ab/nsp5A-B96P96LcCtcTt2424B.1.1.4190.177778
ORF1ab/nsp5A-B96P96SCctTct2323AY.250.000138
ORF1ab/nsp5A-B96P96PccTccC2123AY.430.000093
ORF1ab/nsp5A-B96P96PccTccA223AY.430.000009
ORF1ab/nsp5A-B96P96SCctTct2323B.1.1600.000717
ORF1ab/nsp5A-B96P96SCctTct2222AY.430.000097
ORF1ab/nsp5A-B96P96LcCtcTt2121AY.1030.00013
ORF1ab/nsp5A-B96P96SCctTct2121AY.30.000209
ORF1ab/nsp5A-B96P96PccTccA1921B.1.1.70.000017
ORF1ab/nsp5A-B96P96PccTccC121B.1.1.70.000001
ORF1ab/nsp5A-B96P96PccTccG121B.1.1.70.000001
ORF1ab/nsp5A-B96P96LcCtcTt2121B.1.1770.000277
ORF1ab/nsp5A-B96P96LcCtcTt2121B.1.177.80.015801
ORF1ab/nsp5A-B96P96LcCtcTt2121B.1.6200.019868
ORF1ab/nsp5A-B96P96SCctTct1717AY.46.60.001228
ORF1ab/nsp5A-B96P96LcCtcTt1717B.1.177.320.022942
ORF1ab/nsp5A-B96P96LcCtcTt1717P.1.140.000813
ORF1ab/nsp5A-B96P96PccTccC1616AY.1030.000099
ORF1ab/nsp5A-B96P96HcCtcAt1616B.1.617.20.00006
ORF1ab/nsp5A-B96P96SCctTct1515R.10.00135
ORF1ab/nsp5A-B96P96SCctTct1414B.1.4290.000329
ORF1ab/nsp5A-B96P96HcCtcAt1313B.1.1.70.000012
ORF1ab/nsp5A-B96P96SCctTct1313B.1.5260.000306
ORF1ab/nsp5A-B96P96PccTccC1212AY.1020.000318
ORF1ab/nsp5A-B96P96LcCtcTt1212AY.330.000801
ORF1ab/nsp5A-B96P96HcCtcAt1111AY.40.000017
ORF1ab/nsp5A-B96P96LcCtcTt1111AY.610.001153
ORF1ab/nsp5A-B96P96LcCtcTt1111B.1.1.280.003424
ORF1ab/nsp5A-B96P96LcCtcTt1111B.1.2010.0625
ORF1ab/nsp5A-B96P96LcCtcTt1010A.2.5.10.048077
ORF1ab/nsp5A-B96P96SCctTct1010AY.1180.000626
ORF1ab/nsp5A-B96P96LcCtcTt1010AY.30.000099
ORF1ab/nsp5A-B96P96LcCtcTt1010AY.430.000044
ORF1ab/nsp5A-B96P96LcCtcTt1010B.1.1.5190.000397
ORF1ab/nsp5A-B96P96SCctTct1010B.1.3990.019342
ORF1ab/nsp5A-B96P96HcCtcAt1010B.1.6370.000731
ORF1ab/nsp5A-B96P96LcCtcTt99AY.9.10.000754
ORF1ab/nsp5A-B96P96LcCtcTt99B.1.1600.000281
ORF1ab/nsp5A-B96P96LcCtcTt99B.1.160.160.008364
ORF1ab/nsp5A-B96P96SCctTct99C.370.001045
ORF1ab/nsp5A-B96P96SCctTct99P.10.000142
ORF1ab/nsp5A-B96P96PccTccC78AY.40.000011
ORF1ab/nsp5A-B96P96PccTccA18AY.40.000002
ORF1ab/nsp5A-B96P96SCctTct88B.1.1770.000105
ORF1ab/nsp5A-B96P96LcCtcTt88B.1.177.350.005529
ORF1ab/nsp5A-B96P96RcCtcGt77All0.000001
ORF1ab/nsp5A-B96P96PccTccC77AY.1180.000439
ORF1ab/nsp5A-B96P96TCctAct77AY.30.00007
ORF1ab/nsp5A-B96P96SCctTct77AY.390.000173
ORF1ab/nsp5A-B96P96delCCT---77B.1.1.70.000006
ORF1ab/nsp5A-B96P96SCctTct77B.1.1950.035176
ORF1ab/nsp5A-B96P96LcCtcTt77B.1.4050.08642
ORF1ab/nsp5A-B96P96LcCtcTt66AY.110.008032
ORF1ab/nsp5A-B96P96SCctTct66AY.460.000624
ORF1ab/nsp5A-B96P96SCctTct66AY.98.10.000291
ORF1ab/nsp5A-B96P96LcCtcTt66B.1.1.2160.005343
ORF1ab/nsp5A-B96P96LcCtcTt66B.1.1.4320.007595
ORF1ab/nsp5A-B96P96SCctTct66B.1.177.860.001101
ORF1ab/nsp5A-B96P96SCctTct66B.1.3510.000178
ORF1ab/nsp5A-B96P96LcCtcTt66B.1.360.000875
ORF1ab/nsp5A-B96P96LcCtcTt66B.1.3690.001711
ORF1ab/nsp5A-B96P96SCctTct66B.1.6090.002876
ORF1ab/nsp5A-B96P96LcCtcTt66Q.10.000758
ORF1ab/nsp5A-B96P96LcCtcTt55AY.1210.000677
ORF1ab/nsp5A-B96P96LcCtcTt55AY.260.000142
ORF1ab/nsp5A-B96P96SCctTct55AY.290.000079
ORF1ab/nsp5A-B96P96SCctTct55AY.39.10.000198
ORF1ab/nsp5A-B96P96TCctAct55AY.440.00003
ORF1ab/nsp5A-B96P96SCctTct55B.1.1.1890.007564
ORF1ab/nsp5A-B96P96LcCtcTt55B.1.1.2840.000537
ORF1ab/nsp5A-B96P96LcCtcTt55B.1.1.340.065789
ORF1ab/nsp5A-B96P96SCctTct55B.1.214.20.002998
ORF1ab/nsp5A-B96P96SCctTct55B.1.2430.000348
ORF1ab/nsp5A-B96P96LcCtcTt55B.1.2580.000333
ORF1ab/nsp5A-B96P96LcCtcTt55B.1.3510.000149
ORF1ab/nsp5A-B96P96SCctTct55B.1.4270.000252
ORF1ab/nsp5A-B96P96LcCtcTt55B.1.5960.000436
ORF1ab/nsp5A-B96P96LcCtcTt55C.160.005302
ORF1ab/nsp5A-B96P96LcCtcTt55P.1.150.001162
ORF1ab/nsp5A-B96P96LcCtcTt55Q.80.000825
ORF1ab/nsp5A-B96P96LcCtcTt340.166667
ORF1ab/nsp5A-B96P96LcCTcTC140.055556
ORF1ab/nsp5A-B96P96SCctTct44AD.20.000876
ORF1ab/nsp5A-B96P96LcCtcTt44AY.1020.000106
ORF1ab/nsp5A-B96P96PccTccC44AY.1130.00057
ORF1ab/nsp5A-B96P96SCctTct44AY.1160.001147
ORF1ab/nsp5A-B96P96LcCtcTt44AY.140.000352
ORF1ab/nsp5A-B96P96PccTccC44AY.140.000352
ORF1ab/nsp5A-B96P96LcCtcTt44AY.20.001425
ORF1ab/nsp5A-B96P96SCctTct44AY.450.000487
ORF1ab/nsp5A-B96P96SCctTct44AY.50.000083
ORF1ab/nsp5A-B96P96LcCtcTt44AY.9.20.000147
ORF1ab/nsp5A-B96P96LcCtcTt44AY.980.000316
ORF1ab/nsp5A-B96P96LcCtcTt44B0.000511
ORF1ab/nsp5A-B96P96SCctTct44B.1.1.3260.007042
ORF1ab/nsp5A-B96P96SCctTct44B.1.1.3500.16
ORF1ab/nsp5A-B96P96SCctTct44B.1.1460.016949
ORF1ab/nsp5A-B96P96LcCtcTt44B.1.177.170.003284
ORF1ab/nsp5A-B96P96HcCtcAt44B.1.5260.000094
ORF1ab/nsp5A-B96P96SCctTct44C.36.30.002269
ORF1ab/nsp5A-B96P96PccTccC44D.20.0003
ORF1ab/nsp5A-B96P96LcCtcTt44P.1.170.000647
ORF1ab/nsp5A-B96P96SCctTct33AY.1000.000138
ORF1ab/nsp5A-B96P96RcCtcGt33AY.1190.000106
ORF1ab/nsp5A-B96P96SCctTct33AY.200.000117
ORF1ab/nsp5A-B96P96LcCtcTt33AY.230.000209
ORF1ab/nsp5A-B96P96TCctAct33AY.250.000018
ORF1ab/nsp5A-B96P96LcCtcTt33AY.350.000699
ORF1ab/nsp5A-B96P96PccTccC33AY.390.000074
ORF1ab/nsp5A-B96P96TCctAct23AY.430.000009
ORF1ab/nsp5A-B96P96TCcTAcA13AY.430.000004
ORF1ab/nsp5A-B96P96SCctTct33AY.46.50.000595
ORF1ab/nsp5A-B96P96SCctTct33AY.610.000314
ORF1ab/nsp5A-B96P96SCctTct33AY.90.000203
ORF1ab/nsp5A-B96P96SCctTct33AY.940.001328
ORF1ab/nsp5A-B96P96HcCtcAt33B.10.000027
ORF1ab/nsp5A-B96P96SCctTct33B.1.1.280.000934
ORF1ab/nsp5A-B96P96SCctTct33B.1.1.4290.013825
ORF1ab/nsp5A-B96P96SCctTct33B.1.1.5190.000119
ORF1ab/nsp5A-B96P96SCctTct33B.1.177.70.000495
ORF1ab/nsp5A-B96P96PccTccC33B.1.20.000026
ORF1ab/nsp5A-B96P96LcCtcTt33B.1.2290.029126
ORF1ab/nsp5A-B96P96SCctTct33B.1.2340.000396
ORF1ab/nsp5A-B96P96LcCtcTt33B.1.2340.000396
ORF1ab/nsp5A-B96P96SCctTct33B.1.2580.0002
ORF1ab/nsp5A-B96P96SCctTct33B.1.360.000438
ORF1ab/nsp5A-B96P96SCctTct33B.1.36.290.001552
ORF1ab/nsp5A-B96P96SCctTct33B.1.4000.001287
ORF1ab/nsp5A-B96P96LcCtcTt33B.1.4090.002344
ORF1ab/nsp5A-B96P96HcCtcAt33B.1.4270.000151
ORF1ab/nsp5A-B96P96LcCtcTt33B.1.4290.000071
ORF1ab/nsp5A-B96P96LcCtcTt33B.1.5250.000339
ORF1ab/nsp5A-B96P96SCctTct33B.1.5640.001278
ORF1ab/nsp5A-B96P96SCctTct33B.1.621.10.001517
ORF1ab/nsp5A-B96P96TCctAct33P.10.000047
ORF1ab/nsp5A-B96P96LcCtcTt33P.1.120.001452
ORF1ab/nsp5A-B96P96SCctTct33P.20.00056
ORF1ab/nsp5A-B96P96delCCT---220.111111
ORF1ab/nsp5A-B96P96RcCtcGt220.111111
ORF1ab/nsp5A-B96P96SCcTTcC120.055556
ORF1ab/nsp5A-B96P96SCctTct120.055556
ORF1ab/nsp5A-B96P96FCCTTTC120.055556
ORF1ab/nsp5A-B96P96FCCtTTt120.055556
ORF1ab/nsp5A-B96P96SCctTct22A.2.50.000998
ORF1ab/nsp5A-B96P96del1Cct-ct22All0
ORF1ab/nsp5A-B96P96FCCtTTt12All0
ORF1ab/nsp5A-B96P96FCCTTTC12All0
ORF1ab/nsp5A-B96P96SCctTct22AY.1010.000981
ORF1ab/nsp5A-B96P96LcCtcTt22AY.1190.000071
ORF1ab/nsp5A-B96P96SCctTct22AY.1200.000074
ORF1ab/nsp5A-B96P96SCctTct22AY.1210.000271
ORF1ab/nsp5A-B96P96PccTccC22AY.230.000139
ORF1ab/nsp5A-B96P96LcCtcTt22AY.3.10.000171
ORF1ab/nsp5A-B96P96PccTccC22AY.370.000632
ORF1ab/nsp5A-B96P96delCCT---22AY.40.000003
ORF1ab/nsp5A-B96P96SCctTct22AY.4.20.000043
ORF1ab/nsp5A-B96P96SCctTct22AY.420.00008
ORF1ab/nsp5A-B96P96LcCtcTt22AY.480.00093
ORF1ab/nsp5A-B96P96SCctTct22AY.510.001818
ORF1ab/nsp5A-B96P96LcCtcTt22AY.540.000191
ORF1ab/nsp5A-B96P96SCctTct22AY.550.001835
ORF1ab/nsp5A-B96P96LcCtcTt22AY.670.000929
ORF1ab/nsp5A-B96P96SCctTct22AY.740.000231
ORF1ab/nsp5A-B96P96LcCtcTt22AY.750.000112
ORF1ab/nsp5A-B96P96LcCtcTt22AY.75.10.000361
ORF1ab/nsp5A-B96P96SCctTct22AY.930.000546
ORF1ab/nsp5A-B96P96SCctTct22B0.000256
ORF1ab/nsp5A-B96P96SCctTct22B.1.1.1610.007067
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.2200.003717
ORF1ab/nsp5A-B96P96SCctTct22B.1.1.250.001137
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.2850.013072
ORF1ab/nsp5A-B96P96SCctTct22B.1.1.3050.007722
ORF1ab/nsp5A-B96P96HcCtcAt22B.1.1.3050.007722
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.3160.00185
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.3720.001377
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.390.001019
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.3920.105263
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.4480.004065
ORF1ab/nsp5A-B96P96TCctAct22B.1.1.460.008734
ORF1ab/nsp5A-B96P96TCctAct22B.1.1.70.000002
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1.700.000682
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.1390.001466
ORF1ab/nsp5A-B96P96delCCT---22B.1.1770.000026
ORF1ab/nsp5A-B96P96SCctTct22B.1.2210.000142
ORF1ab/nsp5A-B96P96SCctTct22B.1.2320.001075
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.2390.002442
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.243.20.028986
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.3370.011173
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.3620.003082
ORF1ab/nsp5A-B96P96PccTccC22B.1.3670.001585
ORF1ab/nsp5A-B96P96SCctTct22B.1.3670.001585
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.3750.001639
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.438.10.000215
ORF1ab/nsp5A-B96P96SCctTct22B.1.5960.000174
ORF1ab/nsp5A-B96P96TCctAct22B.1.617.20.000008
ORF1ab/nsp5A-B96P96LcCtcTt22B.1.619.10.001283
ORF1ab/nsp5A-B96P96SCctTct22L.30.007092
ORF1ab/nsp5A-B96P96LcCtcTt22P.20.000373
ORF1ab/nsp5A-B96P96PccTccC110.055556
ORF1ab/nsp5A-B96P96LcCtcTt11A0.000387
ORF1ab/nsp5A-B96P96SCctTct11A0.000387
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ORF1ab/nsp5A-B96P96SCctTct11A.270.001656
ORF1ab/nsp5A-B96P96LcCtcTt11A.270.001656
ORF1ab/nsp5A-B96P96ACctGct11All0
ORF1ab/nsp5A-B96P96QcCTcAA11All0
ORF1ab/nsp5A-B96P96LcCtcTt11AY.100.00053
ORF1ab/nsp5A-B96P96PccTccC11AY.1000.000046
ORF1ab/nsp5A-B96P96SCctTct11AY.1070.000466
ORF1ab/nsp5A-B96P96LcCtcTt11AY.1080.001103
ORF1ab/nsp5A-B96P96LcCtcTt11AY.1100.000113
ORF1ab/nsp5A-B96P96TCctAct11AY.1140.000231
ORF1ab/nsp5A-B96P96LcCtcTt11AY.1140.000231
ORF1ab/nsp5A-B96P96SCctTct11AY.1140.000231
ORF1ab/nsp5A-B96P96HcCtcAt11AY.116.10.000311
ORF1ab/nsp5A-B96P96PccTccC11AY.1170.000085
ORF1ab/nsp5A-B96P96LcCtcTt11AY.1180.000063
ORF1ab/nsp5A-B96P96SCctTct11AY.120.000316
ORF1ab/nsp5A-B96P96TCctAct11AY.1200.000037
ORF1ab/nsp5A-B96P96HcCtcAt11AY.1200.000037
ORF1ab/nsp5A-B96P96LcCtcTt11AY.130.000161
ORF1ab/nsp5A-B96P96LcCtcTt11AY.16.10.00047
ORF1ab/nsp5A-B96P96LcCtcTt11AY.190.00114
ORF1ab/nsp5A-B96P96SCctTct11AY.20.000356
ORF1ab/nsp5A-B96P96TCctAct11AY.20.000356
ORF1ab/nsp5A-B96P96LcCtcTt11AY.200.000039
ORF1ab/nsp5A-B96P96SCctTct11AY.230.00007
ORF1ab/nsp5A-B96P96LcCtcTt11AY.240.000431
ORF1ab/nsp5A-B96P96RcCtcGt11AY.250.000006
ORF1ab/nsp5A-B96P96ACctGct11AY.250.000006
ORF1ab/nsp5A-B96P96HcCtcAt11AY.260.000028
ORF1ab/nsp5A-B96P96SCctTct11AY.260.000028
ORF1ab/nsp5A-B96P96LcCtcTt11AY.290.000016
ORF1ab/nsp5A-B96P96SCctTct11AY.3.10.000085
ORF1ab/nsp5A-B96P96SCctTct11AY.330.000067
ORF1ab/nsp5A-B96P96PccTccC11AY.340.000097
ORF1ab/nsp5A-B96P96SCctTct11AY.360.000148
ORF1ab/nsp5A-B96P96LcCtcTt11AY.360.000148
ORF1ab/nsp5A-B96P96HcCtcAt11AY.390.000025
ORF1ab/nsp5A-B96P96LcCtcTt11AY.39.10.00004
ORF1ab/nsp5A-B96P96PccTccC11AY.39.10.00004
ORF1ab/nsp5A-B96P96LcCtcTt11AY.4.2.10.000149
ORF1ab/nsp5A-B96P96SCctTct11AY.4.30.000842
ORF1ab/nsp5A-B96P96delCCT---11AY.4.50.000107
ORF1ab/nsp5A-B96P96LcCtcTt11AY.410.000294
ORF1ab/nsp5A-B96P96HcCtcAt11AY.420.00004
ORF1ab/nsp5A-B96P96del1Cct-ct11AY.440.000006
ORF1ab/nsp5A-B96P96LcCtcTt11AY.450.000122
ORF1ab/nsp5A-B96P96SCctTct11AY.46.20.000635
ORF1ab/nsp5A-B96P96LcCtcTt11AY.50.000021
ORF1ab/nsp5A-B96P96SCctTct11AY.5.30.000337
ORF1ab/nsp5A-B96P96SCctTct11AY.590.00053
ORF1ab/nsp5A-B96P96LcCtcTt11AY.60.000041
ORF1ab/nsp5A-B96P96SCctTct11AY.620.000436
ORF1ab/nsp5A-B96P96LcCtcTt11AY.640.000595
ORF1ab/nsp5A-B96P96SCctTct11AY.660.00107
ORF1ab/nsp5A-B96P96delCCT---11AY.670.000464
ORF1ab/nsp5A-B96P96SCctTct11AY.680.000274
ORF1ab/nsp5A-B96P96SCctTct11AY.7.10.000113
ORF1ab/nsp5A-B96P96SCctTct11AY.750.000056
ORF1ab/nsp5A-B96P96SCctTct11AY.770.001127
ORF1ab/nsp5A-B96P96LcCtcTt11AY.780.001541
ORF1ab/nsp5A-B96P96LcCtcTt11AY.80.000606
ORF1ab/nsp5A-B96P96delCCT---11AY.90.000068
ORF1ab/nsp5A-B96P96PccTccC11AY.9.10.000084
ORF1ab/nsp5A-B96P96SCctTct11AY.9.20.000037
ORF1ab/nsp5A-B96P96LcCtcTt11AY.920.000287
ORF1ab/nsp5A-B96P96PccTccC11AY.950.000761
ORF1ab/nsp5A-B96P96PccTccC11AY.980.000079
ORF1ab/nsp5A-B96P96LcCtcTt11AY.990.001049
ORF1ab/nsp5A-B96P96delCCT---11AY.99.10.001553
ORF1ab/nsp5A-B96P96SCctTct11AY.99.20.000092
ORF1ab/nsp5A-B96P96delCCT---11B.10.000009
ORF1ab/nsp5A-B96P96TCctAct11B.10.000009
ORF1ab/nsp5A-B96P96HcCtcAt11B.1.10.000018
ORF1ab/nsp5A-B96P96delCCT---11B.1.10.000018
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.1010.01
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.1100.090909
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.1110.014706
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.1320.014925
ORF1ab/nsp5A-B96P96HcCtcAt11B.1.1.1980.001468
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.2140.000055
ORF1ab/nsp5A-B96P96PccTccC11B.1.1.2220.000204
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.250.000569
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.2570.009709
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.2790.001121
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.3060.000438
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.3110.000358
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.3120.001912
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.3170.000412
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.3170.000412
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.3180.000302
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.330.000421
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.3620.005618
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.370.000193
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.3880.045455
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.390.00051
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.4090.002833
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.4090.002833
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.4130.006897
ORF1ab/nsp5A-B96P96delCCT---11B.1.1.4200.001006
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.4340.000349
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.4420.018519
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.500.000679
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.5180.006329
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.5250.005464
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1.630.000386
ORF1ab/nsp5A-B96P96RcCtcGt11B.1.1.70.000001
ORF1ab/nsp5A-B96P96SCctTct11B.1.1.700.000341
ORF1ab/nsp5A-B96P96SCctTct11B.1.110.30.000718
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1570.002985
ORF1ab/nsp5A-B96P96SCctTct11B.1.1660.008475
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.1690.014925
ORF1ab/nsp5A-B96P96SCctTct11B.1.1700.00431
ORF1ab/nsp5A-B96P96PccTccA11B.1.1770.000013
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.160.000664
ORF1ab/nsp5A-B96P96delCCT---11B.1.177.180.00116
ORF1ab/nsp5A-B96P96HcCtcAt11B.1.177.40.000211
ORF1ab/nsp5A-B96P96delCCT---11B.1.177.40.000211
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.440.000519
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.50.001242
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.60.000977
ORF1ab/nsp5A-B96P96SCctTct11B.1.177.600.000218
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.730.000566
ORF1ab/nsp5A-B96P96SCctTct11B.1.177.770.000726
ORF1ab/nsp5A-B96P96SCctTct11B.1.177.80.000752
ORF1ab/nsp5A-B96P96SCctTct11B.1.177.810.000189
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.177.870.000728
ORF1ab/nsp5A-B96P96HcCtcAt11B.1.20.000009
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.214.20.0006
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.2210.000071
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.2400.000216
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.2410.000812
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.2430.00007
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.258.70.001912
ORF1ab/nsp5A-B96P96SCctTct11B.1.2800.007143
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.2980.002114
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.3200.001245
ORF1ab/nsp5A-B96P96SCctTct11B.1.3360.002439
ORF1ab/nsp5A-B96P96SCctTct11B.1.36.190.009259
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.36.70.004
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.3770.004566
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.4010.008197
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.4250.002994
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ORF1ab/nsp5A-B96P96LcCtcTt11B.1.4270.00005
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.428.20.033333
ORF1ab/nsp5A-B96P96SCctTct11B.1.438.10.000107
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.4620.007246
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.4990.00105
ORF1ab/nsp5A-B96P96SCctTct11B.1.4990.00105
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.5090.000866
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.5170.000427
ORF1ab/nsp5A-B96P96SCctTct11B.1.5210.004975
ORF1ab/nsp5A-B96P96SCctTct11B.1.5250.000113
ORF1ab/nsp5A-B96P96del1Cct-ct11B.1.5260.000024
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.5580.004566
ORF1ab/nsp5A-B96P96SCctTct11B.1.5750.000303
ORF1ab/nsp5A-B96P96SCctTct11B.1.575.20.004808
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.5760.000907
ORF1ab/nsp5A-B96P96SCctTct11B.1.5820.000491
ORF1ab/nsp5A-B96P96SCctTct11B.1.5950.000261
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.5950.000261
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.6090.000479
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ORF1ab/nsp5A-B96P96QcCTcAA11B.1.617.20.000004
ORF1ab/nsp5A-B96P96SCctTct11B.1.6210.000089
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.6230.000536
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.6280.000352
ORF1ab/nsp5A-B96P96SCctTct11B.1.6280.000352
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.6360.006711
ORF1ab/nsp5A-B96P96SCctTct11B.1.9.50.005682
ORF1ab/nsp5A-B96P96SCctTct11B.1.930.000934
ORF1ab/nsp5A-B96P96LcCtcTt11B.1.940.027027
ORF1ab/nsp5A-B96P96HcCtcAt11B.280.003279
ORF1ab/nsp5A-B96P96SCctTct11B.4.80.071429
ORF1ab/nsp5A-B96P96LcCtcTt11B.470.020408
ORF1ab/nsp5A-B96P96HcCtcAt11B.6.60.000889
ORF1ab/nsp5A-B96P96TCctAct11B.600.015873
ORF1ab/nsp5A-B96P96SCctTct11C.1.20.004255
ORF1ab/nsp5A-B96P96delCCT---11C.350.000774
ORF1ab/nsp5A-B96P96LcCtcTt11C.370.000116
ORF1ab/nsp5A-B96P96LcCtcTt11C.40.01
ORF1ab/nsp5A-B96P96LcCtcTt11C.60.037037
ORF1ab/nsp5A-B96P96SCctTct11D.20.000075
ORF1ab/nsp5A-B96P96LcCtcTt11D.20.000075
ORF1ab/nsp5A-B96P96delCCT---11N.40.004255
ORF1ab/nsp5A-B96P96LcCtcTt11P.1.10.000318
ORF1ab/nsp5A-B96P96SCctTct11P.1.10.000318
ORF1ab/nsp5A-B96P96SCctTct11P.1.120.000484
ORF1ab/nsp5A-B96P96SCctTct11P.1.130.000898
ORF1ab/nsp5A-B96P96HcCtcAt11P.1.150.000232
ORF1ab/nsp5A-B96P96TCctAct11P.1.17.10.000875
ORF1ab/nsp5A-B96P96SCctTct11P.1.70.000319
ORF1ab/nsp5A-B96P96SCctTct11Q.10.000126
ORF1ab/nsp5A-B96P96delCCT---11Q.20.000613
ORF1ab/nsp5A-B96P96SCctTct11Q.80.000165