CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 89 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	89	L89F	L3352F	nonsyn	Ctt	Ttt	136477	136471	0.999956	10319-10321

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	136471	136477	All	0.026102
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	112311	112315	B.1.2	0.98894
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	10719	10719	B.1.596	0.934036
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3642	3642	B.1.595	0.950418
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3185	3185	B.1	0.029173
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1445	1445	B.1.577	0.993127
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1099	1099	B.1.588	1
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	529	529	B.1.1.7	0.000474
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	527	527	B.1.587	1
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	298	298	B.1.567	0.993333
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	285	285	B.1.1	0.00517
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	226	226	P.1	0.00356
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	170	170	B.1.595.1	0.994152
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	156	156	AY.4	0.000243
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	137	137	B.1.595.4	1
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	130	130	B.1.589	0.984848
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	112	112	AY.25	0.000674
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	94	94	B.1.591	1
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	70	71	B.1.617.2	0.000264
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	66	66	AY.47	0.002053
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	58	58	B.1.429	0.001365
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	49	49	B.1.177.73	0.027746
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	45	45	B.1.234	0.005937
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	43	43	B.1.1.519	0.001708
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	38	38	B.1.595.3	1
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	33	33	AY.103	0.000205
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	32	32	B.1.243	0.002227
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	32	32	B.1.580	0.130081
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	27	27	AY.43	0.00012
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	26	26	B.1.588.1	1
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	25	25	AY.20	0.000972
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	25	25	B.1.595.2	1
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	23	23	AY.39.1	0.000911
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	22	22	B.1.1.335	0.285714
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	22	22	B.1.369	0.006275
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	22	22	B.1.396	0.015526
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	20	20	B.1.160	0.000624
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	20	20	B.1.574	0.043011
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	20	20	P.1.17	0.003235
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	19	19	B.1.564	0.008092
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	18	18	AY.44	0.00011
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	17	17	B.1.576	0.015413
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	16	16	AY.3	0.000159
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	16	16	B.1.177	0.000211
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	14	14	B.1.111	0.016451
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	14	14	B.1.284	0.184211
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	12	12	AY.29	0.000189
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	12	12	B.1.311	0.003295
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	12	12	B.1.526	0.000282
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	11	11	B.1.1.348	0.008758
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	11	11	B.1.221	0.000781
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	10	10	B	0.001278
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	10	10	B.1.240	0.002156
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	9	9	AY.102	0.000239
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	8	8	B.1.177.21	0.000612
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	8	8	B.1.617.1	0.001032
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	8	8	B.1.621	0.000708
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	8	8	R.1	0.00072
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	7	7	AY.39	0.000173
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	7	7	B.1.206	0.00571
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	7	7	B.1.349	0.005004
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	7	7	B.1.367	0.005547
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	7	7	B.1.400	0.003003
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	6	6	AY.46.5	0.00119
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	6	6	B.1.1.409	0.016997
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	6	6	B.1.258	0.000399
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	6	6	B.1.375	0.004918
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	6	6	B.1.521	0.029851
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	5		0.222222
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	AY.33	0.000334
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	AY.93	0.001365
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	B.1.1.432	0.006329
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	B.1.1.507	0.043478
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	B.1.139	0.003666
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	B.1.177.60	0.001092
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	B.1.427	0.000252
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	B.1.517	0.002135
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	B.1.575	0.001517
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	B.1.590	0.022727
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	B.1.606	0.03012
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	5	5	P.1.14	0.000239
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	AY.75.1	0.000721
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	B.1.1.312	0.007648
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	B.1.1.50	0.002716
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	B.1.157	0.01194
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	B.1.210	0.008529
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	B.1.36.8	0.004
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	B.1.438	0.026144
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	B.1.524	0.005626
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	C.23	0.023256
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	C.37	0.000464
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	P.1.15	0.000929
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	4	4	P.2	0.000747
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	AY.100	0.000138
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	AY.119	0.000106
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	AY.23	0.000209
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	AY.3.1	0.000256
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	AY.4.2	0.000065
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	AY.46.1	0.00308
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	AY.48	0.001395
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	AY.5	0.000062
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	AY.9.2	0.00011
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.1.487	0.01676
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.160.16	0.002788
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.177.7	0.000495
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.324	0.004815
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.336	0.007317
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.351	0.000089
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.413	0.012766
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.509	0.002597
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.565	0.002431
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.569	0.043478
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.571	0.029126
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.581	0.028302
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	B.1.582	0.001472
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	C.36.3	0.001702
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	P.1.10	0.000808
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	P.1.12	0.001452
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	P.6	0.009434
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	3	3	Q.4	0.001364
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	AY.116	0.000574
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	AY.26	0.000057
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	AY.84	0.000875
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	AY.99.2	0.000184
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.1.1	0.000653
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.1.174	0.006757
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.1.220	0.003717
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.1.222	0.000408
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.1.231	0.006192
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.1.251	0.015873
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.1.28	0.000622
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.1.301	0.002358
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.1.306	0.000877
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.1.317	0.000823
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.128	0.001271
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.189	0.008584
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.214	0.007326
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.232	0.001075
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.265	0.002541
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.305	0.004301
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.306	0.011429
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.325	0.013793
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.330	0.057143
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.337	0.011173
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.340	0.008584
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.36	0.000292
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.361	0.002577
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.397	0.009709
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.448	0.005249
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.546	0.007407
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.550	0.027397
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.561	0.000794
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.568	0.002222
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.78	0.017094
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.1.88.1	0.009615
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.4.1	0.037736
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	B.6.6	0.001778
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	Q.1	0.000253
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	2	2	Q.8	0.00033
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	A	0.000387
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	A.1	0.000282
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	A.2.5	0.000499
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	A.2.5.2	0.001572
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	A.3	0.002096
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.1	0.000396
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.101	0.00049
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.114	0.000231
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.118	0.000063
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.12	0.000316
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.120.2	0.001285
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.121	0.000135
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.2	0.000356
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.30	0.000396
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.38	0.000499
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.4.3	0.000842
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.46	0.000104
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.46.6	0.000072
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.6	0.000041
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.61	0.000105
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.63	0.000387
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.69	0.000187
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.7.1	0.000113
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.74	0.000116
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.75	0.000056
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.82	0.001357
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.91	0.00073
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	AY.95	0.000761
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.161	0.003534
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.169	0.018182
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.189	0.001513
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.192	0.002309
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.198	0.001468
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.210	0.005714
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.214	0.000055
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.216	0.00089
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.230	0.009174
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.277	0.000759
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.318	0.000302
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.33	0.000421
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.334	0.016393
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.337	0.003597
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.350	0.04
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.362	0.005618
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.37	0.000193
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.370	0.012658
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.39	0.00051
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.402	0.011111
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.434	0.000349
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.44	0.00241
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.518	0.006329
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.528	0.004808
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.1.70	0.000341
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.110.3	0.000718
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.119	0.010526
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.126	0.001276
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.160.14	0.002119
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.177.16	0.000664
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.177.17	0.000821
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.177.56	0.000668
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.177.80	0.001912
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.211	0.025
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.236	0.002053
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.239	0.001221
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.241	0.000812
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.258.17	0.000104
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.264	0.012346
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.298	0.002114
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.354	0.043478
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.36.1	0.00114
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.36.10	0.004785
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.36.24	0.006173
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.36.36	0.000602
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.362	0.001541
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.366	0.004878
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.370	0.008
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.382	0.008929
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.395	0.007042
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.400.1	0.015152
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.404	0.001302
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.408	0.00369
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.417	0.028571
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.421	0.007463
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.423	0.010204
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.424	0.008065
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.432	0.011236
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.433	0.003195
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.437	0.020833
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.443	0.004673
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.450	0.011364
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.473	0.019231
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.487	0.019608
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.501	0.007353
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.541	0.004425
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.547	0.02439
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.551	0.00129
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.556	0.007519
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.566	0.019231
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.572	0.025
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.599	0.00365
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.602	0.006536
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.605	0.005952
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.609	0.000479
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.612	0.002653
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.623	0.000536
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.628	0.000352
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.637	0.000073
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.67	0.043478
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.1.81	0.021277
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.4	0.002208
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	B.45	0.003831
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	C.13	0.025641
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	C.16	0.00106
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	C.2.1	0.006667
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	C.35	0.000774
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	C.36	0.000911
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	C.37.1	0.002618
ORF1ab/nsp5A-B	89	L89F	Ctt	Ttt	1	1	P.1.1	0.000318

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.