CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 65

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B65N65NN3328NsynaaTaaC12221222110247-10249
ORF1ab/nsp5A-B65N65SN3328SnonsynaAtaGt365365110247-10249
ORF1ab/nsp5A-B65N65delN3328deldelAAT---3333110247-10249
ORF1ab/nsp5A-B65N65HN3328HnonsynAatCat1515110247-10249
ORF1ab/nsp5A-B65N65YN3328YnonsynAatTat11100.90909110247-10249
ORF1ab/nsp5A-B65N65YN3328YnonsynAaTTaC1110.090909110247-10249
ORF1ab/nsp5A-B65N65IN3328InonsynaAtaTt88110247-10249
ORF1ab/nsp5A-B65N65KN3328KnonsynaaTaaA750.71428610247-10249
ORF1ab/nsp5A-B65N65KN3328KnonsynaaTaaG720.28571410247-10249
ORF1ab/nsp5A-B65N65del1N3328del1delaaTaa-630.510247-10249
ORF1ab/nsp5A-B65N65del1N3328del1delAat-at620.33333310247-10249
ORF1ab/nsp5A-B65N65del1N3328del1delAaT-aC610.16666710247-10249
ORF1ab/nsp5A-B65N65DN3328DnonsynAatGat22110247-10249
ORF1ab/nsp5A-B65N65TN3328TnonsynaAtaCt22110247-10249
ORF1ab/nsp5A-B65N65VN3328VnonsynAAtGTt22110247-10249
ORF1ab/nsp5A-B65N65del2N3328del2delAAT--A11110247-10249

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B65N65NaaTaaC12221222All0.000234
ORF1ab/nsp5A-B65N65NaaTaaC621621B.1.3620.956857
ORF1ab/nsp5A-B65N65SaAtaGt365365All0.00007
ORF1ab/nsp5A-B65N65NaaTaaC212212B.1.362.21
ORF1ab/nsp5A-B65N65SaAtaGt9898B.1.617.20.000369
ORF1ab/nsp5A-B65N65NaaTaaC6565AY.30.000647
ORF1ab/nsp5A-B65N65SaAtaGt6464B.1.1.70.000057
ORF1ab/nsp5A-B65N65NaaTaaC5858AY.470.001804
ORF1ab/nsp5A-B65N65NaaTaaC5454B.1.1770.000711
ORF1ab/nsp5A-B65N65SaAtaGt4646AY.430.000204
ORF1ab/nsp5A-B65N65SaAtaGt4545AY.40.00007
ORF1ab/nsp5A-B65N65NaaTaaC4242B.1.177.630.113514
ORF1ab/nsp5A-B65N65delAAT---3333All0.000006
ORF1ab/nsp5A-B65N65NaaTaaC2828AY.440.00017
ORF1ab/nsp5A-B65N65SaAtaGt2424B.1.1.2980.02069
ORF1ab/nsp5A-B65N65NaaTaaC2020B.1.1.70.000018
ORF1ab/nsp5A-B65N65HAatCat1515All0.000003
ORF1ab/nsp5A-B65N65NaaTaaC1515B.1.362.11
ORF1ab/nsp5A-B65N65SaAtaGt1313AY.1030.000081
ORF1ab/nsp5A-B65N65NaaTaaC1212AY.40.000019
ORF1ab/nsp5A-B65N65YAatTat1011All0.000002
ORF1ab/nsp5A-B65N65YAaTTaC111All0
ORF1ab/nsp5A-B65N65delAAT---1111B.1.1.70.00001
ORF1ab/nsp5A-B65N65NaaTaaC1010AY.1140.002311
ORF1ab/nsp5A-B65N65NaaTaaC1010B.1.1.500.006789
ORF1ab/nsp5A-B65N65NaaTaaC1010B.1.617.20.000038
ORF1ab/nsp5A-B65N65IaAtaTt88All0.000002
ORF1ab/nsp5A-B65N65SaAtaGt88AY.1020.000212
ORF1ab/nsp5A-B65N65KaaTaaA57All0.000001
ORF1ab/nsp5A-B65N65KaaTaaG27All0
ORF1ab/nsp5A-B65N65del1aaTaa-36All0.000001
ORF1ab/nsp5A-B65N65del1Aat-at26All0
ORF1ab/nsp5A-B65N65del1AaT-aC16All0
ORF1ab/nsp5A-B65N65SaAtaGt66AY.30.00006
ORF1ab/nsp5A-B65N65HAatCat66B.1.5250.000679
ORF1ab/nsp5A-B65N65NaaTaaC55AY.1030.000031
ORF1ab/nsp5A-B65N65NaaTaaC55B.10.000046
ORF1ab/nsp5A-B65N65YAatTat55B.1.1.70.000004
ORF1ab/nsp5A-B65N65NaaTaaC55B.1.20.000044
ORF1ab/nsp5A-B65N65SaAtaGt55B.1.36.290.002587
ORF1ab/nsp5A-B65N65delAAT---440.222222
ORF1ab/nsp5A-B65N65SaAtaGt44AY.1050.002572
ORF1ab/nsp5A-B65N65SaAtaGt44AY.440.000024
ORF1ab/nsp5A-B65N65NaaTaaC44B.1.10.000073
ORF1ab/nsp5A-B65N65SaAtaGt44B.1.1.3170.001647
ORF1ab/nsp5A-B65N65HAatCat44B.1.1.70.000004
ORF1ab/nsp5A-B65N65NaaTaaC33AY.430.000013
ORF1ab/nsp5A-B65N65SaAtaGt33AY.920.000862
ORF1ab/nsp5A-B65N65SaAtaGt33B.1.20.000026
ORF1ab/nsp5A-B65N65IaAtaTt220.111111
ORF1ab/nsp5A-B65N65KaaTaaG220.111111
ORF1ab/nsp5A-B65N65VAAtGTt220.111111
ORF1ab/nsp5A-B65N65NaaTaaC220.111111
ORF1ab/nsp5A-B65N65DAatGat22All0
ORF1ab/nsp5A-B65N65TaAtaCt22All0
ORF1ab/nsp5A-B65N65VAAtGTt22All0
ORF1ab/nsp5A-B65N65SaAtaGt22AY.1010.000981
ORF1ab/nsp5A-B65N65NaaTaaC22AY.200.000078
ORF1ab/nsp5A-B65N65NaaTaaC22AY.250.000012
ORF1ab/nsp5A-B65N65delAAT---22AY.40.000003
ORF1ab/nsp5A-B65N65delAAT---22AY.4.50.000215
ORF1ab/nsp5A-B65N65NaaTaaC22AY.60.000082
ORF1ab/nsp5A-B65N65KaaTaaA22B.10.000018
ORF1ab/nsp5A-B65N65SaAtaGt22B.10.000018
ORF1ab/nsp5A-B65N65SaAtaGt22B.1.10.000036
ORF1ab/nsp5A-B65N65YAatTat12B.1.10.000018
ORF1ab/nsp5A-B65N65YAaTTaC12B.1.10.000018
ORF1ab/nsp5A-B65N65SaAtaGt22B.1.1.3320.0625
ORF1ab/nsp5A-B65N65delAAT---22B.1.1770.000026
ORF1ab/nsp5A-B65N65SaAtaGt22B.1.1770.000026
ORF1ab/nsp5A-B65N65SaAtaGt22B.1.214.20.001199
ORF1ab/nsp5A-B65N65SaAtaGt22B.1.360.000292
ORF1ab/nsp5A-B65N65NaaTaaC22B.1.36.190.018519
ORF1ab/nsp5A-B65N65NaaTaaC22B.1.4270.000101
ORF1ab/nsp5A-B65N65YAatTat22B.1.5250.000226
ORF1ab/nsp5A-B65N65SaAtaGt22B.1.5950.000522
ORF1ab/nsp5A-B65N65SaAtaGt22B.1.6260.011429
ORF1ab/nsp5A-B65N65SaAtaGt22B.1.6370.000146
ORF1ab/nsp5A-B65N65NaaTaaC22B.1.9.50.011364
ORF1ab/nsp5A-B65N65NaaTaaC22P.10.000032
ORF1ab/nsp5A-B65N65NaaTaaC22P.1.140.000096
ORF1ab/nsp5A-B65N65TaAtaCt11A.23.10.000704
ORF1ab/nsp5A-B65N65NaaTaaC11A.60.005128
ORF1ab/nsp5A-B65N65del2AAT--A11All0
ORF1ab/nsp5A-B65N65SaAtaGt11AY.1000.000046
ORF1ab/nsp5A-B65N65delAAT---11AY.1000.000046
ORF1ab/nsp5A-B65N65NaaTaaC11AY.1000.000046
ORF1ab/nsp5A-B65N65NaaTaaC11AY.1020.000027
ORF1ab/nsp5A-B65N65NaaTaaC11AY.1050.000643
ORF1ab/nsp5A-B65N65NaaTaaC11AY.1100.000113
ORF1ab/nsp5A-B65N65delAAT---11AY.1170.000085
ORF1ab/nsp5A-B65N65del1Aat-at11AY.1190.000035
ORF1ab/nsp5A-B65N65SaAtaGt11AY.1190.000035
ORF1ab/nsp5A-B65N65NaaTaaC11AY.1210.000135
ORF1ab/nsp5A-B65N65NaaTaaC11AY.230.00007
ORF1ab/nsp5A-B65N65IaAtaTt11AY.250.000006
ORF1ab/nsp5A-B65N65SaAtaGt11AY.250.000006
ORF1ab/nsp5A-B65N65SaAtaGt11AY.270.000065
ORF1ab/nsp5A-B65N65NaaTaaC11AY.290.000016
ORF1ab/nsp5A-B65N65HAatCat11AY.30.00001
ORF1ab/nsp5A-B65N65SaAtaGt11AY.390.000025
ORF1ab/nsp5A-B65N65del1aaTaa-11AY.40.000002
ORF1ab/nsp5A-B65N65NaaTaaC11AY.4.20.000022
ORF1ab/nsp5A-B65N65delAAT---11AY.430.000004
ORF1ab/nsp5A-B65N65del1AaT-aC11AY.440.000006
ORF1ab/nsp5A-B65N65NaaTaaC11AY.460.000104
ORF1ab/nsp5A-B65N65IaAtaTt11AY.46.20.000635
ORF1ab/nsp5A-B65N65SaAtaGt11AY.470.000031
ORF1ab/nsp5A-B65N65NaaTaaC11AY.50.000021
ORF1ab/nsp5A-B65N65SaAtaGt11AY.50.000021
ORF1ab/nsp5A-B65N65SaAtaGt11AY.540.000095
ORF1ab/nsp5A-B65N65SaAtaGt11AY.580.000907
ORF1ab/nsp5A-B65N65SaAtaGt11AY.60.000041
ORF1ab/nsp5A-B65N65NaaTaaC11AY.7.10.000113
ORF1ab/nsp5A-B65N65SaAtaGt11AY.750.000056
ORF1ab/nsp5A-B65N65SaAtaGt11AY.80.000606
ORF1ab/nsp5A-B65N65IaAtaTt11AY.820.001357
ORF1ab/nsp5A-B65N65SaAtaGt11AY.840.000437
ORF1ab/nsp5A-B65N65HAatCat11AY.840.000437
ORF1ab/nsp5A-B65N65SaAtaGt11AY.90.000068
ORF1ab/nsp5A-B65N65HAatCat11B.10.000009
ORF1ab/nsp5A-B65N65delAAT---11B.10.000009
ORF1ab/nsp5A-B65N65del1aaTaa-11B.10.000009
ORF1ab/nsp5A-B65N65KaaTaaA11B.1.10.000018
ORF1ab/nsp5A-B65N65del1aaTaa-11B.1.10.000018
ORF1ab/nsp5A-B65N65NaaTaaC11B.1.1.1890.001513
ORF1ab/nsp5A-B65N65SaAtaGt11B.1.1.2140.000055
ORF1ab/nsp5A-B65N65IaAtaTt11B.1.1.3110.000358
ORF1ab/nsp5A-B65N65NaaTaaC11B.1.1.3180.000302
ORF1ab/nsp5A-B65N65KaaTaaA11B.1.1.390.00051
ORF1ab/nsp5A-B65N65TaAtaCt11B.1.1.70.000001
ORF1ab/nsp5A-B65N65NaaTaaC11B.1.1600.000031
ORF1ab/nsp5A-B65N65KaaTaaA11B.1.1770.000013
ORF1ab/nsp5A-B65N65delAAT---11B.1.177.40.000211
ORF1ab/nsp5A-B65N65delAAT---11B.1.177.810.000189
ORF1ab/nsp5A-B65N65delAAT---11B.1.1790.003759
ORF1ab/nsp5A-B65N65NaaTaaC11B.1.1820.007246
ORF1ab/nsp5A-B65N65del1Aat-at11B.1.20.000009
ORF1ab/nsp5A-B65N65DAatGat11B.1.20.000009
ORF1ab/nsp5A-B65N65del2AAT--A11B.1.20.000009
ORF1ab/nsp5A-B65N65DAatGat11B.1.221.20.004016
ORF1ab/nsp5A-B65N65NaaTaaC11B.1.2580.000067
ORF1ab/nsp5A-B65N65SaAtaGt11B.1.2580.000067
ORF1ab/nsp5A-B65N65YAatTat11B.1.3110.000275
ORF1ab/nsp5A-B65N65HAatCat11B.1.3510.00003
ORF1ab/nsp5A-B65N65delAAT---11B.1.36.180.00042
ORF1ab/nsp5A-B65N65NaaTaaC11B.1.3660.004878
ORF1ab/nsp5A-B65N65NaaTaaC11B.1.3670.000792
ORF1ab/nsp5A-B65N65NaaTaaC11B.1.5260.000024
ORF1ab/nsp5A-B65N65delAAT---11B.1.5960.000087
ORF1ab/nsp5A-B65N65SaAtaGt11B.1.5960.000087
ORF1ab/nsp5A-B65N65NaaTaaC11B.1.6040.017241
ORF1ab/nsp5A-B65N65IaAtaTt11B.1.617.20.000004
ORF1ab/nsp5A-B65N65delAAT---11B.1.6210.000089
ORF1ab/nsp5A-B65N65SaAtaGt11B.1.6330.041667
ORF1ab/nsp5A-B65N65YAatTat11B.1.6360.006711
ORF1ab/nsp5A-B65N65NaaTaaC11B.1.6370.000073
ORF1ab/nsp5A-B65N65HAatCat11C.350.000774
ORF1ab/nsp5A-B65N65delAAT---11C.350.000774
ORF1ab/nsp5A-B65N65NaaTaaC11C.370.000116
ORF1ab/nsp5A-B65N65NaaTaaC11D.20.000075
ORF1ab/nsp5A-B65N65IaAtaTt11D.20.000075
ORF1ab/nsp5A-B65N65delAAT---11N.40.004255
ORF1ab/nsp5A-B65N65NaaTaaC11P.20.000187