CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 8 | F8F | F3271F | syn | ttC | ttT | 9821 | 9821 | 1 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8L | F3271L | nonsyn | Ttc | Ctc | 753 | 568 | 0.754316 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8L | F3271L | nonsyn | ttC | ttA | 753 | 182 | 0.2417 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8L | F3271L | nonsyn | ttC | ttG | 753 | 3 | 0.00398406 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8del | F3271del | del | TTC | --- | 60 | 60 | 1 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8I | F3271I | nonsyn | Ttc | Atc | 55 | 54 | 0.981818 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8I | F3271I | nonsyn | TtC | AtT | 55 | 1 | 0.0181818 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8Y | F3271Y | nonsyn | tTc | tAc | 35 | 35 | 1 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8V | F3271V | nonsyn | Ttc | Gtc | 15 | 15 | 1 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8S | F3271S | nonsyn | tTc | tCc | 12 | 10 | 0.833333 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8S | F3271S | nonsyn | tTC | tCA | 12 | 1 | 0.0833333 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8S | F3271S | nonsyn | tTC | tCT | 12 | 1 | 0.0833333 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8C | F3271C | nonsyn | tTc | tGc | 10 | 10 | 1 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8del1 | F3271del1 | del | ttC | tt- | 9 | 4 | 0.444444 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8del1 | F3271del1 | del | Ttc | -tc | 9 | 3 | 0.333333 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8del1 | F3271del1 | del | TTc | -Cc | 9 | 2 | 0.222222 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8del2 | F3271del2 | del | tTC | t-- | 3 | 2 | 0.666667 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8del2 | F3271del2 | del | TTc | --c | 3 | 1 | 0.333333 | 10076-10078 |
ORF1ab/nsp5A-B | 8 | F8X | F3271X | nonsyn | tTC | tAG | 1 | 1 | 1 | 10076-10078 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 9821 | 9821 | All | 0.001878 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1642 | 1642 | B.1.1.7 | 0.00147 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1525 | 1525 | B.1.177.15 | 0.962145 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 568 | 753 | All | 0.000109 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 182 | 753 | All | 0.000035 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttG | 3 | 753 | All | 0.000001 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 729 | 729 | B.1.177 | 0.009599 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 545 | 545 | P.1 | 0.008586 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 426 | 426 | AY.4.2 | 0.009239 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 404 | 404 | B.1.438.1 | 0.043334 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 350 | 350 | B.1.429 | 0.008235 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 285 | 285 | B.1.36 | 0.041582 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 258 | 258 | AY.4 | 0.000402 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 200 | 200 | AY.44 | 0.001217 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 186 | 186 | B.1.258.17 | 0.019339 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 177 | 177 | B.1.160 | 0.00552 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 172 | 172 | B.1.617.2 | 0.000648 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 168 | 168 | B.1.1 | 0.003048 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 137 | 137 | B.1.177 | 0.001804 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 132 | 132 | AY.106 | 0.044206 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 130 | 130 | AA.2 | 1 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 126 | 126 | AA.1 | 0.913043 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 115 | 115 | B.1.427 | 0.005807 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 110 | 110 | AA.4 | 1 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 109 | 109 | AA.7 | 1 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 97 | 97 | AY.43 | 0.00043 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 89 | 89 | AY.103 | 0.000553 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 89 | 89 | B.1.2 | 0.000784 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 88 | 88 | AY.3 | 0.000875 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 76 | 76 | B.1 | 0.000696 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 70 | 75 | AY.4 | 0.000109 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 5 | 75 | AY.4 | 0.000008 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 66 | 66 | AY.20 | 0.002565 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 62 | 62 | AA.5 | 1 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 62 | 62 | AA.6 | 1 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 62 | 62 | AY.25 | 0.000373 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 62 | 62 | B.1.1.431 | 1 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 35 | 61 | AY.44 | 0.000213 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 26 | 61 | AY.44 | 0.000158 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 60 | 60 | All | 0.000011 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 54 | 55 | All | 0.00001 |
ORF1ab/nsp5A-B | 8 | F8I | TtC | AtT | 1 | 55 | All | 0 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 49 | 55 | AY.103 | 0.000304 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 6 | 55 | AY.103 | 0.000037 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 53 | 53 | B.1.526 | 0.001246 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 47 | 50 | AY.23 | 0.003278 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 3 | 50 | AY.23 | 0.000209 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 45 | 45 | AA.8 | 1 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 33 | 44 | B.1.2 | 0.000291 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 11 | 44 | B.1.2 | 0.000097 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 41 | 41 | AY.39 | 0.001013 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 39 | 39 | B.1.1.519 | 0.001549 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 37 | 37 | AA.3 | 1 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 37 | 37 | AY.108 | 0.040794 |
ORF1ab/nsp5A-B | 8 | F8Y | tTc | tAc | 35 | 35 | All | 0.000007 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 34 | 34 | B.1.1.284 | 0.003652 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 34 | 34 | B.1.36.27 | 0.025954 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 25 | 33 | AY.25 | 0.00015 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 8 | 33 | AY.25 | 0.000048 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 32 | 32 | AY.100 | 0.001472 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 32 | 32 | AY.5 | 0.000661 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 31 | 31 | AY.102 | 0.000822 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 19 | 31 | B.1.1.7 | 0.000017 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 12 | 31 | B.1.1.7 | 0.000011 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 26 | 26 | B.1.351 | 0.000773 |
ORF1ab/nsp5A-B | 8 | F8Y | tTc | tAc | 25 | 25 | B.1.611 | 1 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 24 | 24 | B.1.258 | 0.001597 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 20 | 23 | B.1.617.2 | 0.000075 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 3 | 23 | B.1.617.2 | 0.000011 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 21 | 21 | AY.119 | 0.000741 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 17 | 21 | B.1.1 | 0.000308 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 4 | 21 | B.1.1 | 0.000073 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 21 | 21 | B.1.1.464 | 0.030928 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 20 | 20 | B.1.456 | 0.065359 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 19 | 19 | AY.3.1 | 0.00162 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 19 | 19 | B.1.36.18 | 0.007983 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 11 | 18 | B.1 | 0.000101 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 6 | 18 | B.1 | 0.000055 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttG | 1 | 18 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 18 | 18 | B.1.1.172 | 0.327273 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 18 | 18 | B.1.621 | 0.001593 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 17 | 17 | AY.37 | 0.005373 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 17 | 17 | AY.56 | 0.027287 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 15 | 15 | All | 0.000003 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 15 | 15 | B.1.1.153 | 0.016429 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 14 | 14 | B.1.177.81 | 0.002651 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 14 | 14 | B.1.240 | 0.003018 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 13 | 13 | AY.42 | 0.000523 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 13 | 13 | AY.60 | 0.012195 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 13 | 13 | B.1.221 | 0.000923 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 13 | 13 | C.37 | 0.001509 |
ORF1ab/nsp5A-B | 8 | F8S | tTc | tCc | 10 | 12 | All | 0.000002 |
ORF1ab/nsp5A-B | 8 | F8S | tTC | tCA | 1 | 12 | All | 0 |
ORF1ab/nsp5A-B | 8 | F8S | tTC | tCT | 1 | 12 | All | 0 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 9 | 12 | AY.43 | 0.00004 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 3 | 12 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 12 | 12 | B.1.1.171 | 0.044118 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 12 | 12 | B.1.1.222 | 0.002448 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 12 | 12 | P.2 | 0.00224 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp5A-B | 8 | F8C | tTc | tGc | 10 | 10 | All | 0.000002 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 10 | 10 | AY.39.2 | 0.015408 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 10 | 10 | AY.4.5 | 0.001075 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 10 | 10 | B.1.1.265 | 0.031546 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 10 | 10 | B.1.525 | 0.001132 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 10 | 10 | Q.8 | 0.001649 |
ORF1ab/nsp5A-B | 8 | F8del1 | ttC | tt- | 4 | 9 | All | 0.000001 |
ORF1ab/nsp5A-B | 8 | F8del1 | Ttc | -tc | 3 | 9 | All | 0.000001 |
ORF1ab/nsp5A-B | 8 | F8del1 | TTc | -Cc | 2 | 9 | All | 0 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 7 | 9 | AY.3 | 0.00007 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 2 | 9 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp5A-B | 8 | F8C | tTc | tGc | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 4 | 7 | B.1.1.519 | 0.000159 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 3 | 7 | B.1.1.519 | 0.000119 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 6 | 7 | B.1.429 | 0.000141 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 7 | B.1.429 | 0.000024 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 7 | 7 | B.1.587 | 0.013283 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 5 | 6 | AY.20 | 0.000194 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 6 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 6 | 6 | B.1.1.176 | 0.002636 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 6 | 6 | B.1.1.39 | 0.003058 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 5 | 6 | B.1.575 | 0.001517 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 6 | B.1.575 | 0.000303 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 5 | 5 | AE.8 | 0.002445 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 4 | 5 | AY.100 | 0.000184 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 5 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 5 | 5 | AY.52 | 0.004072 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 5 | 5 | B.1.1.10 | 0.005574 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 5 | 5 | B.1.1.258 | 0.016287 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 4 | 4 | AY.24 | 0.001724 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 4 | 4 | AY.58 | 0.00363 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp5A-B | 8 | F8Y | tTc | tAc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | B.1.1.301 | 0.004717 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | B.1.177.23 | 0.012945 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | B.1.206 | 0.003263 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | B.1.549 | 0.028777 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | B.1.589 | 0.030303 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 4 | 4 | C.16 | 0.004242 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp5A-B | 8 | F8del2 | tTC | t-- | 2 | 3 | All | 0 |
ORF1ab/nsp5A-B | 8 | F8del2 | TTc | --c | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 2 | 3 | AY.39.1 | 0.000079 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 3 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp5A-B | 8 | F8del1 | ttC | tt- | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 8 | F8del1 | TTc | -Cc | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | B.1.1.376 | 0.017857 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | B.1.160.8 | 0.003866 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | B.1.210 | 0.006397 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | B.1.258.14 | 0.002941 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | B.1.595.1 | 0.017544 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 2 | 3 | B.1.596 | 0.000174 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 3 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 8 | F8I | TtC | AtT | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 8 | F8S | tTc | tCc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 2 | 2 | B | 0.000256 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttG | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 8 | F8del1 | Ttc | -tc | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 8 | F8del1 | ttC | tt- | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 2 | 2 | B.1.177.23 | 0.006472 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp5A-B | 8 | F8Y | tTc | tAc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 8 | F8S | tTc | tCc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.214.4 | 0.018182 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.298 | 0.004228 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 2 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 2 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.335 | 0.020619 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.550 | 0.027397 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.1.638 | 0.105263 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 2 | 2 | B.1.9.4 | 0.01227 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | B.52 | 0.020202 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 8 | F8X | tTC | tAG | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 8 | F8Y | tTc | tAc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 8 | F8del2 | tTC | t-- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp5A-B | 8 | F8S | tTC | tCA | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 8 | F8del1 | Ttc | -tc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 8 | F8Y | tTc | tAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp5A-B | 8 | F8C | tTc | tGc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp5A-B | 8 | F8del1 | ttC | tt- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 8 | F8X | tTC | tAG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.308 | 0.011765 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp5A-B | 8 | F8S | tTc | tCc | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 8 | F8S | tTc | tCc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.166 | 0.008475 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.167 | 0.007812 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 8 | F8del2 | tTC | t-- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.177.26 | 0.006993 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp5A-B | 8 | F8del1 | TTc | -Cc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.334 | 0.018182 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.372 | 0.010989 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp5A-B | 8 | F8S | tTc | tCc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp5A-B | 8 | F8S | tTc | tCc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp5A-B | 8 | F8S | tTC | tCT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp5A-B | 8 | F8S | tTc | tCc | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 8 | F8V | Ttc | Gtc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 8 | F8S | tTc | tCc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 8 | F8Y | tTc | tAc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 8 | F8del1 | Ttc | -tc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 8 | F8Y | tTc | tAc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp5A-B | 8 | F8L | Ttc | Ctc | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 8 | F8del2 | TTc | --c | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 8 | F8I | Ttc | Atc | 1 | 1 | K.1 | 0.02381 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | N.10 | 0.029412 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp5A-B | 8 | F8del | TTC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp5A-B | 8 | F8L | ttC | ttA | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp5A-B | 8 | F8F | ttC | ttT | 1 | 1 | W.1 | 0.008696 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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