CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 75 | L75L | L3338L | syn | ctC | ctT | 17723 | 17675 | 0.997292 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75L | L3338L | syn | ctC | ctA | 17723 | 43 | 0.00242623 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75L | L3338L | syn | ctC | ctG | 17723 | 5 | 0.000282119 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75F | L3338F | nonsyn | Ctc | Ttc | 6751 | 6737 | 0.997926 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75F | L3338F | nonsyn | CtC | TtT | 6751 | 14 | 0.00207377 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75I | L3338I | nonsyn | Ctc | Atc | 1068 | 1066 | 0.998127 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75I | L3338I | nonsyn | CtC | AtT | 1068 | 2 | 0.00187266 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75R | L3338R | nonsyn | cTc | cGc | 28 | 28 | 1 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75del | L3338del | del | CTC | --- | 27 | 27 | 1 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75V | L3338V | nonsyn | Ctc | Gtc | 24 | 24 | 1 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75P | L3338P | nonsyn | cTc | cCc | 17 | 15 | 0.882353 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75P | L3338P | nonsyn | cTC | cCT | 17 | 2 | 0.117647 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75H | L3338H | nonsyn | cTc | cAc | 7 | 7 | 1 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75del1 | L3338del1 | del | cTC | cD- | 5 | 2 | 0.4 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75del1 | L3338del1 | del | Ctc | -tc | 5 | 1 | 0.2 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75del1 | L3338del1 | del | cTC | cC- | 5 | 1 | 0.2 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75del1 | L3338del1 | del | ctC | ct- | 5 | 1 | 0.2 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75T | L3338T | nonsyn | CTC | ACT | 3 | 2 | 0.666667 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75S | L3338S | nonsyn | CTC | TCT | 3 | 1 | 0.333333 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75S | L3338S | nonsyn | CTc | TCc | 3 | 1 | 0.333333 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75T | L3338T | nonsyn | CTc | ACc | 3 | 1 | 0.333333 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75S | L3338S | nonsyn | CTC | TCA | 3 | 1 | 0.333333 | 10277-10279 |
ORF1ab/nsp5A-B | 75 | L75Y | L3338Y | nonsyn | CTc | TAc | 2 | 2 | 1 | 10277-10279 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 17675 | 17723 | All | 0.003381 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 43 | 17723 | All | 0.000008 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctG | 5 | 17723 | All | 0.000001 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 6737 | 6751 | All | 0.001289 |
ORF1ab/nsp5A-B | 75 | L75F | CtC | TtT | 14 | 6751 | All | 0.000003 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6463 | 6483 | B.1.1.7 | 0.005786 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 19 | 6483 | B.1.1.7 | 0.000017 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctG | 1 | 6483 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2875 | 2878 | AY.4 | 0.004475 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 3 | 2878 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2800 | 2809 | B.1.1.7 | 0.002507 |
ORF1ab/nsp5A-B | 75 | L75F | CtC | TtT | 9 | 2809 | B.1.1.7 | 0.000008 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1129 | 1129 | B.1.367 | 0.894612 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1066 | 1068 | All | 0.000204 |
ORF1ab/nsp5A-B | 75 | L75I | CtC | AtT | 2 | 1068 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 798 | 798 | AY.4.2 | 0.017308 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 748 | 749 | AY.4 | 0.001164 |
ORF1ab/nsp5A-B | 75 | L75I | CtC | AtT | 1 | 749 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 504 | 504 | B.1.526 | 0.011846 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 460 | 460 | AY.3 | 0.004575 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 369 | 369 | B.1.617.2 | 0.001389 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 344 | 344 | AY.75.1 | 0.062027 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 334 | 334 | AY.44 | 0.002033 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 317 | 317 | AY.82 | 0.430122 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 305 | 305 | AY.3 | 0.003034 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 258 | 258 | AY.47 | 0.008025 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 250 | 250 | AY.4 | 0.000389 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 238 | 242 | B.1 | 0.00218 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 3 | 242 | B.1 | 0.000027 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctG | 1 | 242 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 206 | 206 | AY.103 | 0.001279 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 204 | 205 | P.1 | 0.003214 |
ORF1ab/nsp5A-B | 75 | L75F | CtC | TtT | 1 | 205 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 200 | 200 | P.2 | 0.037327 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 191 | 191 | B.1.429 | 0.004494 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 191 | 191 | B.1.617.2 | 0.000719 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 185 | 185 | AY.43 | 0.00082 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 184 | 185 | B.1.177 | 0.002423 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 185 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 175 | 175 | B.1.427 | 0.008837 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 173 | 173 | B.1.2 | 0.001523 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 172 | 172 | B.1.1.7 | 0.000154 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 159 | 159 | B.1.637 | 0.011619 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 145 | 145 | AY.13 | 0.023342 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 144 | 145 | B.1 | 0.001319 |
ORF1ab/nsp5A-B | 75 | L75F | CtC | TtT | 1 | 145 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 137 | 137 | AY.25 | 0.000824 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 128 | 128 | AY.6 | 0.005264 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 127 | 127 | B.1.221 | 0.009021 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 113 | 114 | B.1.1 | 0.00205 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 114 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 113 | 113 | B.1.1 | 0.00205 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 111 | 111 | B.1.243 | 0.007724 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 89 | 89 | P.1 | 0.001402 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 82 | 82 | B.1.429 | 0.001929 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 80 | 80 | B.1.177.35 | 0.055287 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 77 | 78 | Q.8 | 0.012698 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 78 | Q.8 | 0.000165 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 74 | 74 | AY.25 | 0.000445 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 66 | 66 | B.1.445 | 0.776471 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 65 | 65 | AY.119 | 0.002295 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 63 | 63 | AY.102 | 0.00167 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 62 | 62 | B.1.351 | 0.001843 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 61 | 61 | AY.44 | 0.000371 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 60 | 60 | AY.103 | 0.000373 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 51 | 51 | B.1.526 | 0.001199 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 49 | 49 | AY.118 | 0.00307 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 48 | 48 | C.37 | 0.005571 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 47 | 47 | R.1 | 0.00423 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 46 | 46 | B.1.177.81 | 0.008709 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 45 | 45 | B.1.2 | 0.000396 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 45 | 45 | B.1.351 | 0.001338 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 44 | 44 | B.1.1.214 | 0.00244 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 44 | 44 | B.1.177 | 0.000579 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 42 | 42 | AY.54 | 0.004005 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 42 | 42 | AY.98.1 | 0.002034 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 41 | 41 | AY.23 | 0.00286 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 41 | 41 | AY.75 | 0.002297 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 40 | 40 | B.1.177.12 | 0.006068 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 39 | 39 | AY.29 | 0.000615 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 38 | 38 | B.1.621 | 0.003364 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 36 | 36 | B.1.160 | 0.001123 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 36 | 36 | B.1.36 | 0.005252 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 35 | 35 | B.1.1.519 | 0.00139 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 34 | 34 | AY.20 | 0.001321 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 34 | 34 | B.1.1.519 | 0.00135 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 32 | 32 | AY.39 | 0.000791 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 32 | 32 | AY.43 | 0.000142 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 32 | 32 | AY.99.2 | 0.002949 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 31 | 31 | AY.26 | 0.000878 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 31 | 31 | AY.4.2 | 0.000672 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 31 | 31 | AY.9 | 0.002095 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 30 | 30 | AY.100 | 0.00138 |
ORF1ab/nsp5A-B | 75 | L75R | cTc | cGc | 28 | 28 | All | 0.000005 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 28 | 28 | B.1.408 | 0.103321 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 27 | 27 | All | 0.000005 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 27 | 27 | AY.36 | 0.004002 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 27 | 27 | B.1.258.17 | 0.002807 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 27 | 27 | B.19 | 1 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 27 | 27 | Q.1 | 0.003411 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 26 | 26 | AY.34 | 0.002521 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 25 | 25 | AY.9.2 | 0.000918 |
ORF1ab/nsp5A-B | 75 | L75V | Ctc | Gtc | 24 | 24 | All | 0.000005 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 23 | 24 | AY.120 | 0.000855 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 24 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 24 | 24 | B.1.258 | 0.001597 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 24 | 24 | B.1.36.18 | 0.010084 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 23 | 23 | AY.3.1 | 0.001961 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 23 | 23 | B.1.1.297 | 0.051454 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 23 | 23 | B.1.1.70 | 0.007844 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 23 | 23 | B.1.596 | 0.002004 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 22 | 22 | AY.5 | 0.000454 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 20 | 20 | AY.46.6 | 0.001444 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 19 | 20 | B.1.177.81 | 0.003597 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 20 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 20 | 20 | B.1.243 | 0.001392 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 20 | 20 | B.1.637 | 0.001461 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 19 | 19 | AY.100 | 0.000874 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 19 | 19 | AY.45 | 0.002312 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 19 | 19 | B.1.561 | 0.007543 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 18 | 18 | AY.117 | 0.001521 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 18 | 18 | AY.42 | 0.000724 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 17 | 18 | B.1.160 | 0.00053 |
ORF1ab/nsp5A-B | 75 | L75F | CtC | TtT | 1 | 18 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 18 | 18 | B.1.232 | 0.009672 |
ORF1ab/nsp5A-B | 75 | L75R | cTc | cGc | 18 | 18 | B.1.427 | 0.000909 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 18 | 18 | P.1.17 | 0.002912 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 15 | 17 | All | 0.000003 |
ORF1ab/nsp5A-B | 75 | L75P | cTC | cCT | 2 | 17 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 17 | 17 | B.1.177.54 | 0.010309 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 16 | 16 | AY.61 | 0.001676 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 16 | 16 | B.1.1.284 | 0.001718 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 16 | 16 | B.1.177.42 | 0.014311 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 16 | 16 | B.1.177.87 | 0.011645 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 16 | 16 | B.1.409 | 0.0125 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 15 | 15 | AY.84 | 0.006562 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 15 | 15 | B.1.1.374 | 0.035629 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 15 | 15 | B.1.221.4 | 0.0625 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 13 | 14 | AY.33 | 0.000868 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 14 | AY.33 | 0.000067 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 14 | 14 | B.1.221 | 0.000994 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 14 | 14 | B.1.474 | 0.026616 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 13 | 13 | AY.9.2 | 0.000477 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 13 | 13 | B.1.214.4 | 0.118182 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 13 | 13 | B.1.577 | 0.008935 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 13 | 13 | P.1.14 | 0.000621 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 12 | 12 | A.2.5 | 0.005988 |
ORF1ab/nsp5A-B | 75 | L75V | Ctc | Gtc | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 12 | 12 | AY.111 | 0.002198 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 12 | 12 | B.1.177.29 | 0.8 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 12 | 12 | B.1.351.5 | 0.007194 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 12 | 12 | B.39 | 0.027972 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 12 | 12 | Q.8 | 0.001979 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 11 | 11 | A.23.1 | 0.007746 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 11 | 11 | B.1.1.263 | 0.017134 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 11 | 11 | B.1.620 | 0.010407 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | AY.14 | 0.00088 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | AY.46.4 | 0.001645 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 10 | AY.47 | 0.00028 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 10 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 10 | 10 | AY.99.2 | 0.000922 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | B | 0.001278 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 10 | 10 | B.1.1.396 | 0.454545 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | B.1.1.63 | 0.003858 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 9 | 9 | B.1.177.60 | 0.001966 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 9 | B.1.177.82 | 0.004296 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 9 | B.1.369 | 0.002567 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 9 | 9 | B.1.427 | 0.000454 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 8 | 8 | AY.121 | 0.001083 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 8 | 8 | B.1.1.284 | 0.000859 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 8 | 8 | B.1.214.2 | 0.004796 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp5A-B | 75 | L75H | cTc | cAc | 7 | 7 | All | 0.000001 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 7 | 7 | AY.114 | 0.001618 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 7 | 7 | AY.7 | 0.001372 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 7 | 7 | B.1.1.294 | 0.008861 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 7 | 7 | B.1.311 | 0.001922 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 7 | 7 | B.1.397 | 0.033981 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 7 | 7 | B.1.470 | 0.009831 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 7 | 7 | P.1.12 | 0.003388 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 6 | 6 | A.2 | 0.003971 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | AY.105 | 0.003859 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | B.1.139 | 0.004399 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 6 | 6 | B.1.177.52 | 0.010545 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 5 | 6 | B.1.258.17 | 0.00052 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 6 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 6 | 6 | B.1.597 | 0.027778 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 6 | B.1.628 | 0.001057 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 3 | 6 | B.1.628 | 0.001057 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 6 | 6 | C.31 | 0.107143 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | A.2.5.1 | 0.024038 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 5 | 5 | A.23.1 | 0.003521 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | AE.8 | 0.002445 |
ORF1ab/nsp5A-B | 75 | L75del1 | cTC | cD- | 2 | 5 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75del1 | ctC | ct- | 1 | 5 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75del1 | Ctc | -tc | 1 | 5 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75del1 | cTC | cC- | 1 | 5 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | AY.46.2 | 0.003177 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.1.343 | 0.104167 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.160.16 | 0.004647 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.177.18 | 0.0058 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.177.32 | 0.006748 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | B.1.177.62 | 0.005959 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp5A-B | 75 | L75V | Ctc | Gtc | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.258.14 | 0.004902 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 5 | 5 | B.1.509 | 0.004329 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | B.1.619.1 | 0.003207 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 5 | D.2 | 0.0003 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctG | 1 | 5 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 5 | 5 | P.1.2 | 0.00578 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 4 | 0.166667 | |
ORF1ab/nsp5A-B | 75 | L75F | CtC | TtT | 1 | 4 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 4 | 4 | A | 0.001548 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | AY.104 | 0.007937 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 4 | 4 | AY.109 | 0.002959 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | AY.86 | 0.00332 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.241 | 0.008282 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.312 | 0.007648 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 4 | B.1.1.33 | 0.001263 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 4 | B.1.1.33 | 0.000421 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 4 | 4 | B.1.1.409 | 0.011331 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.433 | 0.005698 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.507 | 0.034783 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.1.525 | 0.021858 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.177.15 | 0.002524 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.177.83 | 0.005926 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 4 | 4 | B.1.189 | 0.017167 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.221.3 | 0.003333 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 4 | 4 | B.1.293 | 0.05 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.3 | 0.010471 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | B.1.476 | 0.4 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | N.5 | 0.007067 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctG | 2 | 3 | 0.111111 | |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 3 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | A.27 | 0.004967 |
ORF1ab/nsp5A-B | 75 | L75T | CTC | ACT | 2 | 3 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75T | CTc | ACc | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75S | CTC | TCA | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75S | CTc | TCc | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75S | CTC | TCT | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.66 | 0.003209 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.1.265 | 0.009464 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.1.44 | 0.007229 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.1.46 | 0.0131 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.1.506 | 0.111111 |
ORF1ab/nsp5A-B | 75 | L75H | cTc | cAc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.177.11 | 0.005093 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.177.63 | 0.008108 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.258.11 | 0.001189 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.405 | 0.037037 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | B.1.523 | 0.007353 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | B.1.631 | 0.010101 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 3 | C.35 | 0.001548 |
ORF1ab/nsp5A-B | 75 | L75F | CtC | TtT | 1 | 3 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | N.4 | 0.012766 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 3 | 3 | W.3 | 0.015789 |
ORF1ab/nsp5A-B | 75 | L75Y | CTc | TAc | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 75 | L75H | cTc | cAc | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 75 | L75del1 | cTC | cD- | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75S | CTc | TCc | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75P | cTC | cCT | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75T | CTc | ACc | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75I | CtC | AtT | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75T | CTC | ACT | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75S | CTC | TCT | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp5A-B | 75 | L75Y | CTc | TAc | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AT.1 | 0.010256 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp5A-B | 75 | L75V | Ctc | Gtc | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp5A-B | 75 | L75V | Ctc | Gtc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 75 | L75R | cTc | cGc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.123 | 0.035714 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.417 | 0.005405 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp5A-B | 75 | L75R | cTc | cGc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.131 | 0.017544 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 2 | B.1.177.86 | 0.000183 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 2 | B.1.177.86 | 0.000183 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.36.24 | 0.012346 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.403 | 0.006536 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.453 | 0.006472 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp5A-B | 75 | L75R | cTc | cGc | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | B.45 | 0.007663 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | D.3 | 0.011834 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 75 | L75V | Ctc | Gtc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 75 | L75V | Ctc | Gtc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 75 | L75H | cTc | cAc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 75 | L75del1 | Ctc | -tc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 75 | L75del1 | cTC | cC- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 75 | L75P | cTC | cCT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctA | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 75 | L75S | CTC | TCA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 75 | L75V | Ctc | Gtc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.209 | 0.008929 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.272 | 0.005208 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.299 | 0.012195 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp5A-B | 75 | L75R | cTc | cGc | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.480 | 0.025 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp5A-B | 75 | L75del1 | ctC | ct- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 75 | L75R | cTc | cGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.39 | 0.015385 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.208 | 0.04 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.224 | 0.025 |
ORF1ab/nsp5A-B | 75 | L75H | cTc | cAc | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp5A-B | 75 | L75R | cTc | cGc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 75 | L75R | cTc | cGc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.372 | 0.010989 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp5A-B | 75 | L75P | cTc | cCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp5A-B | 75 | L75T | CTC | ACT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 75 | L75del | CTC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 75 | L75I | Ctc | Atc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp5A-B | 75 | L75F | Ctc | Ttc | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | W.1 | 0.008696 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | W.4 | 0.001351 |
ORF1ab/nsp5A-B | 75 | L75L | ctC | ctT | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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