CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 7 | A7A | A3270A | syn | gcA | gcG | 5732 | 5540 | 0.966504 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7A | A3270A | syn | gcA | gcT | 5732 | 122 | 0.021284 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7A | A3270A | syn | gcA | gcC | 5732 | 70 | 0.0122121 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7T | A3270T | nonsyn | Gca | Aca | 732 | 732 | 1 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7V | A3270V | nonsyn | gCa | gTa | 243 | 243 | 1 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7del | A3270del | del | GCA | --- | 59 | 59 | 1 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7S | A3270S | nonsyn | Gca | Tca | 52 | 52 | 1 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7P | A3270P | nonsyn | Gca | Cca | 12 | 12 | 1 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7E | A3270E | nonsyn | gCa | gAa | 8 | 8 | 1 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7G | A3270G | nonsyn | gCa | gGa | 4 | 3 | 0.75 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7G | A3270G | nonsyn | gCA | gGC | 4 | 1 | 0.25 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7del2 | A3270del2 | del | gCA | g-- | 2 | 2 | 1 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7del1 | A3270del1 | del | gCa | g-a | 2 | 1 | 0.5 | 10073-10075 |
ORF1ab/nsp5A-B | 7 | A7del1 | A3270del1 | del | Gca | -ca | 2 | 1 | 0.5 | 10073-10075 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 5540 | 5732 | All | 0.00106 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 122 | 5732 | All | 0.000023 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 70 | 5732 | All | 0.000013 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 5018 | 5019 | AY.3 | 0.049911 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 5019 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 732 | 732 | All | 0.00014 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 243 | 243 | All | 0.000046 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 165 | 165 | AY.44 | 0.001004 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 131 | 131 | B.1.632 | 0.879195 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 115 | 115 | AY.25 | 0.000692 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 90 | 112 | B.1.1.7 | 0.000081 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 21 | 112 | B.1.1.7 | 0.000019 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 1 | 112 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 87 | 87 | AY.5.3 | 0.029352 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 75 | 75 | B.1.1.7 | 0.000067 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 69 | 72 | AY.103 | 0.000428 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 2 | 72 | AY.103 | 0.000012 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 1 | 72 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 59 | 59 | All | 0.000011 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 52 | 52 | All | 0.00001 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 47 | 49 | B.1.617.2 | 0.000177 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 1 | 49 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 49 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 45 | 46 | AY.4 | 0.00007 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 46 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 44 | 44 | B.1.427 | 0.002222 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 43 | 44 | P.1 | 0.000677 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 44 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 41 | 41 | AY.117 | 0.003465 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 36 | 37 | AY.25 | 0.000217 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 1 | 37 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 35 | 35 | AY.99.2 | 0.003226 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 30 | 30 | AY.4 | 0.000047 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 17 | 17 | B.1.160 | 0.00053 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 7 | 15 | B.1 | 0.000064 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 6 | 15 | B.1 | 0.000055 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 2 | 15 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp5A-B | 7 | A7P | Gca | Cca | 12 | 12 | All | 0.000002 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 10 | 12 | AY.119 | 0.000353 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 2 | 12 | AY.119 | 0.000071 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 9 | 11 | AY.43 | 0.00004 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 2 | 11 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 8 | 10 | AY.102 | 0.000212 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 2 | 10 | AY.102 | 0.000053 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp5A-B | 7 | A7E | gCa | gAa | 8 | 8 | All | 0.000002 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 8 | 8 | AY.113 | 0.001139 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 8 | 8 | AY.116 | 0.002294 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 5 | 7 | AY.5 | 0.000103 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 2 | 7 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 7 | 7 | P.1.12 | 0.003388 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 4 | 5 | AY.84 | 0.00175 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 1 | 5 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 5 | 5 | B | 0.000639 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp5A-B | 7 | A7G | gCa | gGa | 3 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 7 | A7G | gCA | gGC | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 4 | 4 | B | 0.000511 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp5A-B | 7 | A7P | Gca | Cca | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 2 | 3 | AY.62 | 0.000871 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 3 | AY.62 | 0.000436 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 7 | A7P | Gca | Cca | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 3 | 3 | B.1.177.9 | 0.003995 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 3 | 3 | B.1.636 | 0.020134 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp5A-B | 7 | A7G | gCa | gGa | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 7 | A7del2 | gCA | g-- | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 7 | A7del1 | gCa | g-a | 1 | 2 | All | 0 |
ORF1ab/nsp5A-B | 7 | A7del1 | Gca | -ca | 1 | 2 | All | 0 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 2 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 2 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 7 | A7E | gCa | gAa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | B.1.1.378 | 0.014599 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 7 | A7P | Gca | Cca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp5A-B | 7 | A7E | gCa | gAa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 7 | A7del2 | gCA | g-- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 7 | A7E | gCa | gAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 7 | A7P | Gca | Cca | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp5A-B | 7 | A7E | gCa | gAa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp5A-B | 7 | A7E | gCa | gAa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp5A-B | 7 | A7del2 | gCA | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 7 | A7del1 | Gca | -ca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp5A-B | 7 | A7P | Gca | Cca | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 7 | A7del1 | gCa | g-a | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp5A-B | 7 | A7G | gCa | gGa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 7 | A7G | gCA | gGC | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 7 | A7E | gCa | gAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcG | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp5A-B | 7 | A7E | gCa | gAa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 7 | A7S | Gca | Tca | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp5A-B | 7 | A7P | Gca | Cca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 7 | A7A | gcA | gcT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 7 | A7del | GCA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 7 | A7P | Gca | Cca | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp5A-B | 7 | A7V | gCa | gTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp5A-B | 7 | A7T | Gca | Aca | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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