CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 90

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B90K90RK3353RnonsynaAgaGg1178001177580.99964310322-10324
ORF1ab/nsp5A-B90K90RK3353RnonsynaAGaGA117800420.00035653710322-10324
ORF1ab/nsp5A-B90K90NK3353NnonsynaaGaaT307307110322-10324
ORF1ab/nsp5A-B90K90KK3353KsynaaGaaA275275110322-10324
ORF1ab/nsp5A-B90K90delK3353deldelAAG---2424110322-10324
ORF1ab/nsp5A-B90K90GK3353GnonsynAAgGGg77110322-10324
ORF1ab/nsp5A-B90K90TK3353TnonsynaAgaCg430.7510322-10324
ORF1ab/nsp5A-B90K90TK3353TnonsynaAGaCA410.2510322-10324
ORF1ab/nsp5A-B90K90MK3353MnonsynaAgaTg33110322-10324
ORF1ab/nsp5A-B90K90YK3353YnonsynAaGTaT33110322-10324
ORF1ab/nsp5A-B90K90XK3353XnonsynAagTag320.66666710322-10324
ORF1ab/nsp5A-B90K90XK3353XnonsynAaGTaA310.33333310322-10324
ORF1ab/nsp5A-B90K90CK3353CnonsynAAGTGT22110322-10324
ORF1ab/nsp5A-B90K90SK3353SnonsynaAGaGT22110322-10324
ORF1ab/nsp5A-B90K90del1K3353del1delAag-ag22110322-10324
ORF1ab/nsp5A-B90K90EK3353EnonsynAagGag22110322-10324
ORF1ab/nsp5A-B90K90PK3353PnonsynAAgCCg11110322-10324
ORF1ab/nsp5A-B90K90del2K3353del2delaAGa--11110322-10324

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B90K90RaAgaGg117758117800All0.022523
ORF1ab/nsp5A-B90K90RaAGaGA42117800All0.000008
ORF1ab/nsp5A-B90K90RaAgaGg3310033134B.1.3510.983948
ORF1ab/nsp5A-B90K90RaAGaGA3433134B.1.3510.001011
ORF1ab/nsp5A-B90K90RaAgaGg1581915819B.1.1.70.014162
ORF1ab/nsp5A-B90K90RaAgaGg76317631AY.40.011877
ORF1ab/nsp5A-B90K90RaAgaGg62056205AY.1130.883526
ORF1ab/nsp5A-B90K90RaAgaGg32953295B.1.351.20.996974
ORF1ab/nsp5A-B90K90RaAgaGg31173117AY.700.649917
ORF1ab/nsp5A-B90K90RaAgaGg30493049B.10.027927
ORF1ab/nsp5A-B90K90RaAgaGg29652965AY.1020.078614
ORF1ab/nsp5A-B90K90RaAgaGg24832483B.1.5610.985709
ORF1ab/nsp5A-B90K90RaAgaGg24402440AY.1200.090716
ORF1ab/nsp5A-B90K90RaAgaGg19971997B.1.5820.979882
ORF1ab/nsp5A-B90K90RaAgaGg19461946AY.46.40.320118
ORF1ab/nsp5A-B90K90RaAgaGg17831783B.1.617.20.006714
ORF1ab/nsp5A-B90K90RaAgaGg16581658B.1.351.50.994005
ORF1ab/nsp5A-B90K90RaAgaGg12711271P.10.020023
ORF1ab/nsp5A-B90K90RaAgaGg11391139B.1.351.30.998247
ORF1ab/nsp5A-B90K90RaAgaGg10401040AY.440.00633
ORF1ab/nsp5A-B90K90RaAgaGg979979AY.290.015442
ORF1ab/nsp5A-B90K90RaAgaGg963963AY.430.004267
ORF1ab/nsp5A-B90K90RaAgaGg887887B.1.5680.985556
ORF1ab/nsp5A-B90K90RaAgaGg881882AY.1030.00547
ORF1ab/nsp5A-B90K90RaAGaGA1882AY.1030.000006
ORF1ab/nsp5A-B90K90RaAgaGg831831B.1.177.180.964037
ORF1ab/nsp5A-B90K90RaAgaGg824824B.1.36.220.995169
ORF1ab/nsp5A-B90K90RaAgaGg764764B.1.4040.994792
ORF1ab/nsp5A-B90K90RaAgaGg755762B.1.3610.972938
ORF1ab/nsp5A-B90K90RaAGaGA7762B.1.3610.009021
ORF1ab/nsp5A-B90K90RaAgaGg759759Q.30.11008
ORF1ab/nsp5A-B90K90RaAgaGg667667AY.250.004012
ORF1ab/nsp5A-B90K90RaAgaGg652652AY.390.016112
ORF1ab/nsp5A-B90K90RaAgaGg535535AY.420.021523
ORF1ab/nsp5A-B90K90RaAgaGg521521B.1.10.009451
ORF1ab/nsp5A-B90K90RaAgaGg490490AY.730.326015
ORF1ab/nsp5A-B90K90RaAgaGg463463B.1.36.211
ORF1ab/nsp5A-B90K90RaAgaGg412412B.1.6250.969412
ORF1ab/nsp5A-B90K90RaAgaGg404404AY.30.004018
ORF1ab/nsp5A-B90K90RaAgaGg402402B.1.5260.009449
ORF1ab/nsp5A-B90K90RaAgaGg377377AY.9.20.013847
ORF1ab/nsp5A-B90K90RaAgaGg374374B.1.6120.992042
ORF1ab/nsp5A-B90K90RaAgaGg368368B.1.2580.024489
ORF1ab/nsp5A-B90K90RaAgaGg359359B.1.4290.008447
ORF1ab/nsp5A-B90K90RaAgaGg332332B.1.4270.016765
ORF1ab/nsp5A-B90K90RaAgaGg319319B.1.1.5190.012668
ORF1ab/nsp5A-B90K90NaaGaaT307307All0.000059
ORF1ab/nsp5A-B90K90RaAgaGg304304B.1.36.360.183022
ORF1ab/nsp5A-B90K90RaAgaGg288288B.1.1770.003792
ORF1ab/nsp5A-B90K90RaAgaGg284284B.1.1600.008857
ORF1ab/nsp5A-B90K90RaAgaGg281281AY.330.018765
ORF1ab/nsp5A-B90K90KaaGaaA275275All0.000053
ORF1ab/nsp5A-B90K90RaAgaGg259259AY.60.010652
ORF1ab/nsp5A-B90K90RaAgaGg255255B.1.1.3290.980769
ORF1ab/nsp5A-B90K90RaAgaGg253253B.1.2790.129944
ORF1ab/nsp5A-B90K90RaAgaGg234234AY.470.007279
ORF1ab/nsp5A-B90K90RaAgaGg217217AY.1140.05015
ORF1ab/nsp5A-B90K90RaAgaGg200200AD.20.043792
ORF1ab/nsp5A-B90K90KaaGaaA182182AY.260.005152
ORF1ab/nsp5A-B90K90RaAgaGg170170AY.1190.006002
ORF1ab/nsp5A-B90K90RaAgaGg168168AY.750.009412
ORF1ab/nsp5A-B90K90RaAgaGg168168P.1.10.053367
ORF1ab/nsp5A-B90K90RaAgaGg162162AY.50.003345
ORF1ab/nsp5A-B90K90RaAgaGg153153AY.200.005946
ORF1ab/nsp5A-B90K90RaAgaGg153153AY.260.004331
ORF1ab/nsp5A-B90K90RaAgaGg153153B.1.5730.932927
ORF1ab/nsp5A-B90K90RaAgaGg151151AY.460.015716
ORF1ab/nsp5A-B90K90RaAgaGg148148C.370.017177
ORF1ab/nsp5A-B90K90RaAgaGg144144AY.830.248276
ORF1ab/nsp5A-B90K90RaAgaGg141141AY.4.20.003058
ORF1ab/nsp5A-B90K90RaAgaGg141141B.1.5800.573171
ORF1ab/nsp5A-B90K90RaAgaGg138138AY.450.016792
ORF1ab/nsp5A-B90K90RaAgaGg133133B.1.1.5260.471631
ORF1ab/nsp5A-B90K90RaAgaGg125125AY.39.10.004952
ORF1ab/nsp5A-B90K90RaAgaGg124124B.1.1.3480.098726
ORF1ab/nsp5A-B90K90RaAgaGg120120B.1.1110.141011
ORF1ab/nsp5A-B90K90RaAgaGg116116B.1.258.110.045977
ORF1ab/nsp5A-B90K90RaAgaGg112112C.350.086687
ORF1ab/nsp5A-B90K90RaAgaGg111111B.1.6210.009826
ORF1ab/nsp5A-B90K90RaAgaGg109109AY.540.010393
ORF1ab/nsp5A-B90K90RaAgaGg107107B.1.20.000942
ORF1ab/nsp5A-B90K90RaAgaGg101101B.1.1.280.031435
ORF1ab/nsp5A-B90K90RaAgaGg9494B.1.5230.230392
ORF1ab/nsp5A-B90K90RaAgaGg9393Q.80.015336
ORF1ab/nsp5A-B90K90RaAgaGg9191AY.140.008009
ORF1ab/nsp5A-B90K90RaAgaGg9191AY.4.2.10.013558
ORF1ab/nsp5A-B90K90RaAgaGg9191B.1.177.540.055185
ORF1ab/nsp5A-B90K90RaAgaGg8989B.1.5810.839623
ORF1ab/nsp5A-B90K90RaAgaGg8787AY.1000.004003
ORF1ab/nsp5A-B90K90RaAgaGg8585B.1.1.2820.988372
ORF1ab/nsp5A-B90K90RaAgaGg8383AY.98.10.00402
ORF1ab/nsp5A-B90K90RaAgaGg8383B.1.1.500.056348
ORF1ab/nsp5A-B90K90RaAgaGg8282AY.1170.00693
ORF1ab/nsp5A-B90K90RaAgaGg8181AY.670.037604
ORF1ab/nsp5A-B90K90RaAgaGg8080P.1.140.003824
ORF1ab/nsp5A-B90K90RaAgaGg7777P.1.150.01789
ORF1ab/nsp5A-B90K90RaAgaGg7676R.10.006841
ORF1ab/nsp5A-B90K90RaAgaGg7474P.1.70.023627
ORF1ab/nsp5A-B90K90RaAgaGg7373B.1.2430.00508
ORF1ab/nsp5A-B90K90RaAgaGg7272B.1.438.10.007723
ORF1ab/nsp5A-B90K90RaAgaGg7171B.1.2210.005043
ORF1ab/nsp5A-B90K90RaAgaGg6969B.1.243.21
ORF1ab/nsp5A-B90K90RaAgaGg6666AY.900.045175
ORF1ab/nsp5A-B90K90RaAgaGg6464B.1.1.3510.178771
ORF1ab/nsp5A-B90K90RaAgaGg6464P.1.100.017246
ORF1ab/nsp5A-B90K90RaAgaGg6363B.1.2340.008312
ORF1ab/nsp5A-B90K90RaAgaGg6363B.1.5250.007129
ORF1ab/nsp5A-B90K90RaAgaGg6262B.1.1.3170.025525
ORF1ab/nsp5A-B90K90RaAgaGg6161B.1.5240.085795
ORF1ab/nsp5A-B90K90RaAgaGg6060B.1.1.2220.01224
ORF1ab/nsp5A-B90K90RaAgaGg6060B.1.1.3550.923077
ORF1ab/nsp5A-B90K90RaAgaGg5858B.1.5750.017597
ORF1ab/nsp5A-B90K90RaAgaGg5353AY.230.003697
ORF1ab/nsp5A-B90K90RaAgaGg5353AY.610.005553
ORF1ab/nsp5A-B90K90RaAgaGg5151AY.99.20.0047
ORF1ab/nsp5A-B90K90RaAgaGg5050C.140.21645
ORF1ab/nsp5A-B90K90RaAgaGg4949B.1.5960.00427
ORF1ab/nsp5A-B90K90RaAgaGg4848P.1.170.007764
ORF1ab/nsp5A-B90K90RaAgaGg4747AY.360.006966
ORF1ab/nsp5A-B90K90RaAgaGg4747AY.990.049318
ORF1ab/nsp5A-B90K90RaAgaGg4747B.1.1.3750.559524
ORF1ab/nsp5A-B90K90RaAgaGg4545XA1
ORF1ab/nsp5A-B90K90RaAgaGg4444AY.46.30.041083
ORF1ab/nsp5A-B90K90RaAgaGg4444B.1.1.2650.138801
ORF1ab/nsp5A-B90K90RaAgaGg4444B.1.1.4181
ORF1ab/nsp5A-B90K90RaAgaGg4343AY.690.008027
ORF1ab/nsp5A-B90K90RaAgaGg4343B.1.1.3060.018851
ORF1ab/nsp5A-B90K90RaAgaGg4343B.1.177.100.037752
ORF1ab/nsp5A-B90K90RaAgaGg4343B.1.617.10.005546
ORF1ab/nsp5A-B90K90RaAgaGg4242P.20.007839
ORF1ab/nsp5A-B90K90RaAgaGg4040AY.270.002589
ORF1ab/nsp5A-B90K90RaAgaGg3939B.1.1.4320.049367
ORF1ab/nsp5A-B90K90RaAgaGg3939B.1.6370.00285
ORF1ab/nsp5A-B90K90RaAgaGg3838AY.4.50.004085
ORF1ab/nsp5A-B90K90RaAgaGg3838AY.9.10.003182
ORF1ab/nsp5A-B90K90RaAgaGg3737AY.530.010638
ORF1ab/nsp5A-B90K90RaAgaGg3737B.1.1.250.021035
ORF1ab/nsp5A-B90K90RaAgaGg3737B.1.1.3280.627119
ORF1ab/nsp5A-B90K90RaAgaGg3636Q.10.004548
ORF1ab/nsp5A-B90K90RaAgaGg3535AY.120.011062
ORF1ab/nsp5A-B90K90RaAgaGg3535AY.46.60.002527
ORF1ab/nsp5A-B90K90NaaGaaT3535B.1.10.000635
ORF1ab/nsp5A-B90K90RaAgaGg3535B.1.177.600.007645
ORF1ab/nsp5A-B90K90RaAgaGg3434AY.980.002686
ORF1ab/nsp5A-B90K90RaAgaGg3434B.1.1.2140.001886
ORF1ab/nsp5A-B90K90RaAgaGg3333B.1.1.4340.011502
ORF1ab/nsp5A-B90K90RaAgaGg3333B.1.36.290.017072
ORF1ab/nsp5A-B90K90RaAgaGg3232AY.1180.002005
ORF1ab/nsp5A-B90K90RaAgaGg3232B.1.1.2550.09697
ORF1ab/nsp5A-B90K90RaAgaGg3232B.1.177.810.006058
ORF1ab/nsp5A-B90K90RaAgaGg3232B.1.3240.051364
ORF1ab/nsp5A-B90K90RaAgaGg3131B.1.1.2160.027605
ORF1ab/nsp5A-B90K90RaAgaGg3030B.1.1.2070.035461
ORF1ab/nsp5A-B90K90RaAgaGg2929AY.740.003354
ORF1ab/nsp5A-B90K90RaAgaGg2929B.1.1.1191
ORF1ab/nsp5A-B90K90RaAgaGg2929B.1.1.3110.010387
ORF1ab/nsp5A-B90K90RaAgaGg2929B.1.6200.027436
ORF1ab/nsp5A-B90K90RaAgaGg2828AY.1210.003789
ORF1ab/nsp5A-B90K90RaAgaGg2828B.1.1.330.011785
ORF1ab/nsp5A-B90K90RaAgaGg2828B.1.564.10.044164
ORF1ab/nsp5A-B90K90RaAgaGg2828B.400.0102
ORF1ab/nsp5A-B90K90RaAgaGg2727AY.340.002618
ORF1ab/nsp5A-B90K90RaAgaGg2727AY.34.10.013768
ORF1ab/nsp5A-B90K90RaAgaGg2727P.1.120.013069
ORF1ab/nsp5A-B90K90RaAgaGg2626AY.5.30.008772
ORF1ab/nsp5A-B90K90RaAgaGg2626AY.840.011374
ORF1ab/nsp5A-B90K90RaAgaGg2626B.1.1.440.062651
ORF1ab/nsp5A-B90K90RaAgaGg2626B.1.351.11
ORF1ab/nsp5A-B90K90RaAgaGg2525AY.1090.018491
ORF1ab/nsp5A-B90K90NaaGaaT2525AY.40.000039
ORF1ab/nsp5A-B90K90RaAgaGg2525B.1.1.3330.026911
ORF1ab/nsp5A-B90K90RaAgaGg2525B.1.1700.107759
ORF1ab/nsp5A-B90K90RaAgaGg2525C.160.026511
ORF1ab/nsp5A-B90K90delAAG---2424All0.000005
ORF1ab/nsp5A-B90K90RaAgaGg2424B.1.1.3190.421053
ORF1ab/nsp5A-B90K90RaAgaGg2424B.1.177.730.01359
ORF1ab/nsp5A-B90K90RaAgaGg2424B.1.221.30.02
ORF1ab/nsp5A-B90K90RaAgaGg2424B.1.2410.019481
ORF1ab/nsp5A-B90K90RaAgaGg2323AY.120.10.007384
ORF1ab/nsp5A-B90K90RaAgaGg2323AY.410.006761
ORF1ab/nsp5A-B90K90RaAgaGg2323B.1.1.10.007514
ORF1ab/nsp5A-B90K90NaaGaaT2323B.1.617.20.000087
ORF1ab/nsp5A-B90K90RaAgaGg2222AY.1110.004029
ORF1ab/nsp5A-B90K90RaAgaGg2222AY.920.00632
ORF1ab/nsp5A-B90K90RaAgaGg2222B0.002812
ORF1ab/nsp5A-B90K90NaaGaaT2222B.1.1.70.00002
ORF1ab/nsp5A-B90K90RaAgaGg2222B.1.1.700.007503
ORF1ab/nsp5A-B90K90RaAgaGg2222B.1.258.170.002287
ORF1ab/nsp5A-B90K90NaaGaaT2020AY.1030.000124
ORF1ab/nsp5A-B90K90RaAgaGg2020AY.320.01065
ORF1ab/nsp5A-B90K90RaAgaGg2020B.1.1.630.007716
ORF1ab/nsp5A-B90K90RaAgaGg2020B.1.2400.004311
ORF1ab/nsp5A-B90K90RaAgaGg2020B.1.3490.014296
ORF1ab/nsp5A-B90K90RaAgaGg2020B.1.360.002918
ORF1ab/nsp5A-B90K90RaAgaGg2020B.330.425532
ORF1ab/nsp5A-B90K90RaAgaGg2020B.6.60.017778
ORF1ab/nsp5A-B90K90RaAgaGg1919B.1.1.390.009684
ORF1ab/nsp5A-B90K90RaAgaGg1818AY.75.10.003246
ORF1ab/nsp5A-B90K90NaaGaaT1818B.10.000165
ORF1ab/nsp5A-B90K90RaAgaGg1818B.1.1.2860.052174
ORF1ab/nsp5A-B90K90RaAgaGg1717AY.90.001149
ORF1ab/nsp5A-B90K90RaAgaGg1717B.1.1.2840.001826
ORF1ab/nsp5A-B90K90RaAgaGg1717B.1.36.170.008399
ORF1ab/nsp5A-B90K90RaAgaGg1616AY.1010.007847
ORF1ab/nsp5A-B90K90RaAgaGg1616AY.1160.004588
ORF1ab/nsp5A-B90K90RaAgaGg1616AY.3.10.001364
ORF1ab/nsp5A-B90K90RaAgaGg1616AY.5.40.004427
ORF1ab/nsp5A-B90K90RaAgaGg1616B.1.1.3180.004828
ORF1ab/nsp5A-B90K90RaAgaGg1616B.1.177.70.002638
ORF1ab/nsp5A-B90K90RaAgaGg1515A.23.10.010563
ORF1ab/nsp5A-B90K90RaAgaGg1515AY.180.151515
ORF1ab/nsp5A-B90K90RaAgaGg1515B.1.1.2730.101351
ORF1ab/nsp5A-B90K90RaAgaGg1515B.1.1.3690.006693
ORF1ab/nsp5A-B90K90RaAgaGg1515B.1.177.440.007784
ORF1ab/nsp5A-B90K90RaAgaGg1515B.1.6380.789474
ORF1ab/nsp5A-B90K90RaAgaGg1515C.36.30.008508
ORF1ab/nsp5A-B90K90RaAgaGg1515D.20.001126
ORF1ab/nsp5A-B90K90RaAgaGg1414B.1.3690.003993
ORF1ab/nsp5A-B90K90RaAgaGg1414B.1.4780.164706
ORF1ab/nsp5A-B90K90RaAgaGg1414B.1.6340.047945
ORF1ab/nsp5A-B90K90RaAgaGg1313AY.16.10.006109
ORF1ab/nsp5A-B90K90RaAgaGg1313AY.850.005553
ORF1ab/nsp5A-B90K90RaAgaGg1313B.1.177.40.002744
ORF1ab/nsp5A-B90K90RaAgaGg1313B.1.177.850.070652
ORF1ab/nsp5A-B90K90RaAgaGg1313B.1.4700.018258
ORF1ab/nsp5A-B90K90RaAgaGg1313B.1.5950.003392
ORF1ab/nsp5A-B90K90RaAgaGg1313B.1.6280.004581
ORF1ab/nsp5A-B90K90RaAgaGg1212A.20.007942
ORF1ab/nsp5A-B90K90RaAgaGg1212AY.1060.004019
ORF1ab/nsp5A-B90K90RaAgaGg1212AY.160.004556
ORF1ab/nsp5A-B90K90RaAgaGg1212AY.380.005991
ORF1ab/nsp5A-B90K90RaAgaGg1212AY.680.003285
ORF1ab/nsp5A-B90K90RaAgaGg1212AY.710.005701
ORF1ab/nsp5A-B90K90RaAgaGg1212AY.940.005312
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ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1.3370.007194
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1.3390.021053
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1.3680.006173
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1.3740.004751
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1.4030.051282
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1.4850.033333
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1.5210.010695
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1.540.006042
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1.570.022989
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1.710.012121
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.130.004751
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.1570.00597
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.160.330.00885
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.160.80.002577
ORF1ab/nsp5A-B90K90delAAG---22B.1.1770.000026
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.177.170.001642
ORF1ab/nsp5A-B90K90NaaGaaT22B.1.177.190.002861
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.177.230.006472
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.177.30.015267
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.177.350.001382
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.177.360.032258
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.177.690.002967
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.177.750.002081
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.177.870.001456
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.2140.007326
ORF1ab/nsp5A-B90K90NaaGaaT22B.1.2430.000139
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.258.30.00335
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.3360.004878
ORF1ab/nsp5A-B90K90NaaGaaT22B.1.3490.00143
ORF1ab/nsp5A-B90K90NaaGaaT22B.1.360.000292
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.36.260.005714
ORF1ab/nsp5A-B90K90NaaGaaT22B.1.36.290.001035
ORF1ab/nsp5A-B90K90NaaGaaT22B.1.36.390.004435
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.3700.016
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.3980.005952
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.4250.005988
ORF1ab/nsp5A-B90K90NaaGaaT22B.1.4280.002041
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.5010.014706
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.5090.001732
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.5160.003914
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.5330.019231
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.5420.0625
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.5510.002581
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.6000.011696
ORF1ab/nsp5A-B90K90NaaGaaT22B.1.6370.000146
ORF1ab/nsp5A-B90K90RaAgaGg22B.1.910.004149
ORF1ab/nsp5A-B90K90RaAgaGg22B.520.020202
ORF1ab/nsp5A-B90K90RaAgaGg22C.1.20.008511
ORF1ab/nsp5A-B90K90NaaGaaT22D.20.00015
ORF1ab/nsp5A-B90K90RaAgaGg22K.10.047619
ORF1ab/nsp5A-B90K90RaAgaGg22K.20.08
ORF1ab/nsp5A-B90K90RaAgaGg22L.30.007092
ORF1ab/nsp5A-B90K90RaAgaGg22N.90.011905
ORF1ab/nsp5A-B90K90RaAgaGg22P.1.40.001953
ORF1ab/nsp5A-B90K90RaAgaGg22P.70.008734
ORF1ab/nsp5A-B90K90RaAgaGg22V.20.064516
ORF1ab/nsp5A-B90K90RaAgaGg11A.2.5.20.001572
ORF1ab/nsp5A-B90K90RaAgaGg11AA.10.007246
ORF1ab/nsp5A-B90K90RaAgaGg11AA.70.009174
ORF1ab/nsp5A-B90K90RaAgaGg11AD.10.004115
ORF1ab/nsp5A-B90K90RaAgaGg11AE.10.011364
ORF1ab/nsp5A-B90K90RaAgaGg11AE.70.083333
ORF1ab/nsp5A-B90K90RaAgaGg11AE.80.000489
ORF1ab/nsp5A-B90K90RaAgaGg11AH.20.012048
ORF1ab/nsp5A-B90K90PAAgCCg11All0
ORF1ab/nsp5A-B90K90del2aAGa--11All0
ORF1ab/nsp5A-B90K90RaAgaGg11AP.10.001502
ORF1ab/nsp5A-B90K90RaAgaGg11AT.10.005128
ORF1ab/nsp5A-B90K90KaaGaaA11AY.1000.000046
ORF1ab/nsp5A-B90K90RaAgaGg11AY.1040.001984
ORF1ab/nsp5A-B90K90NaaGaaT11AY.1080.001103
ORF1ab/nsp5A-B90K90NaaGaaT11AY.1110.000183
ORF1ab/nsp5A-B90K90KaaGaaA11AY.1130.000142
ORF1ab/nsp5A-B90K90GAAgGGg11AY.1130.000142
ORF1ab/nsp5A-B90K90NaaGaaT11AY.1170.000085
ORF1ab/nsp5A-B90K90KaaGaaA11AY.120.000316
ORF1ab/nsp5A-B90K90NaaGaaT11AY.120.000316
ORF1ab/nsp5A-B90K90RaAgaGg11AY.170.008197
ORF1ab/nsp5A-B90K90RaAgaGg11AY.20.000356
ORF1ab/nsp5A-B90K90NaaGaaT11AY.200.000039
ORF1ab/nsp5A-B90K90MaAgaTg11AY.250.000006
ORF1ab/nsp5A-B90K90GAAgGGg11AY.250.000006
ORF1ab/nsp5A-B90K90NaaGaaT11AY.290.000016
ORF1ab/nsp5A-B90K90RaAgaGg11AY.310.018519
ORF1ab/nsp5A-B90K90NaaGaaT11AY.4.20.000022
ORF1ab/nsp5A-B90K90delAAG---11AY.4.50.000107
ORF1ab/nsp5A-B90K90RaAgaGg11AY.400.000964
ORF1ab/nsp5A-B90K90KaaGaaA11AY.430.000004
ORF1ab/nsp5A-B90K90delAAG---11AY.430.000004
ORF1ab/nsp5A-B90K90GAAgGGg11AY.430.000004
ORF1ab/nsp5A-B90K90KaaGaaA11AY.440.000006
ORF1ab/nsp5A-B90K90GAAgGGg11AY.46.40.000165
ORF1ab/nsp5A-B90K90KaaGaaA11AY.50.000021
ORF1ab/nsp5A-B90K90RaAgaGg11AY.5.10.003759
ORF1ab/nsp5A-B90K90NaaGaaT11AY.5.40.000277
ORF1ab/nsp5A-B90K90NaaGaaT11AY.530.000288
ORF1ab/nsp5A-B90K90NaaGaaT11AY.540.000095
ORF1ab/nsp5A-B90K90RaAgaGg11AY.600.000938
ORF1ab/nsp5A-B90K90RaAgaGg11AY.660.00107
ORF1ab/nsp5A-B90K90delAAG---11AY.670.000464
ORF1ab/nsp5A-B90K90RaAgaGg11AY.7.20.000559
ORF1ab/nsp5A-B90K90RaAgaGg11AY.720.001361
ORF1ab/nsp5A-B90K90RaAgaGg11AY.760.004831
ORF1ab/nsp5A-B90K90RaAgaGg11AY.820.001357
ORF1ab/nsp5A-B90K90KaaGaaA11AY.9.10.000084
ORF1ab/nsp5A-B90K90NaaGaaT11AY.9.20.000037
ORF1ab/nsp5A-B90K90RaAgaGg11AY.9.2.10.001976
ORF1ab/nsp5A-B90K90RaAgaGg11AY.91.10.004065
ORF1ab/nsp5A-B90K90RaAgaGg11AY.99.10.001553
ORF1ab/nsp5A-B90K90delAAG---11AY.99.10.001553
ORF1ab/nsp5A-B90K90RaAgaGg11AZ.20.000821
ORF1ab/nsp5A-B90K90NaaGaaT11AZ.30.00152
ORF1ab/nsp5A-B90K90RaAgaGg11AZ.50.003509
ORF1ab/nsp5A-B90K90PAAgCCg11B.10.000009
ORF1ab/nsp5A-B90K90del1Aag-ag11B.10.000009
ORF1ab/nsp5A-B90K90KaaGaaA11B.1.10.000018
ORF1ab/nsp5A-B90K90delAAG---11B.1.10.000018
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.1.10.000327
ORF1ab/nsp5A-B90K90KaaGaaA11B.1.1.10.000327
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1010.01
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1170.009709
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1210.002427
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1320.014925
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1380.006061
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1440.028571
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1490.016393
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.150.013514
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.1.1530.001095
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1640.005155
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1760.000439
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.1.1760.000439
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1930.111111
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.1980.001468
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.2030.016949
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.1.2100.005714
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.2130.021739
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.1.2160.00089
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.2190.005
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.2290.005747
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.2310.003096
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.2400.004695
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.2540.011236
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.1.2770.000759
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.1.2840.000107
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.2880.001916
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3020.002075
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3050.003861
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3070.002532
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3090.005848
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3220.008772
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3240.052632
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3270.1
ORF1ab/nsp5A-B90K90GAAgGGg11B.1.1.3290.003846
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3360.016667
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.340.013158
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3430.020833
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3500.04
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3530.020833
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3730.02381
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3800.009804
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3880.045455
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3910.008547
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.3960.045455
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.1.40.002976
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.400.034483
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.4020.011111
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.4060.006494
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.4130.006897
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.4140.142857
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.4190.007407
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.4370.010417
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.4420.018519
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.4860.001577
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.490.017544
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.510.001718
ORF1ab/nsp5A-B90K90KaaGaaA11B.1.1.5190.00004
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.5240.020833
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.560.017857
ORF1ab/nsp5A-B90K90EAagGag11B.1.1.70.000001
ORF1ab/nsp5A-B90K90MaAgaTg11B.1.1.70.000001
ORF1ab/nsp5A-B90K90del2aAGa--11B.1.1.70.000001
ORF1ab/nsp5A-B90K90del1Aag-ag11B.1.1.70.000001
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.830.00271
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1.990.02381
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1270.002198
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1370.5
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1420.002899
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.1420.002899
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1430.021277
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1470.000756
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.160.140.002119
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.160.150.00495
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.160.170.001701
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.160.310.008065
ORF1ab/nsp5A-B90K90KaaGaaA11B.1.1770.000013
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.150.000631
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.177.160.000664
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.160.000664
ORF1ab/nsp5A-B90K90delAAG---11B.1.177.180.00116
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.260.006993
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.270.009434
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.330.001645
ORF1ab/nsp5A-B90K90delAAG---11B.1.177.40.000211
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.177.40.000211
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.430.001477
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.50.001242
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.177.520.001757
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.530.002392
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.560.000668
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.620.001192
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.650.000665
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.177.70.000165
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.760.002494
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.80.000752
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.820.000477
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.177.830.001481
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1820.007246
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.1900.01
ORF1ab/nsp5A-B90K90MaAgaTg11B.1.20.000009
ORF1ab/nsp5A-B90K90YAaGTaT11B.1.20.000009
ORF1ab/nsp5A-B90K90XAagTag11B.1.20.000009
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.214.30.007143
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.2220.001692
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.2370.004975
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.2400.000216
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.243.10.022222
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.2470.014925
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.2580.000067
ORF1ab/nsp5A-B90K90KaaGaaA11B.1.2580.000067
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.258.120.007874
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.2600.003344
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.2650.001271
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.30.002618
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.3010.005917
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.3050.002151
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.3200.001245
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.3370.005587
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.3400.004292
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.3500.002933
ORF1ab/nsp5A-B90K90GAAgGGg11B.1.3510.00003
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.36.20.010753
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.369.10.027027
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.370.014706
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.3830.009009
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.3950.007042
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.400.019608
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.4020.009804
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.4030.003268
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.4090.000781
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.4130.004255
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.4240.008065
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.4320.011236
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.4370.020833
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.4600.017857
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.4890.043478
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.4990.00105
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5170.000427
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5380.008065
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5400.009709
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5410.004425
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5500.013699
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5540.004405
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5560.007519
ORF1ab/nsp5A-B90K90NaaGaaT11B.1.5640.000426
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5670.003333
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5690.014493
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5700.002941
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5770.000687
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.5870.001898
ORF1ab/nsp5A-B90K90XAagTag11B.1.5960.000087
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.596.10.009346
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.6020.006536
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.6100.003546
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.617.30.002985
ORF1ab/nsp5A-B90K90delAAG---11B.1.6210.000089
ORF1ab/nsp5A-B90K90TaAgaCg11B.1.6210.000089
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.810.021277
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.930.000934
ORF1ab/nsp5A-B90K90RaAgaGg11B.1.940.027027
ORF1ab/nsp5A-B90K90RaAgaGg11B.120.00641
ORF1ab/nsp5A-B90K90RaAgaGg11B.290.003509
ORF1ab/nsp5A-B90K90RaAgaGg11B.3.10.001658
ORF1ab/nsp5A-B90K90RaAgaGg11B.310.003731
ORF1ab/nsp5A-B90K90RaAgaGg11B.390.002331
ORF1ab/nsp5A-B90K90RaAgaGg11B.4.10.018868
ORF1ab/nsp5A-B90K90RaAgaGg11B.4.40.018868
ORF1ab/nsp5A-B90K90RaAgaGg11B.530.011765
ORF1ab/nsp5A-B90K90RaAgaGg11B.550.00295
ORF1ab/nsp5A-B90K90RaAgaGg11B.560.028571
ORF1ab/nsp5A-B90K90RaAgaGg11B.60.00091
ORF1ab/nsp5A-B90K90RaAgaGg11B.610.005747
ORF1ab/nsp5A-B90K90RaAgaGg11C.110.010638
ORF1ab/nsp5A-B90K90RaAgaGg11C.230.005814
ORF1ab/nsp5A-B90K90RaAgaGg11C.290.0625
ORF1ab/nsp5A-B90K90RaAgaGg11C.300.001727
ORF1ab/nsp5A-B90K90TaAGaCA11C.350.000774
ORF1ab/nsp5A-B90K90XAaGTaA11C.350.000774
ORF1ab/nsp5A-B90K90RaAgaGg11C.36.10.004149
ORF1ab/nsp5A-B90K90RaAgaGg11C.36.3.10.002717
ORF1ab/nsp5A-B90K90EAagGag11C.370.000116
ORF1ab/nsp5A-B90K90GAAgGGg11C.370.000116
ORF1ab/nsp5A-B90K90RaAgaGg11C.60.037037
ORF1ab/nsp5A-B90K90RaAgaGg11K.30.006173
ORF1ab/nsp5A-B90K90delAAG---11N.40.004255
ORF1ab/nsp5A-B90K90NaaGaaT11P.1.120.000484
ORF1ab/nsp5A-B90K90RaAgaGg11P.1.50.076923
ORF1ab/nsp5A-B90K90RaAgaGg11P.1.80.004785