CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 8

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B8F8FF3271FsynttCttT98219821110076-10078
ORF1ab/nsp5A-B8F8LF3271LnonsynTtcCtc7535680.75431610076-10078
ORF1ab/nsp5A-B8F8LF3271LnonsynttCttA7531820.241710076-10078
ORF1ab/nsp5A-B8F8LF3271LnonsynttCttG75330.0039840610076-10078
ORF1ab/nsp5A-B8F8delF3271deldelTTC---6060110076-10078
ORF1ab/nsp5A-B8F8IF3271InonsynTtcAtc55540.98181810076-10078
ORF1ab/nsp5A-B8F8IF3271InonsynTtCAtT5510.018181810076-10078
ORF1ab/nsp5A-B8F8YF3271YnonsyntTctAc3535110076-10078
ORF1ab/nsp5A-B8F8VF3271VnonsynTtcGtc1515110076-10078
ORF1ab/nsp5A-B8F8SF3271SnonsyntTctCc12100.83333310076-10078
ORF1ab/nsp5A-B8F8SF3271SnonsyntTCtCA1210.083333310076-10078
ORF1ab/nsp5A-B8F8SF3271SnonsyntTCtCT1210.083333310076-10078
ORF1ab/nsp5A-B8F8CF3271CnonsyntTctGc1010110076-10078
ORF1ab/nsp5A-B8F8del1F3271del1delttCtt-940.44444410076-10078
ORF1ab/nsp5A-B8F8del1F3271del1delTtc-tc930.33333310076-10078
ORF1ab/nsp5A-B8F8del1F3271del1delTTc-Cc920.22222210076-10078
ORF1ab/nsp5A-B8F8del2F3271del2deltTCt--320.66666710076-10078
ORF1ab/nsp5A-B8F8del2F3271del2delTTc--c310.33333310076-10078
ORF1ab/nsp5A-B8F8XF3271XnonsyntTCtAG11110076-10078

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B8F8FttCttT98219821All0.001878
ORF1ab/nsp5A-B8F8FttCttT16421642B.1.1.70.00147
ORF1ab/nsp5A-B8F8FttCttT15251525B.1.177.150.962145
ORF1ab/nsp5A-B8F8LTtcCtc568753All0.000109
ORF1ab/nsp5A-B8F8LttCttA182753All0.000035
ORF1ab/nsp5A-B8F8LttCttG3753All0.000001
ORF1ab/nsp5A-B8F8FttCttT729729B.1.1770.009599
ORF1ab/nsp5A-B8F8FttCttT545545P.10.008586
ORF1ab/nsp5A-B8F8FttCttT426426AY.4.20.009239
ORF1ab/nsp5A-B8F8FttCttT404404B.1.438.10.043334
ORF1ab/nsp5A-B8F8FttCttT350350B.1.4290.008235
ORF1ab/nsp5A-B8F8FttCttT285285B.1.360.041582
ORF1ab/nsp5A-B8F8FttCttT258258AY.40.000402
ORF1ab/nsp5A-B8F8FttCttT200200AY.440.001217
ORF1ab/nsp5A-B8F8FttCttT186186B.1.258.170.019339
ORF1ab/nsp5A-B8F8FttCttT177177B.1.1600.00552
ORF1ab/nsp5A-B8F8FttCttT172172B.1.617.20.000648
ORF1ab/nsp5A-B8F8FttCttT168168B.1.10.003048
ORF1ab/nsp5A-B8F8LTtcCtc137137B.1.1770.001804
ORF1ab/nsp5A-B8F8FttCttT132132AY.1060.044206
ORF1ab/nsp5A-B8F8FttCttT130130AA.21
ORF1ab/nsp5A-B8F8FttCttT126126AA.10.913043
ORF1ab/nsp5A-B8F8FttCttT115115B.1.4270.005807
ORF1ab/nsp5A-B8F8FttCttT110110AA.41
ORF1ab/nsp5A-B8F8FttCttT109109AA.71
ORF1ab/nsp5A-B8F8FttCttT9797AY.430.00043
ORF1ab/nsp5A-B8F8FttCttT8989AY.1030.000553
ORF1ab/nsp5A-B8F8FttCttT8989B.1.20.000784
ORF1ab/nsp5A-B8F8FttCttT8888AY.30.000875
ORF1ab/nsp5A-B8F8FttCttT7676B.10.000696
ORF1ab/nsp5A-B8F8LTtcCtc7075AY.40.000109
ORF1ab/nsp5A-B8F8LttCttA575AY.40.000008
ORF1ab/nsp5A-B8F8FttCttT6666AY.200.002565
ORF1ab/nsp5A-B8F8FttCttT6262AA.51
ORF1ab/nsp5A-B8F8FttCttT6262AA.61
ORF1ab/nsp5A-B8F8FttCttT6262AY.250.000373
ORF1ab/nsp5A-B8F8FttCttT6262B.1.1.4311
ORF1ab/nsp5A-B8F8LTtcCtc3561AY.440.000213
ORF1ab/nsp5A-B8F8LttCttA2661AY.440.000158
ORF1ab/nsp5A-B8F8delTTC---6060All0.000011
ORF1ab/nsp5A-B8F8ITtcAtc5455All0.00001
ORF1ab/nsp5A-B8F8ITtCAtT155All0
ORF1ab/nsp5A-B8F8LTtcCtc4955AY.1030.000304
ORF1ab/nsp5A-B8F8LttCttA655AY.1030.000037
ORF1ab/nsp5A-B8F8FttCttT5353B.1.5260.001246
ORF1ab/nsp5A-B8F8LTtcCtc4750AY.230.003278
ORF1ab/nsp5A-B8F8LttCttA350AY.230.000209
ORF1ab/nsp5A-B8F8FttCttT4545AA.81
ORF1ab/nsp5A-B8F8LTtcCtc3344B.1.20.000291
ORF1ab/nsp5A-B8F8LttCttA1144B.1.20.000097
ORF1ab/nsp5A-B8F8FttCttT4141AY.390.001013
ORF1ab/nsp5A-B8F8FttCttT3939B.1.1.5190.001549
ORF1ab/nsp5A-B8F8FttCttT3737AA.31
ORF1ab/nsp5A-B8F8FttCttT3737AY.1080.040794
ORF1ab/nsp5A-B8F8YtTctAc3535All0.000007
ORF1ab/nsp5A-B8F8FttCttT3434B.1.1.2840.003652
ORF1ab/nsp5A-B8F8FttCttT3434B.1.36.270.025954
ORF1ab/nsp5A-B8F8LTtcCtc2533AY.250.00015
ORF1ab/nsp5A-B8F8LttCttA833AY.250.000048
ORF1ab/nsp5A-B8F8FttCttT3232AY.1000.001472
ORF1ab/nsp5A-B8F8FttCttT3232AY.50.000661
ORF1ab/nsp5A-B8F8FttCttT3131AY.1020.000822
ORF1ab/nsp5A-B8F8LttCttA1931B.1.1.70.000017
ORF1ab/nsp5A-B8F8LTtcCtc1231B.1.1.70.000011
ORF1ab/nsp5A-B8F8delTTC---2626B.1.1.70.000023
ORF1ab/nsp5A-B8F8FttCttT2626B.1.3510.000773
ORF1ab/nsp5A-B8F8YtTctAc2525B.1.6111
ORF1ab/nsp5A-B8F8FttCttT2424B.1.2580.001597
ORF1ab/nsp5A-B8F8LTtcCtc2023B.1.617.20.000075
ORF1ab/nsp5A-B8F8LttCttA323B.1.617.20.000011
ORF1ab/nsp5A-B8F8FttCttT2121AY.1190.000741
ORF1ab/nsp5A-B8F8LttCttA1721B.1.10.000308
ORF1ab/nsp5A-B8F8LTtcCtc421B.1.10.000073
ORF1ab/nsp5A-B8F8FttCttT2121B.1.1.4640.030928
ORF1ab/nsp5A-B8F8FttCttT2020B.1.4560.065359
ORF1ab/nsp5A-B8F8FttCttT1919AY.3.10.00162
ORF1ab/nsp5A-B8F8FttCttT1919B.1.36.180.007983
ORF1ab/nsp5A-B8F8LttCttA1118B.10.000101
ORF1ab/nsp5A-B8F8LTtcCtc618B.10.000055
ORF1ab/nsp5A-B8F8LttCttG118B.10.000009
ORF1ab/nsp5A-B8F8LTtcCtc1818B.1.1.1720.327273
ORF1ab/nsp5A-B8F8FttCttT1818B.1.6210.001593
ORF1ab/nsp5A-B8F8FttCttT1717AY.370.005373
ORF1ab/nsp5A-B8F8FttCttT1717AY.560.027287
ORF1ab/nsp5A-B8F8VTtcGtc1515All0.000003
ORF1ab/nsp5A-B8F8FttCttT1515B.1.1.1530.016429
ORF1ab/nsp5A-B8F8FttCttT1414B.1.177.810.002651
ORF1ab/nsp5A-B8F8FttCttT1414B.1.2400.003018
ORF1ab/nsp5A-B8F8FttCttT1313AY.420.000523
ORF1ab/nsp5A-B8F8FttCttT1313AY.600.012195
ORF1ab/nsp5A-B8F8FttCttT1313B.1.2210.000923
ORF1ab/nsp5A-B8F8FttCttT1313C.370.001509
ORF1ab/nsp5A-B8F8StTctCc1012All0.000002
ORF1ab/nsp5A-B8F8StTCtCA112All0
ORF1ab/nsp5A-B8F8StTCtCT112All0
ORF1ab/nsp5A-B8F8LTtcCtc912AY.430.00004
ORF1ab/nsp5A-B8F8LttCttA312AY.430.000013
ORF1ab/nsp5A-B8F8FttCttT1212B.1.1.1710.044118
ORF1ab/nsp5A-B8F8FttCttT1212B.1.1.2220.002448
ORF1ab/nsp5A-B8F8FttCttT1212P.20.00224
ORF1ab/nsp5A-B8F8FttCttT1111B.1.177.600.002403
ORF1ab/nsp5A-B8F8CtTctGc1010All0.000002
ORF1ab/nsp5A-B8F8FttCttT1010AY.39.20.015408
ORF1ab/nsp5A-B8F8FttCttT1010AY.4.50.001075
ORF1ab/nsp5A-B8F8FttCttT1010B.1.1.2650.031546
ORF1ab/nsp5A-B8F8FttCttT1010B.1.2340.001319
ORF1ab/nsp5A-B8F8FttCttT1010B.1.5250.001132
ORF1ab/nsp5A-B8F8FttCttT1010B.1.6370.000731
ORF1ab/nsp5A-B8F8FttCttT1010P.1.120.00484
ORF1ab/nsp5A-B8F8FttCttT1010Q.80.001649
ORF1ab/nsp5A-B8F8del1ttCtt-49All0.000001
ORF1ab/nsp5A-B8F8del1Ttc-tc39All0.000001
ORF1ab/nsp5A-B8F8del1TTc-Cc29All0
ORF1ab/nsp5A-B8F8FttCttT99AY.290.000142
ORF1ab/nsp5A-B8F8LTtcCtc79AY.30.00007
ORF1ab/nsp5A-B8F8LttCttA29AY.30.00002
ORF1ab/nsp5A-B8F8ITtcAtc99B.10.000082
ORF1ab/nsp5A-B8F8CtTctGc99B.1.1600.000281
ORF1ab/nsp5A-B8F8FttCttT77AY.98.10.000339
ORF1ab/nsp5A-B8F8LTtcCtc47B.1.1.5190.000159
ORF1ab/nsp5A-B8F8LttCttA37B.1.1.5190.000119
ORF1ab/nsp5A-B8F8LTtcCtc77B.1.177.860.001284
ORF1ab/nsp5A-B8F8LttCttA67B.1.4290.000141
ORF1ab/nsp5A-B8F8LTtcCtc17B.1.4290.000024
ORF1ab/nsp5A-B8F8FttCttT77B.1.5870.013283
ORF1ab/nsp5A-B8F8FttCttT77B.1.5960.00061
ORF1ab/nsp5A-B8F8FttCttT77D.20.000525
ORF1ab/nsp5A-B8F8FttCttT77Q.30.001015
ORF1ab/nsp5A-B8F8FttCttT66AY.1170.000507
ORF1ab/nsp5A-B8F8LTtcCtc56AY.200.000194
ORF1ab/nsp5A-B8F8LttCttA16AY.200.000039
ORF1ab/nsp5A-B8F8FttCttT66AY.230.000418
ORF1ab/nsp5A-B8F8FttCttT66AY.330.000401
ORF1ab/nsp5A-B8F8FttCttT66AY.470.000187
ORF1ab/nsp5A-B8F8ITtcAtc66B.1.10.000109
ORF1ab/nsp5A-B8F8FttCttT66B.1.1.10.00196
ORF1ab/nsp5A-B8F8FttCttT66B.1.1.1760.002636
ORF1ab/nsp5A-B8F8ITtcAtc66B.1.1.390.003058
ORF1ab/nsp5A-B8F8FttCttT66B.1.5610.002382
ORF1ab/nsp5A-B8F8LTtcCtc56B.1.5750.001517
ORF1ab/nsp5A-B8F8LttCttA16B.1.5750.000303
ORF1ab/nsp5A-B8F8FttCttT66P.1.150.001394
ORF1ab/nsp5A-B8F8FttCttT55AE.80.002445
ORF1ab/nsp5A-B8F8LttCttA45AY.1000.000184
ORF1ab/nsp5A-B8F8LTtcCtc15AY.1000.000046
ORF1ab/nsp5A-B8F8FttCttT55AY.1130.000712
ORF1ab/nsp5A-B8F8FttCttT55AY.1180.000313
ORF1ab/nsp5A-B8F8delTTC---55AY.4.50.000537
ORF1ab/nsp5A-B8F8FttCttT55AY.520.004072
ORF1ab/nsp5A-B8F8FttCttT55B.1.1.100.005574
ORF1ab/nsp5A-B8F8LTtcCtc55B.1.1.2580.016287
ORF1ab/nsp5A-B8F8FttCttT55B.1.1.630.001929
ORF1ab/nsp5A-B8F8ITtcAtc55B.1.1.700.001705
ORF1ab/nsp5A-B8F8FttCttT55B.1.2430.000348
ORF1ab/nsp5A-B8F8LTtcCtc44AY.1190.000141
ORF1ab/nsp5A-B8F8FttCttT44AY.1200.000149
ORF1ab/nsp5A-B8F8LTtcCtc44AY.240.001724
ORF1ab/nsp5A-B8F8FttCttT44AY.300.001583
ORF1ab/nsp5A-B8F8LTtcCtc44AY.580.00363
ORF1ab/nsp5A-B8F8FttCttT44AY.60.000165
ORF1ab/nsp5A-B8F8FttCttT44AY.610.000419
ORF1ab/nsp5A-B8F8FttCttT44AY.750.000224
ORF1ab/nsp5A-B8F8FttCttT44AY.850.001709
ORF1ab/nsp5A-B8F8YtTctAc44B.10.000037
ORF1ab/nsp5A-B8F8FttCttT44B.1.1.3010.004717
ORF1ab/nsp5A-B8F8FttCttT44B.1.1.3060.001754
ORF1ab/nsp5A-B8F8FttCttT44B.1.177.230.012945
ORF1ab/nsp5A-B8F8FttCttT44B.1.2060.003263
ORF1ab/nsp5A-B8F8FttCttT44B.1.5490.028777
ORF1ab/nsp5A-B8F8FttCttT44B.1.5890.030303
ORF1ab/nsp5A-B8F8LTtcCtc44C.160.004242
ORF1ab/nsp5A-B8F8FttCttT44P.1.140.000191
ORF1ab/nsp5A-B8F8del2tTCt--23All0
ORF1ab/nsp5A-B8F8del2TTc--c13All0
ORF1ab/nsp5A-B8F8FttCttT33AY.1010.001471
ORF1ab/nsp5A-B8F8LTtcCtc33AY.1100.000338
ORF1ab/nsp5A-B8F8FttCttT33AY.1110.000549
ORF1ab/nsp5A-B8F8FttCttT33AY.1160.00086
ORF1ab/nsp5A-B8F8VTtcGtc33AY.140.000264
ORF1ab/nsp5A-B8F8FttCttT33AY.260.000085
ORF1ab/nsp5A-B8F8FttCttT33AY.270.000194
ORF1ab/nsp5A-B8F8FttCttT33AY.320.001597
ORF1ab/nsp5A-B8F8FttCttT33AY.360.000445
ORF1ab/nsp5A-B8F8LTtcCtc23AY.39.10.000079
ORF1ab/nsp5A-B8F8LttCttA13AY.39.10.00004
ORF1ab/nsp5A-B8F8delTTC---33AY.430.000013
ORF1ab/nsp5A-B8F8FttCttT33AY.540.000286
ORF1ab/nsp5A-B8F8FttCttT33AY.550.002752
ORF1ab/nsp5A-B8F8FttCttT33AY.590.001589
ORF1ab/nsp5A-B8F8FttCttT33AY.640.001786
ORF1ab/nsp5A-B8F8FttCttT33AY.9.10.000251
ORF1ab/nsp5A-B8F8LTtcCtc33AY.980.000237
ORF1ab/nsp5A-B8F8LTtcCtc33AY.98.10.000145
ORF1ab/nsp5A-B8F8del1ttCtt-23B.10.000018
ORF1ab/nsp5A-B8F8del1TTc-Cc13B.10.000009
ORF1ab/nsp5A-B8F8FttCttT33B.1.1.3170.001235
ORF1ab/nsp5A-B8F8FttCttT33B.1.1.3260.005282
ORF1ab/nsp5A-B8F8FttCttT33B.1.1.3760.017857
ORF1ab/nsp5A-B8F8FttCttT33B.1.160.80.003866
ORF1ab/nsp5A-B8F8FttCttT33B.1.177.210.000229
ORF1ab/nsp5A-B8F8FttCttT33B.1.177.70.000495
ORF1ab/nsp5A-B8F8FttCttT33B.1.2100.006397
ORF1ab/nsp5A-B8F8FttCttT33B.1.258.140.002941
ORF1ab/nsp5A-B8F8ITtcAtc33B.1.3670.002377
ORF1ab/nsp5A-B8F8LttCttA33B.1.5760.00272
ORF1ab/nsp5A-B8F8FttCttT33B.1.595.10.017544
ORF1ab/nsp5A-B8F8LttCttA23B.1.5960.000174
ORF1ab/nsp5A-B8F8LTtcCtc13B.1.5960.000087
ORF1ab/nsp5A-B8F8FttCttT33P.1.70.000958
ORF1ab/nsp5A-B8F8ITtcAtc120.055556
ORF1ab/nsp5A-B8F8ITtCAtT120.055556
ORF1ab/nsp5A-B8F8FttCttT22A.20.001324
ORF1ab/nsp5A-B8F8FttCttT22A.210.00554
ORF1ab/nsp5A-B8F8FttCttT22A.23.10.001408
ORF1ab/nsp5A-B8F8FttCttT22AY.10.000791
ORF1ab/nsp5A-B8F8LTtcCtc12AY.1020.000027
ORF1ab/nsp5A-B8F8LttCttA12AY.1020.000027
ORF1ab/nsp5A-B8F8FttCttT22AY.1140.000462
ORF1ab/nsp5A-B8F8LttCttA22AY.1170.000169
ORF1ab/nsp5A-B8F8FttCttT22AY.120.000632
ORF1ab/nsp5A-B8F8LTtcCtc12AY.1200.000037
ORF1ab/nsp5A-B8F8LttCttA12AY.1200.000037
ORF1ab/nsp5A-B8F8FttCttT22AY.120.10.000642
ORF1ab/nsp5A-B8F8LTtcCtc22AY.1210.000271
ORF1ab/nsp5A-B8F8FttCttT22AY.130.000322
ORF1ab/nsp5A-B8F8FttCttT22AY.160.000759
ORF1ab/nsp5A-B8F8VTtcGtc22AY.250.000012
ORF1ab/nsp5A-B8F8StTctCc22AY.250.000012
ORF1ab/nsp5A-B8F8LttCttA22AY.340.000194
ORF1ab/nsp5A-B8F8VTtcGtc22AY.390.000049
ORF1ab/nsp5A-B8F8LTtcCtc12AY.390.000025
ORF1ab/nsp5A-B8F8LttCttA12AY.390.000025
ORF1ab/nsp5A-B8F8FttCttT22AY.39.10.000079
ORF1ab/nsp5A-B8F8delTTC---22AY.40.000003
ORF1ab/nsp5A-B8F8FttCttT22AY.450.000243
ORF1ab/nsp5A-B8F8FttCttT22AY.460.000208
ORF1ab/nsp5A-B8F8FttCttT22AY.46.10.002053
ORF1ab/nsp5A-B8F8FttCttT22AY.680.000547
ORF1ab/nsp5A-B8F8LttCttA12AY.840.000437
ORF1ab/nsp5A-B8F8LTtcCtc12AY.840.000437
ORF1ab/nsp5A-B8F8FttCttT22AY.90.000135
ORF1ab/nsp5A-B8F8FttCttT22AY.99.20.000184
ORF1ab/nsp5A-B8F8FttCttT22B0.000256
ORF1ab/nsp5A-B8F8ITtcAtc22B0.000256
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.1170.019417
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.1610.007067
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.2140.000111
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.2200.003717
ORF1ab/nsp5A-B8F8ITtcAtc22B.1.1.2690.002706
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.2770.001517
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.280.000622
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.3480.001592
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.3620.011236
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.3680.006173
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.370.000386
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.3720.001377
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.4090.005666
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.4320.002532
ORF1ab/nsp5A-B8F8LttCttG22B.1.1.4340.000697
ORF1ab/nsp5A-B8F8FttCttT22B.1.1.540.006042
ORF1ab/nsp5A-B8F8ITtcAtc22B.1.1600.000062
ORF1ab/nsp5A-B8F8LTtcCtc22B.1.1600.000062
ORF1ab/nsp5A-B8F8VTtcGtc22B.1.1770.000026
ORF1ab/nsp5A-B8F8ITtcAtc22B.1.1770.000026
ORF1ab/nsp5A-B8F8del1Ttc-tc12B.1.1770.000013
ORF1ab/nsp5A-B8F8del1ttCtt-12B.1.1770.000013
ORF1ab/nsp5A-B8F8LTtcCtc22B.1.177.120.000303
ORF1ab/nsp5A-B8F8ITtcAtc22B.1.177.230.006472
ORF1ab/nsp5A-B8F8delTTC---22B.1.177.40.000422
ORF1ab/nsp5A-B8F8FttCttT22B.1.177.650.001331
ORF1ab/nsp5A-B8F8LttCttA22B.1.177.730.001133
ORF1ab/nsp5A-B8F8LTtcCtc22B.1.177.820.000955
ORF1ab/nsp5A-B8F8YtTctAc22B.1.20.000018
ORF1ab/nsp5A-B8F8StTctCc22B.1.20.000018
ORF1ab/nsp5A-B8F8FttCttT22B.1.214.20.001199
ORF1ab/nsp5A-B8F8FttCttT22B.1.214.40.018182
ORF1ab/nsp5A-B8F8FttCttT22B.1.2980.004228
ORF1ab/nsp5A-B8F8LTtcCtc12B.1.3110.000275
ORF1ab/nsp5A-B8F8LttCttA12B.1.3110.000275
ORF1ab/nsp5A-B8F8FttCttT22B.1.3350.020619
ORF1ab/nsp5A-B8F8FttCttT22B.1.36.290.001035
ORF1ab/nsp5A-B8F8FttCttT22B.1.3960.001411
ORF1ab/nsp5A-B8F8FttCttT22B.1.466.20.000782
ORF1ab/nsp5A-B8F8FttCttT22B.1.5500.027397
ORF1ab/nsp5A-B8F8FttCttT22B.1.617.10.000258
ORF1ab/nsp5A-B8F8FttCttT22B.1.6180.008065
ORF1ab/nsp5A-B8F8LttCttA22B.1.621.10.001012
ORF1ab/nsp5A-B8F8FttCttT22B.1.6380.105263
ORF1ab/nsp5A-B8F8ITtcAtc22B.1.9.40.01227
ORF1ab/nsp5A-B8F8FttCttT22B.520.020202
ORF1ab/nsp5A-B8F8FttCttT22C.360.001821
ORF1ab/nsp5A-B8F8LttCttA22P.10.000032
ORF1ab/nsp5A-B8F8LttCttA22P.1.150.000465
ORF1ab/nsp5A-B8F8FttCttT22P.1.160.000748
ORF1ab/nsp5A-B8F8FttCttT22P.1.170.000324
ORF1ab/nsp5A-B8F8LttCttA22Q.30.00029
ORF1ab/nsp5A-B8F8FttCttT110.055556
ORF1ab/nsp5A-B8F8XtTCtAG11All0
ORF1ab/nsp5A-B8F8VTtcGtc11AY.10.000396
ORF1ab/nsp5A-B8F8FttCttT11AY.1070.000466
ORF1ab/nsp5A-B8F8FttCttT11AY.1100.000113
ORF1ab/nsp5A-B8F8delTTC---11AY.1110.000183
ORF1ab/nsp5A-B8F8VTtcGtc11AY.1130.000142
ORF1ab/nsp5A-B8F8LTtcCtc11AY.1160.000287
ORF1ab/nsp5A-B8F8FttCttT11AY.116.10.000311
ORF1ab/nsp5A-B8F8LTtcCtc11AY.1180.000063
ORF1ab/nsp5A-B8F8delTTC---11AY.1200.000037
ORF1ab/nsp5A-B8F8LttCttA11AY.120.10.000321
ORF1ab/nsp5A-B8F8FttCttT11AY.1210.000135
ORF1ab/nsp5A-B8F8FttCttT11AY.140.000088
ORF1ab/nsp5A-B8F8LTtcCtc11AY.140.000088
ORF1ab/nsp5A-B8F8YtTctAc11AY.200.000039
ORF1ab/nsp5A-B8F8LttCttA11AY.23.10.000417
ORF1ab/nsp5A-B8F8FttCttT11AY.23.10.000417
ORF1ab/nsp5A-B8F8delTTC---11AY.250.000006
ORF1ab/nsp5A-B8F8del2tTCt--11AY.250.000006
ORF1ab/nsp5A-B8F8LttCttA11AY.260.000028
ORF1ab/nsp5A-B8F8LttCttA11AY.270.000065
ORF1ab/nsp5A-B8F8LTtcCtc11AY.290.000016
ORF1ab/nsp5A-B8F8FttCttT11AY.29.10.000221
ORF1ab/nsp5A-B8F8LttCttA11AY.3.10.000085
ORF1ab/nsp5A-B8F8FttCttT11AY.350.000233
ORF1ab/nsp5A-B8F8StTCtCA11AY.40.000002
ORF1ab/nsp5A-B8F8ITtcAtc11AY.40.000002
ORF1ab/nsp5A-B8F8VTtcGtc11AY.40.000002
ORF1ab/nsp5A-B8F8FttCttT11AY.4.30.000842
ORF1ab/nsp5A-B8F8LTtcCtc11AY.4.50.000107
ORF1ab/nsp5A-B8F8LTtcCtc11AY.420.00004
ORF1ab/nsp5A-B8F8del1Ttc-tc11AY.430.000004
ORF1ab/nsp5A-B8F8ITtcAtc11AY.430.000004
ORF1ab/nsp5A-B8F8YtTctAc11AY.430.000004
ORF1ab/nsp5A-B8F8LTtcCtc11AY.460.000104
ORF1ab/nsp5A-B8F8FttCttT11AY.46.20.000635
ORF1ab/nsp5A-B8F8delTTC---11AY.46.20.000635
ORF1ab/nsp5A-B8F8FttCttT11AY.46.40.000165
ORF1ab/nsp5A-B8F8FttCttT11AY.46.60.000072
ORF1ab/nsp5A-B8F8CtTctGc11AY.46.60.000072
ORF1ab/nsp5A-B8F8LttCttA11AY.470.000031
ORF1ab/nsp5A-B8F8FttCttT11AY.480.000465
ORF1ab/nsp5A-B8F8LTtcCtc11AY.50.000021
ORF1ab/nsp5A-B8F8FttCttT11AY.5.30.000337
ORF1ab/nsp5A-B8F8ITtcAtc11AY.5.40.000277
ORF1ab/nsp5A-B8F8FttCttT11AY.5.40.000277
ORF1ab/nsp5A-B8F8LttCttA11AY.5.40.000277
ORF1ab/nsp5A-B8F8FttCttT11AY.530.000288
ORF1ab/nsp5A-B8F8FttCttT11AY.620.000436
ORF1ab/nsp5A-B8F8FttCttT11AY.650.000533
ORF1ab/nsp5A-B8F8VTtcGtc11AY.670.000464
ORF1ab/nsp5A-B8F8LttCttA11AY.680.000274
ORF1ab/nsp5A-B8F8FttCttT11AY.690.000187
ORF1ab/nsp5A-B8F8FttCttT11AY.70.000196
ORF1ab/nsp5A-B8F8delTTC---11AY.70.000196
ORF1ab/nsp5A-B8F8FttCttT11AY.740.000116
ORF1ab/nsp5A-B8F8FttCttT11AY.75.10.00018
ORF1ab/nsp5A-B8F8LttCttA11AY.780.001541
ORF1ab/nsp5A-B8F8del1ttCtt-11AY.9.20.000037
ORF1ab/nsp5A-B8F8FttCttT11AY.9.20.000037
ORF1ab/nsp5A-B8F8FttCttT11AY.9.2.10.001976
ORF1ab/nsp5A-B8F8FttCttT11AY.930.000273
ORF1ab/nsp5A-B8F8FttCttT11AY.940.000443
ORF1ab/nsp5A-B8F8FttCttT11AY.990.001049
ORF1ab/nsp5A-B8F8LTtcCtc11AY.99.20.000092
ORF1ab/nsp5A-B8F8LttCttA11B0.000128
ORF1ab/nsp5A-B8F8delTTC---11B.10.000009
ORF1ab/nsp5A-B8F8XtTCtAG11B.1.10.000018
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.1.10.000327
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.1010.01
ORF1ab/nsp5A-B8F8delTTC---11B.1.1.1390.022727
ORF1ab/nsp5A-B8F8delTTC---11B.1.1.1590.004673
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.1890.001513
ORF1ab/nsp5A-B8F8ITtcAtc11B.1.1.1890.001513
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.1920.002309
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.1.1960.005714
ORF1ab/nsp5A-B8F8LttCttA11B.1.1.2200.001859
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.2280.003049
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.2370.005405
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.250.000569
ORF1ab/nsp5A-B8F8ITtcAtc11B.1.1.2660.012195
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.2690.001353
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.2910.000742
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.2980.000862
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.1.3040.002809
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.3080.011765
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.3110.000358
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.3160.000925
ORF1ab/nsp5A-B8F8StTctCc11B.1.1.3540.004386
ORF1ab/nsp5A-B8F8LttCttA11B.1.1.3720.000689
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.4040.015873
ORF1ab/nsp5A-B8F8delTTC---11B.1.1.4090.002833
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.4120.007634
ORF1ab/nsp5A-B8F8ITtcAtc11B.1.1.4330.001425
ORF1ab/nsp5A-B8F8VTtcGtc11B.1.1.4340.000349
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.4660.008696
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.4860.001577
ORF1ab/nsp5A-B8F8LttCttA11B.1.1.5070.008696
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.5150.02
ORF1ab/nsp5A-B8F8FttCttT11B.1.1.700.000341
ORF1ab/nsp5A-B8F8ITtcAtc11B.1.1040.00369
ORF1ab/nsp5A-B8F8LttCttA11B.1.110.30.000718
ORF1ab/nsp5A-B8F8FttCttT11B.1.110.30.000718
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.1110.001175
ORF1ab/nsp5A-B8F8FttCttT11B.1.1110.001175
ORF1ab/nsp5A-B8F8FttCttT11B.1.1280.000635
ORF1ab/nsp5A-B8F8FttCttT11B.1.1390.000733
ORF1ab/nsp5A-B8F8ITtcAtc11B.1.1460.004237
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.1470.000756
ORF1ab/nsp5A-B8F8delTTC---11B.1.1600.000031
ORF1ab/nsp5A-B8F8StTctCc11B.1.1600.000031
ORF1ab/nsp5A-B8F8delTTC---11B.1.1610.017241
ORF1ab/nsp5A-B8F8FttCttT11B.1.1660.008475
ORF1ab/nsp5A-B8F8FttCttT11B.1.1670.007812
ORF1ab/nsp5A-B8F8FttCttT11B.1.1690.014925
ORF1ab/nsp5A-B8F8delTTC---11B.1.1770.000013
ORF1ab/nsp5A-B8F8delTTC---11B.1.177.100.000878
ORF1ab/nsp5A-B8F8del2tTCt--11B.1.177.180.00116
ORF1ab/nsp5A-B8F8FttCttT11B.1.177.260.006993
ORF1ab/nsp5A-B8F8FttCttT11B.1.177.310.011494
ORF1ab/nsp5A-B8F8FttCttT11B.1.177.330.001645
ORF1ab/nsp5A-B8F8FttCttT11B.1.177.40.000211
ORF1ab/nsp5A-B8F8FttCttT11B.1.177.50.001242
ORF1ab/nsp5A-B8F8FttCttT11B.1.177.540.000606
ORF1ab/nsp5A-B8F8delTTC---11B.1.177.560.000668
ORF1ab/nsp5A-B8F8FttCttT11B.1.177.60.000977
ORF1ab/nsp5A-B8F8LttCttA11B.1.177.60.000977
ORF1ab/nsp5A-B8F8delTTC---11B.1.177.60.000977
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.177.650.000665
ORF1ab/nsp5A-B8F8delTTC---11B.1.177.690.001484
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.177.70.000165
ORF1ab/nsp5A-B8F8FttCttT11B.1.177.750.001041
ORF1ab/nsp5A-B8F8delTTC---11B.1.177.810.000189
ORF1ab/nsp5A-B8F8FttCttT11B.1.177.860.000183
ORF1ab/nsp5A-B8F8delTTC---11B.1.1790.003759
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.1890.004292
ORF1ab/nsp5A-B8F8del1TTc-Cc11B.1.20.000009
ORF1ab/nsp5A-B8F8FttCttT11B.1.2390.001221
ORF1ab/nsp5A-B8F8ITtcAtc11B.1.2580.000067
ORF1ab/nsp5A-B8F8FttCttT11B.1.3050.002151
ORF1ab/nsp5A-B8F8FttCttT11B.1.3110.000275
ORF1ab/nsp5A-B8F8FttCttT11B.1.3240.001605
ORF1ab/nsp5A-B8F8FttCttT11B.1.3250.006897
ORF1ab/nsp5A-B8F8FttCttT11B.1.3290.000608
ORF1ab/nsp5A-B8F8FttCttT11B.1.3340.018182
ORF1ab/nsp5A-B8F8LttCttA11B.1.3490.000715
ORF1ab/nsp5A-B8F8LttCttA11B.1.3510.00003
ORF1ab/nsp5A-B8F8FttCttT11B.1.351.20.000303
ORF1ab/nsp5A-B8F8FttCttT11B.1.351.50.0006
ORF1ab/nsp5A-B8F8LttCttA11B.1.36.100.004785
ORF1ab/nsp5A-B8F8FttCttT11B.1.36.170.000494
ORF1ab/nsp5A-B8F8delTTC---11B.1.36.180.00042
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.36.220.001208
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.36.290.000517
ORF1ab/nsp5A-B8F8FttCttT11B.1.36.310.001751
ORF1ab/nsp5A-B8F8FttCttT11B.1.36.80.001
ORF1ab/nsp5A-B8F8FttCttT11B.1.3670.000792
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.3720.010989
ORF1ab/nsp5A-B8F8FttCttT11B.1.3780.006849
ORF1ab/nsp5A-B8F8StTctCc11B.1.3960.000706
ORF1ab/nsp5A-B8F8FttCttT11B.1.3980.002976
ORF1ab/nsp5A-B8F8FttCttT11B.1.4030.003268
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.4220.000812
ORF1ab/nsp5A-B8F8StTctCc11B.1.4270.00005
ORF1ab/nsp5A-B8F8FttCttT11B.1.4480.002625
ORF1ab/nsp5A-B8F8FttCttT11B.1.4680.005714
ORF1ab/nsp5A-B8F8FttCttT11B.1.4970.000315
ORF1ab/nsp5A-B8F8StTCtCT11B.1.4970.000315
ORF1ab/nsp5A-B8F8FttCttT11B.1.4990.00105
ORF1ab/nsp5A-B8F8FttCttT11B.1.5090.000866
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.5090.000866
ORF1ab/nsp5A-B8F8FttCttT11B.1.5170.000427
ORF1ab/nsp5A-B8F8LttCttA11B.1.5240.001406
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.5250.000113
ORF1ab/nsp5A-B8F8LttCttA11B.1.5260.000024
ORF1ab/nsp5A-B8F8FttCttT11B.1.5510.00129
ORF1ab/nsp5A-B8F8FttCttT11B.1.5650.00081
ORF1ab/nsp5A-B8F8LttCttA11B.1.5680.001111
ORF1ab/nsp5A-B8F8FttCttT11B.1.575.10.002439
ORF1ab/nsp5A-B8F8StTctCc11B.1.5800.004065
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.5870.001898
ORF1ab/nsp5A-B8F8FttCttT11B.1.5950.000261
ORF1ab/nsp5A-B8F8VTtcGtc11B.1.5960.000087
ORF1ab/nsp5A-B8F8StTctCc11B.1.5960.000087
ORF1ab/nsp5A-B8F8YtTctAc11B.1.5960.000087
ORF1ab/nsp5A-B8F8LTtcCtc11B.1.6090.000479
ORF1ab/nsp5A-B8F8del1Ttc-tc11B.1.617.10.000129
ORF1ab/nsp5A-B8F8ITtcAtc11B.1.617.20.000004
ORF1ab/nsp5A-B8F8YtTctAc11B.1.617.20.000004
ORF1ab/nsp5A-B8F8delTTC---11B.1.617.20.000004
ORF1ab/nsp5A-B8F8FttCttT11B.1.6200.000946
ORF1ab/nsp5A-B8F8LttCttA11B.1.6230.000536
ORF1ab/nsp5A-B8F8LttCttA11B.1.6250.002353
ORF1ab/nsp5A-B8F8FttCttT11B.1.6270.00202
ORF1ab/nsp5A-B8F8FttCttT11B.1.6280.000352
ORF1ab/nsp5A-B8F8FttCttT11B.1.6340.003425
ORF1ab/nsp5A-B8F8ITtcAtc11B.1.80.001972
ORF1ab/nsp5A-B8F8LttCttA11B.30.000831
ORF1ab/nsp5A-B8F8LTtcCtc11B.4.50.011905
ORF1ab/nsp5A-B8F8LTtcCtc11C.140.004329
ORF1ab/nsp5A-B8F8FttCttT11C.160.00106
ORF1ab/nsp5A-B8F8FttCttT11C.20.016129
ORF1ab/nsp5A-B8F8FttCttT11C.350.000774
ORF1ab/nsp5A-B8F8del2TTc--c11C.350.000774
ORF1ab/nsp5A-B8F8ITtcAtc11K.10.02381
ORF1ab/nsp5A-B8F8FttCttT11N.100.029412
ORF1ab/nsp5A-B8F8delTTC---11N.40.004255
ORF1ab/nsp5A-B8F8FttCttT11P.1.10.000318
ORF1ab/nsp5A-B8F8FttCttT11P.1.10.10.00813
ORF1ab/nsp5A-B8F8LttCttA11P.1.160.000374
ORF1ab/nsp5A-B8F8LttCttA11P.1.170.000162
ORF1ab/nsp5A-B8F8FttCttT11P.1.20.001156
ORF1ab/nsp5A-B8F8LttCttA11Q.10.000126
ORF1ab/nsp5A-B8F8delTTC---11Q.20.000613
ORF1ab/nsp5A-B8F8LttCttA11Q.40.000455
ORF1ab/nsp5A-B8F8FttCttT11Q.40.000455
ORF1ab/nsp5A-B8F8FttCttT11W.10.008696