CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 45 & Codon = aTc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B45T45IT3308InonsynaCcaTc193519340.99948310187-10189

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B45T45IaCcaTc19341935All0.00037
ORF1ab/nsp5A-B45T45IaCcaTc10181018B.10.009324
ORF1ab/nsp5A-B45T45IaCcaTc7878AY.40.000121
ORF1ab/nsp5A-B45T45IaCcaTc7070B.1.5210.348259
ORF1ab/nsp5A-B45T45IaCcaTc6666AY.30.000656
ORF1ab/nsp5A-B45T45IaCcaTc4747B.1.2980.099366
ORF1ab/nsp5A-B45T45IaCcaTc4545B.1.1.70.00004
ORF1ab/nsp5A-B45T45IaCcaTc3939B.1.1770.000514
ORF1ab/nsp5A-B45T45IaCcaTc3838B.1.617.20.000143
ORF1ab/nsp5A-B45T45IaCcaTc3636B.1.5060.857143
ORF1ab/nsp5A-B45T45IaCcaTc3333AY.290.000521
ORF1ab/nsp5A-B45T45IaCcaTc3333AY.50.000681
ORF1ab/nsp5A-B45T45IaCcaTc2929B.1.360.004231
ORF1ab/nsp5A-B45T45IaCcaTc2626AY.250.000156
ORF1ab/nsp5A-B45T45IaCcaTc2222AY.1030.000137
ORF1ab/nsp5A-B45T45IaCcaTc2222C.160.02333
ORF1ab/nsp5A-B45T45IaCcaTc2020B.1.10.000363
ORF1ab/nsp5A-B45T45IaCcaTc1717AY.440.000103
ORF1ab/nsp5A-B45T45IaCcaTc1717B.1.2210.001208
ORF1ab/nsp5A-B45T45IaCcaTc1616AE.40.695652
ORF1ab/nsp5A-B45T45IaCcaTc1414AY.9.20.000514
ORF1ab/nsp5A-B45T45IaCcaTc1212B.1.20.000106
ORF1ab/nsp5A-B45T45IaCcaTc1111B.1.2340.001451
ORF1ab/nsp5A-B45T45IaCcaTc1111B.1.4290.000259
ORF1ab/nsp5A-B45T45IaCcaTc88AY.260.000226
ORF1ab/nsp5A-B45T45IaCcaTc88B.1.1.2140.000444
ORF1ab/nsp5A-B45T45IaCcaTc77AY.430.000031
ORF1ab/nsp5A-B45T45IaCcaTc77AY.980.000553
ORF1ab/nsp5A-B45T45IaCcaTc55AY.1020.000133
ORF1ab/nsp5A-B45T45IaCcaTc55AY.39.10.000198
ORF1ab/nsp5A-B45T45IaCcaTc55AY.4.20.000108
ORF1ab/nsp5A-B45T45IaCcaTc55AY.600.00469
ORF1ab/nsp5A-B45T45IaCcaTc55B.1.5820.002453
ORF1ab/nsp5A-B45T45IaCcaTc55P.10.000079
ORF1ab/nsp5A-B45T45IaCcaTc44AY.1210.000541
ORF1ab/nsp5A-B45T45IaCcaTc44AY.330.000267
ORF1ab/nsp5A-B45T45IaCcaTc44B.1.1.280.001245
ORF1ab/nsp5A-B45T45IaCcaTc44B.1.1.370.000771
ORF1ab/nsp5A-B45T45IaCcaTc44B.1.3110.001098
ORF1ab/nsp5A-B45T45IaCcaTc44B.1.5260.000094
ORF1ab/nsp5A-B45T45IaCcaTc44B.1.5960.000349
ORF1ab/nsp5A-B45T45IaCcaTc44B.1.6370.000292
ORF1ab/nsp5A-B45T45IaCcaTc44B.1.9.50.022727
ORF1ab/nsp5A-B45T45IaCcaTc33AY.200.000117
ORF1ab/nsp5A-B45T45IaCcaTc33B.1.1600.000094
ORF1ab/nsp5A-B45T45IaCcaTc23B.1.3670.001585
ORF1ab/nsp5A-B45T45IaCcaTc33B.1.5650.002431
ORF1ab/nsp5A-B45T45IaCcaTc22A.10.000564
ORF1ab/nsp5A-B45T45IaCcaTc22AY.1000.000092
ORF1ab/nsp5A-B45T45IaCcaTc22AY.1180.000125
ORF1ab/nsp5A-B45T45IaCcaTc22AY.1190.000071
ORF1ab/nsp5A-B45T45IaCcaTc22AY.3.10.000171
ORF1ab/nsp5A-B45T45IaCcaTc22AY.390.000049
ORF1ab/nsp5A-B45T45IaCcaTc22AY.460.000208
ORF1ab/nsp5A-B45T45IaCcaTc22AY.610.00021
ORF1ab/nsp5A-B45T45IaCcaTc22AY.90.000135
ORF1ab/nsp5A-B45T45IaCcaTc22B.1.1.1180.020408
ORF1ab/nsp5A-B45T45IaCcaTc22B.1.1.3480.001592
ORF1ab/nsp5A-B45T45IaCcaTc22B.1.1.3980.006452
ORF1ab/nsp5A-B45T45IaCcaTc22B.1.177.860.000367
ORF1ab/nsp5A-B45T45IaCcaTc22B.1.258.140.001961
ORF1ab/nsp5A-B45T45IaCcaTc22B.1.2650.002541
ORF1ab/nsp5A-B45T45IaCcaTc22B.1.3510.000059
ORF1ab/nsp5A-B45T45IaCcaTc22B.1.3690.00057
ORF1ab/nsp5A-B45T45IaCcaTc22B.1.617.10.000258
ORF1ab/nsp5A-B45T45IaCcaTc22B.30.001661
ORF1ab/nsp5A-B45T45IaCcaTc22D.20.00015
ORF1ab/nsp5A-B45T45IaCcaTc22Q.10.000253
ORF1ab/nsp5A-B45T45IaCcaTc11A.20.000662
ORF1ab/nsp5A-B45T45IaCcaTc11AY.1060.000335
ORF1ab/nsp5A-B45T45IaCcaTc11AY.1070.000466
ORF1ab/nsp5A-B45T45IaCcaTc11AY.1140.000231
ORF1ab/nsp5A-B45T45IaCcaTc11AY.120.10.000321
ORF1ab/nsp5A-B45T45IaCcaTc11AY.120.20.001285
ORF1ab/nsp5A-B45T45IaCcaTc11AY.140.000088
ORF1ab/nsp5A-B45T45IaCcaTc11AY.340.000097
ORF1ab/nsp5A-B45T45IaCcaTc11AY.4.50.000107
ORF1ab/nsp5A-B45T45IaCcaTc11AY.410.000294
ORF1ab/nsp5A-B45T45IaCcaTc11AY.420.00004
ORF1ab/nsp5A-B45T45IaCcaTc11AY.560.001605
ORF1ab/nsp5A-B45T45IaCcaTc11AY.60.000041
ORF1ab/nsp5A-B45T45IaCcaTc11AY.950.000761
ORF1ab/nsp5A-B45T45IaCcaTc11B0.000128
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.100.001115
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.1070.032258
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.1210.002427
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.1230.017857
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.1330.008475
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.1480.008772
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.2160.00089
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.2560.013699
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.3170.000412
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.3360.016667
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.3720.000689
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.4320.001266
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.5190.00004
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.700.000341
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1.900.1
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.177.210.000076
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.177.570.000281
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.177.730.000566
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.177.810.000189
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.1940.04
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.2060.000816
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.2580.000067
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.258.160.001637
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.258.40.003448
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.2840.013158
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.3490.000715
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.36.290.000517
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.3700.008
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.3750.00082
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.3960.000706
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.4040.001302
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.4130.004255
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.4240.008065
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.4270.00005
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.438.10.000107
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.4560.003268
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.4590.004082
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.5090.000866
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.5770.000687
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.6180.004032
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.6210.000089
ORF1ab/nsp5A-B45T45IaCcaTc11B.1.88.10.004808
ORF1ab/nsp5A-B45T45IaCcaTc11B.120.00641
ORF1ab/nsp5A-B45T45IaCcaTc11B.190.037037
ORF1ab/nsp5A-B45T45IaCcaTc11B.200.023256
ORF1ab/nsp5A-B45T45IaCcaTc11B.400.000364
ORF1ab/nsp5A-B45T45IaCcaTc11C.1.20.004255
ORF1ab/nsp5A-B45T45IaCcaTc11C.36.10.004149
ORF1ab/nsp5A-B45T45IaCcaTc11P.20.000187
ORF1ab/nsp5A-B45T45IaCcaTc11Q.80.000165