CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 81

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B81S81FS3344FnonsyntCttTt118311820.99915510295-10297
ORF1ab/nsp5A-B81S81FS3344FnonsyntCTtTC118310.00084530910295-10297
ORF1ab/nsp5A-B81S81AS3344AnonsynTctGct4674660.99785910295-10297
ORF1ab/nsp5A-B81S81AS3344AnonsynTcTGcC46710.0021413310295-10297
ORF1ab/nsp5A-B81S81SS3344SsyntcTtcC1841280.69565210295-10297
ORF1ab/nsp5A-B81S81SS3344SsyntcTtcA184440.2391310295-10297
ORF1ab/nsp5A-B81S81SS3344SsyntcTtcG184120.065217410295-10297
ORF1ab/nsp5A-B81S81YS3344YnonsyntCttAt9999110295-10297
ORF1ab/nsp5A-B81S81delS3344deldelTCT---1919110295-10297
ORF1ab/nsp5A-B81S81PS3344PnonsynTctCct14130.92857110295-10297
ORF1ab/nsp5A-B81S81PS3344PnonsynTcTCcC1410.071428610295-10297
ORF1ab/nsp5A-B81S81CS3344CnonsyntCttGt1212110295-10297
ORF1ab/nsp5A-B81S81TS3344TnonsynTctAct66110295-10297
ORF1ab/nsp5A-B81S81LS3344LnonsynTCtCTt320.66666710295-10297
ORF1ab/nsp5A-B81S81del1S3344del1delTcT-cG320.66666710295-10297
ORF1ab/nsp5A-B81S81del1S3344del1deltcTtc-310.33333310295-10297
ORF1ab/nsp5A-B81S81LS3344LnonsynTCTCTC310.33333310295-10297
ORF1ab/nsp5A-B81S81HS3344HnonsynTCTCAC11110295-10297
ORF1ab/nsp5A-B81S81del2S3344del2deltCTt--11110295-10297

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B81S81FtCttTt11821183All0.000226
ORF1ab/nsp5A-B81S81FtCTtTC11183All0
ORF1ab/nsp5A-B81S81ATctGct466467All0.000089
ORF1ab/nsp5A-B81S81ATcTGcC1467All0
ORF1ab/nsp5A-B81S81ATctGct358358AY.99.20.032992
ORF1ab/nsp5A-B81S81FtCttTt261261B.1.1.70.000234
ORF1ab/nsp5A-B81S81StcTtcC128184All0.000024
ORF1ab/nsp5A-B81S81StcTtcA44184All0.000008
ORF1ab/nsp5A-B81S81StcTtcG12184All0.000002
ORF1ab/nsp5A-B81S81FtCttTt119119AY.40.000185
ORF1ab/nsp5A-B81S81FtCttTt102102B.1.2210.007245
ORF1ab/nsp5A-B81S81YtCttAt9999All0.000019
ORF1ab/nsp5A-B81S81FtCttTt6969B.1.1770.000909
ORF1ab/nsp5A-B81S81ATctGct5656B.1.1.70.00005
ORF1ab/nsp5A-B81S81YtCttAt3939AY.40.000061
ORF1ab/nsp5A-B81S81StcTtcA3939P.10.000614
ORF1ab/nsp5A-B81S81StcTtcC3636B.1.3510.00107
ORF1ab/nsp5A-B81S81FtCttTt3434B.1.1.4490.772727
ORF1ab/nsp5A-B81S81FtCttTt3232P.10.000504
ORF1ab/nsp5A-B81S81FtCttTt3131B.1.36.80.031
ORF1ab/nsp5A-B81S81FtCttTt3030B.1.617.20.000113
ORF1ab/nsp5A-B81S81FtCttTt2727AY.440.000164
ORF1ab/nsp5A-B81S81FtCttTt2424B.10.00022
ORF1ab/nsp5A-B81S81YtCttAt2323AY.4.50.002472
ORF1ab/nsp5A-B81S81FtCttTt2222AY.430.000097
ORF1ab/nsp5A-B81S81FtCttTt2121A.2.50.010479
ORF1ab/nsp5A-B81S81FtCttTt2121B.1.1.2140.001165
ORF1ab/nsp5A-B81S81FtCttTt2121P.1.120.010165
ORF1ab/nsp5A-B81S81StcTtcC1920B.1.1.70.000017
ORF1ab/nsp5A-B81S81StcTtcG120B.1.1.70.000001
ORF1ab/nsp5A-B81S81delTCT---1919All0.000004
ORF1ab/nsp5A-B81S81FtCttTt1919AY.1030.000118
ORF1ab/nsp5A-B81S81FtCttTt1919AY.4.50.002042
ORF1ab/nsp5A-B81S81FtCttTt1818AY.140.001584
ORF1ab/nsp5A-B81S81FtCttTt1818B.1.10.000327
ORF1ab/nsp5A-B81S81StcTtcC1717AY.590.009004
ORF1ab/nsp5A-B81S81FtCttTt1616AY.1180.001002
ORF1ab/nsp5A-B81S81StcTtcC1616B.1.1600.000499
ORF1ab/nsp5A-B81S81StcTtcC1616B.1.617.20.00006
ORF1ab/nsp5A-B81S81FtCttTt1515B.1.1280.00953
ORF1ab/nsp5A-B81S81PTctCct1314All0.000002
ORF1ab/nsp5A-B81S81PTcTCcC114All0
ORF1ab/nsp5A-B81S81FtCttTt1414AY.390.000346
ORF1ab/nsp5A-B81S81FtCttTt1414B.1.2370.069652
ORF1ab/nsp5A-B81S81FtCttTt1313AY.60.000535
ORF1ab/nsp5A-B81S81CtCttGt1212All0.000002
ORF1ab/nsp5A-B81S81ATctGct1212B.1.1770.000158
ORF1ab/nsp5A-B81S81FtCttTt99AY.1020.000239
ORF1ab/nsp5A-B81S81CtCttGt99AY.50.000186
ORF1ab/nsp5A-B81S81StcTtcG77B.1.10.000127
ORF1ab/nsp5A-B81S81FtCttTt77B.1.3510.000208
ORF1ab/nsp5A-B81S81FtCttTt77B.1.360.001021
ORF1ab/nsp5A-B81S81FtCttTt77B.1.6370.000512
ORF1ab/nsp5A-B81S81TTctAct66All0.000001
ORF1ab/nsp5A-B81S81FtCttTt66AY.1190.000212
ORF1ab/nsp5A-B81S81ATctGct66AY.1200.000223
ORF1ab/nsp5A-B81S81FtCttTt66AY.250.000036
ORF1ab/nsp5A-B81S81FtCttTt66AY.30.00006
ORF1ab/nsp5A-B81S81FtCttTt66AY.340.000582
ORF1ab/nsp5A-B81S81delTCT---66B.1.1.70.000005
ORF1ab/nsp5A-B81S81YtCttAt66B.1.1.70.000005
ORF1ab/nsp5A-B81S81FtCttTt66B.1.1570.01791
ORF1ab/nsp5A-B81S81FtCttTt66B.1.5260.000141
ORF1ab/nsp5A-B81S81FtCttTt66B.1.621.10.003035
ORF1ab/nsp5A-B81S81StcTtcG250.111111
ORF1ab/nsp5A-B81S81StcTtcA250.111111
ORF1ab/nsp5A-B81S81StcTtcC150.055556
ORF1ab/nsp5A-B81S81FtCttTt55AY.1000.00023
ORF1ab/nsp5A-B81S81FtCttTt55AY.200.000194
ORF1ab/nsp5A-B81S81FtCttTt55AY.470.000156
ORF1ab/nsp5A-B81S81YtCttAt55AY.90.000338
ORF1ab/nsp5A-B81S81FtCttTt55B.1.1.5190.000199
ORF1ab/nsp5A-B81S81FtCttTt55B.1.177.810.000947
ORF1ab/nsp5A-B81S81FtCttTt55B.1.20.000044
ORF1ab/nsp5A-B81S81FtCttTt55B.1.258.170.00052
ORF1ab/nsp5A-B81S81FtCttTt340.166667
ORF1ab/nsp5A-B81S81FtCTtTC140.055556
ORF1ab/nsp5A-B81S81ATctGct44AY.390.000099
ORF1ab/nsp5A-B81S81TTctAct44AY.40.000006
ORF1ab/nsp5A-B81S81StcTtcC44AY.40.000006
ORF1ab/nsp5A-B81S81ATctGct44AY.440.000024
ORF1ab/nsp5A-B81S81FtCttTt44AY.750.000224
ORF1ab/nsp5A-B81S81YtCttAt44AY.80.002424
ORF1ab/nsp5A-B81S81ATctGct44B.1.177.620.004768
ORF1ab/nsp5A-B81S81ATctGct44B.1.617.20.000015
ORF1ab/nsp5A-B81S81FtCttTt44B.1.6210.000354
ORF1ab/nsp5A-B81S81LTCtCTt23All0
ORF1ab/nsp5A-B81S81del1TcT-cG23All0
ORF1ab/nsp5A-B81S81LTCTCTC13All0
ORF1ab/nsp5A-B81S81del1tcTtc-13All0
ORF1ab/nsp5A-B81S81delTCT---33AY.40.000005
ORF1ab/nsp5A-B81S81StcTtcC23AY.750.000112
ORF1ab/nsp5A-B81S81StcTtcG13AY.750.000056
ORF1ab/nsp5A-B81S81FtCttTt33B.1.1.330.001263
ORF1ab/nsp5A-B81S81FtCttTt33B.1.177.860.00055
ORF1ab/nsp5A-B81S81YtCttAt33B.1.20.000026
ORF1ab/nsp5A-B81S81FtCttTt33B.1.2060.002447
ORF1ab/nsp5A-B81S81FtCttTt33B.1.2580.0002
ORF1ab/nsp5A-B81S81FtCttTt33B.1.4290.000071
ORF1ab/nsp5A-B81S81FtCttTt33P.1.150.000697
ORF1ab/nsp5A-B81S81FtCttTt33P.1.170.000485
ORF1ab/nsp5A-B81S81del1TcT-cG220.111111
ORF1ab/nsp5A-B81S81PTcTCcC120.055556
ORF1ab/nsp5A-B81S81LTCTCTC120.055556
ORF1ab/nsp5A-B81S81LTCtCTt120.055556
ORF1ab/nsp5A-B81S81PTctCct120.055556
ORF1ab/nsp5A-B81S81ATctGct22AY.1000.000092
ORF1ab/nsp5A-B81S81YtCttAt22AY.1200.000074
ORF1ab/nsp5A-B81S81PTctCct22AY.150.004444
ORF1ab/nsp5A-B81S81ATctGct22AY.260.000057
ORF1ab/nsp5A-B81S81FtCttTt22AY.330.000134
ORF1ab/nsp5A-B81S81FtCttTt22AY.360.000296
ORF1ab/nsp5A-B81S81FtCttTt22AY.4.20.000043
ORF1ab/nsp5A-B81S81StcTtcC22AY.430.000009
ORF1ab/nsp5A-B81S81YtCttAt22AY.430.000009
ORF1ab/nsp5A-B81S81ATctGct22AY.540.000191
ORF1ab/nsp5A-B81S81YtCttAt22AY.580.001815
ORF1ab/nsp5A-B81S81FtCttTt22AZ.20.001642
ORF1ab/nsp5A-B81S81StcTtcC12B.10.000009
ORF1ab/nsp5A-B81S81StcTtcG12B.10.000009
ORF1ab/nsp5A-B81S81FtCttTt22B.1.1.2310.006192
ORF1ab/nsp5A-B81S81FtCttTt22B.1.1.250.001137
ORF1ab/nsp5A-B81S81PTctCct22B.1.1.70.000002
ORF1ab/nsp5A-B81S81FtCttTt22B.1.177.210.000153
ORF1ab/nsp5A-B81S81StcTtcC12B.1.20.000009
ORF1ab/nsp5A-B81S81StcTtcA12B.1.20.000009
ORF1ab/nsp5A-B81S81FtCttTt22B.1.2230.005556
ORF1ab/nsp5A-B81S81FtCttTt22B.1.36.290.001035
ORF1ab/nsp5A-B81S81FtCttTt22B.1.3670.001585
ORF1ab/nsp5A-B81S81StcTtcC22B.1.4290.000047
ORF1ab/nsp5A-B81S81FtCttTt22B.1.4620.014493
ORF1ab/nsp5A-B81S81FtCttTt22B.1.5960.000174
ORF1ab/nsp5A-B81S81FtCttTt22C.370.000232
ORF1ab/nsp5A-B81S81ATctGct22C.370.000232
ORF1ab/nsp5A-B81S81FtCttTt22Q.10.000253
ORF1ab/nsp5A-B81S81FtCttTt22Q.80.00033
ORF1ab/nsp5A-B81S81del2tCTt--11All0
ORF1ab/nsp5A-B81S81HTCTCAC11All0
ORF1ab/nsp5A-B81S81FtCttTt11AY.100.00053
ORF1ab/nsp5A-B81S81LTCtCTt11AY.1030.000006
ORF1ab/nsp5A-B81S81FtCttTt11AY.1060.000335
ORF1ab/nsp5A-B81S81FtCttTt11AY.1140.000231
ORF1ab/nsp5A-B81S81FtCttTt11AY.1170.000085
ORF1ab/nsp5A-B81S81StcTtcC11AY.1190.000035
ORF1ab/nsp5A-B81S81ATctGct11AY.120.20.001285
ORF1ab/nsp5A-B81S81FtCttTt11AY.1210.000135
ORF1ab/nsp5A-B81S81FtCttTt11AY.130.000161
ORF1ab/nsp5A-B81S81YtCttAt11AY.170.008197
ORF1ab/nsp5A-B81S81FtCttTt11AY.190.00114
ORF1ab/nsp5A-B81S81YtCttAt11AY.250.000006
ORF1ab/nsp5A-B81S81ATctGct11AY.250.000006
ORF1ab/nsp5A-B81S81FtCttTt11AY.260.000028
ORF1ab/nsp5A-B81S81YtCttAt11AY.30.00001
ORF1ab/nsp5A-B81S81StcTtcC11AY.30.00001
ORF1ab/nsp5A-B81S81FtCttTt11AY.300.000396
ORF1ab/nsp5A-B81S81ATctGct11AY.340.000097
ORF1ab/nsp5A-B81S81FtCttTt11AY.39.10.00004
ORF1ab/nsp5A-B81S81FtCttTt11AY.4.2.10.000149
ORF1ab/nsp5A-B81S81delTCT---11AY.4.50.000107
ORF1ab/nsp5A-B81S81FtCttTt11AY.410.000294
ORF1ab/nsp5A-B81S81FtCttTt11AY.420.00004
ORF1ab/nsp5A-B81S81ATctGct11AY.430.000004
ORF1ab/nsp5A-B81S81StcTtcC11AY.460.000104
ORF1ab/nsp5A-B81S81FtCttTt11AY.46.50.000198
ORF1ab/nsp5A-B81S81FtCttTt11AY.50.000021
ORF1ab/nsp5A-B81S81StcTtcC11AY.5.30.000337
ORF1ab/nsp5A-B81S81FtCttTt11AY.670.000464
ORF1ab/nsp5A-B81S81FtCttTt11AY.710.000475
ORF1ab/nsp5A-B81S81FtCttTt11AY.740.000116
ORF1ab/nsp5A-B81S81StcTtcC11AY.840.000437
ORF1ab/nsp5A-B81S81YtCttAt11AY.870.000833
ORF1ab/nsp5A-B81S81StcTtcC11AY.930.000273
ORF1ab/nsp5A-B81S81FtCttTt11AY.98.10.000048
ORF1ab/nsp5A-B81S81ATctGct11AY.990.001049
ORF1ab/nsp5A-B81S81delTCT---11AY.99.10.001553
ORF1ab/nsp5A-B81S81StcTtcC11AY.99.20.000092
ORF1ab/nsp5A-B81S81FtCttTt11B0.000128
ORF1ab/nsp5A-B81S81delTCT---11B0.000128
ORF1ab/nsp5A-B81S81YtCttAt11B.1.10.000018
ORF1ab/nsp5A-B81S81ATcTGcC11B.1.10.000018
ORF1ab/nsp5A-B81S81ATctGct11B.1.1.1280.007092
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.1890.001513
ORF1ab/nsp5A-B81S81ATctGct11B.1.1.2140.000055
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.2160.00089
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.2200.001859
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.2220.000204
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.2650.003155
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.2910.000742
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.3010.001179
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.3060.000438
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.3110.000358
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.3180.000302
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.3480.000796
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.4110.014706
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1.4480.002033
ORF1ab/nsp5A-B81S81PTctCct11B.1.1.5140.038462
ORF1ab/nsp5A-B81S81TTctAct11B.1.1.70.000001
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1470.000756
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1600.000031
ORF1ab/nsp5A-B81S81FtCttTt11B.1.160.90.007194
ORF1ab/nsp5A-B81S81CtCttGt11B.1.1770.000013
ORF1ab/nsp5A-B81S81delTCT---11B.1.1770.000013
ORF1ab/nsp5A-B81S81YtCttAt11B.1.1770.000013
ORF1ab/nsp5A-B81S81ATctGct11B.1.177.210.000076
ORF1ab/nsp5A-B81S81delTCT---11B.1.177.40.000211
ORF1ab/nsp5A-B81S81YtCttAt11B.1.177.440.000519
ORF1ab/nsp5A-B81S81FtCttTt11B.1.177.440.000519
ORF1ab/nsp5A-B81S81delTCT---11B.1.177.570.000281
ORF1ab/nsp5A-B81S81FtCttTt11B.1.177.600.000218
ORF1ab/nsp5A-B81S81CtCttGt11B.1.177.600.000218
ORF1ab/nsp5A-B81S81FtCttTt11B.1.177.630.002703
ORF1ab/nsp5A-B81S81FtCttTt11B.1.177.750.001041
ORF1ab/nsp5A-B81S81FtCttTt11B.1.177.770.000726
ORF1ab/nsp5A-B81S81YtCttAt11B.1.1820.007246
ORF1ab/nsp5A-B81S81FtCttTt11B.1.1990.004132
ORF1ab/nsp5A-B81S81del1tcTtc-11B.1.20.000009
ORF1ab/nsp5A-B81S81PTctCct11B.1.221.10.002907
ORF1ab/nsp5A-B81S81YtCttAt11B.1.2340.000132
ORF1ab/nsp5A-B81S81ATctGct11B.1.2340.000132
ORF1ab/nsp5A-B81S81PTctCct11B.1.2360.002053
ORF1ab/nsp5A-B81S81StcTtcC11B.1.2580.000067
ORF1ab/nsp5A-B81S81StcTtcC11B.1.2600.003344
ORF1ab/nsp5A-B81S81PTctCct11B.1.3490.000715
ORF1ab/nsp5A-B81S81PTctCct11B.1.3510.00003
ORF1ab/nsp5A-B81S81delTCT---11B.1.36.180.00042
ORF1ab/nsp5A-B81S81FtCttTt11B.1.36.360.000602
ORF1ab/nsp5A-B81S81FtCttTt11B.1.36.90.003215
ORF1ab/nsp5A-B81S81FtCttTt11B.1.3660.004878
ORF1ab/nsp5A-B81S81FtCttTt11B.1.3690.000285
ORF1ab/nsp5A-B81S81FtCttTt11B.1.4270.00005
ORF1ab/nsp5A-B81S81StcTtcC11B.1.438.10.000107
ORF1ab/nsp5A-B81S81FtCttTt11B.1.5250.000113
ORF1ab/nsp5A-B81S81FtCttTt11B.1.5600.00463
ORF1ab/nsp5A-B81S81FtCttTt11B.1.5610.000397
ORF1ab/nsp5A-B81S81YtCttAt11B.1.5990.00365
ORF1ab/nsp5A-B81S81FtCttTt11B.1.6090.000479
ORF1ab/nsp5A-B81S81PTctCct11B.1.617.10.000129
ORF1ab/nsp5A-B81S81TTctAct11B.1.617.20.000004
ORF1ab/nsp5A-B81S81PTctCct11B.1.617.20.000004
ORF1ab/nsp5A-B81S81YtCttAt11B.1.617.20.000004
ORF1ab/nsp5A-B81S81delTCT---11B.1.6210.000089
ORF1ab/nsp5A-B81S81StcTtcC11B.1.6370.000073
ORF1ab/nsp5A-B81S81YtCttAt11B.1.6370.000073
ORF1ab/nsp5A-B81S81FtCttTt11B.1.930.000934
ORF1ab/nsp5A-B81S81del2tCTt--11C.350.000774
ORF1ab/nsp5A-B81S81HTCTCAC11C.350.000774
ORF1ab/nsp5A-B81S81delTCT---11C.370.000116
ORF1ab/nsp5A-B81S81delTCT---11N.40.004255
ORF1ab/nsp5A-B81S81YtCttAt11P.10.000016
ORF1ab/nsp5A-B81S81CtCttGt11P.10.000016
ORF1ab/nsp5A-B81S81StcTtcA11P.1.10.10.00813
ORF1ab/nsp5A-B81S81ATctGct11P.1.110.010204
ORF1ab/nsp5A-B81S81StcTtcA11P.1.120.000484
ORF1ab/nsp5A-B81S81FtCttTt11P.70.004367
ORF1ab/nsp5A-B81S81PTctCct11S.10.00495