CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 34

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	34	D34D	D3297D	syn	gaC	gaT	14443	14443	1	10154-10156
ORF1ab/nsp5A-B	34	D34N	D3297N	nonsyn	Gac	Aac	149	148	0.993289	10154-10156
ORF1ab/nsp5A-B	34	D34N	D3297N	nonsyn	GaC	AaT	149	1	0.00671141	10154-10156
ORF1ab/nsp5A-B	34	D34G	D3297G	nonsyn	gAc	gGc	121	121	1	10154-10156
ORF1ab/nsp5A-B	34	D34del	D3297del	del	GAC	---	42	42	1	10154-10156
ORF1ab/nsp5A-B	34	D34E	D3297E	nonsyn	gaC	gaA	38	33	0.868421	10154-10156
ORF1ab/nsp5A-B	34	D34E	D3297E	nonsyn	gaC	gaG	38	5	0.131579	10154-10156
ORF1ab/nsp5A-B	34	D34Y	D3297Y	nonsyn	Gac	Tac	22	21	0.954545	10154-10156
ORF1ab/nsp5A-B	34	D34Y	D3297Y	nonsyn	GaC	TaT	22	1	0.0454545	10154-10156
ORF1ab/nsp5A-B	34	D34A	D3297A	nonsyn	gAc	gCc	13	13	1	10154-10156
ORF1ab/nsp5A-B	34	D34H	D3297H	nonsyn	Gac	Cac	12	12	1	10154-10156
ORF1ab/nsp5A-B	34	D34V	D3297V	nonsyn	gAc	gTc	5	3	0.6	10154-10156
ORF1ab/nsp5A-B	34	D34V	D3297V	nonsyn	gAC	gTA	5	2	0.4	10154-10156
ORF1ab/nsp5A-B	34	D34del1	D3297del1	del	gaC	ga-	2	2	1	10154-10156
ORF1ab/nsp5A-B	34	D34K	D3297K	nonsyn	GaC	AaA	2	2	1	10154-10156
ORF1ab/nsp5A-B	34	D34S	D3297S	nonsyn	GAC	TCT	2	2	1	10154-10156
ORF1ab/nsp5A-B	34	D34X	D3297X	nonsyn	GaC	TaG	2	1	0.5	10154-10156
ORF1ab/nsp5A-B	34	D34I	D3297I	nonsyn	GAc	ATc	2	1	0.5	10154-10156
ORF1ab/nsp5A-B	34	D34I	D3297I	nonsyn	GAC	ATA	2	1	0.5	10154-10156
ORF1ab/nsp5A-B	34	D34X	D3297X	nonsyn	GaC	TaA	2	1	0.5	10154-10156
ORF1ab/nsp5A-B	34	D34del2	D3297del2	del	GAc	--c	1	1	1	10154-10156
ORF1ab/nsp5A-B	34	D34F	D3297F	nonsyn	GAc	TTc	1	1	1	10154-10156
ORF1ab/nsp5A-B	34	D34C	D3297C	nonsyn	GAC	TGT	1	1	1	10154-10156
ORF1ab/nsp5A-B	34	D34L	D3297L	nonsyn	GAC	TTA	1	1	1	10154-10156

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	14443	14443	All	0.002762
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4260	4260	B.1.1.7	0.003814
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1516	1516	AY.4	0.00236
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1439	1439	B.1.1.214	0.079803
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	807	807	AY.43	0.003575
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	652	652	B.1.2	0.005741
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	615	615	B.1.617.2	0.002316
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	284	284	AY.5	0.005864
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	269	269	B.1.1.420	0.270624
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	226	226	B.1.243	0.015726
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	170	170	B.1	0.001557
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	166	166	AY.98.1	0.00804
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	164	164	AY.3	0.001631
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	162	162	AY.120	0.006023
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	158	158	B.1.623	0.084764
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	157	157	AY.20	0.006102
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	148	149	All	0.000028
ORF1ab/nsp5A-B	34	D34N	GaC	AaT	1	149	All	0
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	144	144	AY.44	0.000876
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	142	142	AY.103	0.000882
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	142	142	B.1.1	0.002576
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	138	138	AY.46.4	0.022701
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	121	121	All	0.000023
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	118	118	B.1.177	0.001554
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	106	106	P.1	0.00167
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	94	94	AY.25	0.000565
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	94	94	B.1.177.78	0.912621
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	83	83	AY.119	0.002931
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	83	83	B.1.1.519	0.003296
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	77	77	B.1.429	0.001812
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	72	72	AY.6	0.002961
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	64	64	AY.100	0.002944
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	63	63	B.1.160	0.001965
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	61	61	AY.29	0.000962
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	59	59	AY.102	0.001564
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	59	59	B.1.400	0.025311
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	57	57	B.1.1.7	0.000051
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	55	55	AY.4	0.000086
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	54	54	B.1.160.24	0.238938
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	52	52	AY.39	0.001285
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	48	48	AY.26	0.001359
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	47	47	AY.24	0.020259
ORF1ab/nsp5A-B	34	D34del	GAC	---	42	42	All	0.000008
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	42	42	B.1.1.518	0.265823
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	40	40	AY.14	0.003521
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	40	40	D.2	0.003002
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	39	39	AY.99.2	0.003594
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	39	39	B.1.351	0.001159
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	33	38	All	0.000006
ORF1ab/nsp5A-B	34	D34E	gaC	gaG	5	38	All	0.000001
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	38	38	B.1.221	0.002699
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	37	37	AY.23	0.002581
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	34	34	AY.42	0.001368
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	32	32	B.1.160	0.000998
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	31	31	AY.47	0.000964
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	31	31	B.1.177.74	0.469697
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	31	31	B.1.36	0.004523
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	30	30	AY.113	0.004272
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	26	26	B.1.526	0.000611
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	25	25	B.1.1.294	0.031646
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	25	25	D.2	0.001876
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	24	24	AY.3.1	0.002046
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	24	24	B.1.621	0.002124
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	23	23	AY.20	0.000894
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	23	23	AY.75	0.001289
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	21	22	All	0.000004
ORF1ab/nsp5A-B	34	D34Y	GaC	TaT	1	22	All	0
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	22	22	P.1.14	0.001052
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	20	20	AY.9.2	0.000735
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	18	18	B.1.214.2	0.010791
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	17	17	AY.118	0.001065
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	17	17	B.1.1.429	0.078341
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	17	17	B.1.139	0.012463
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	17	17	B.1.177.86	0.003119
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	16	16	AY.110	0.001803
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	16	16	AY.39.1	0.000634
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	16	16	B.1.427	0.000808
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	16	16	B.1.596	0.001394
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	16	16	P.2	0.002986
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	15	15	B.1.243	0.001044
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	15	15	B.1.36.29	0.00776
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	14	14	AY.45	0.001704
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	14	14	B.1.1.306	0.006138
ORF1ab/nsp5A-B	34	D34del	GAC	---	14	14	B.1.1.7	0.000013
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	14	14	B.1.258.17	0.001456
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	13	13	All	0.000002
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	13	13	AY.114	0.003004
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	13	13	AY.33	0.000868
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	13	13	AY.67	0.006035
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	13	13	AY.98	0.001027
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	13	13	Q.3	0.001885
ORF1ab/nsp5A-B	34	D34H	Gac	Cac	12	12	All	0.000002
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	12	12	AY.85	0.005126
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	11	12	B.1.1.7	0.00001
ORF1ab/nsp5A-B	34	D34N	GaC	AaT	1	12	B.1.1.7	0.000001
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	11	11	A.2.5	0.005489
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	11	11	AY.93	0.003004
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	11	11	B.1.637	0.000804
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	10	10	AY.4.2	0.000217
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	10	10	AY.63	0.003868
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	10	10	B.1.110.1	1
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	10	10	B.1.177.12	0.001517
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	10	10	B.1.349	0.007148
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	10	10	Q.8	0.001649
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	9	9	AY.5.3	0.003036
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	9	9	B.1.369	0.002567
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	9	9	B.1.525	0.001018
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	8	8	AY.121	0.001083
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	8	8	AY.4.2.1	0.001192
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	8	8	AY.71	0.0038
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	8	8	B.1.1.189	0.012103
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	8	8	B.1.1.317	0.003294
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	8	8	B.1.177.60	0.001747
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	8	8	B.1.619.1	0.005131
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	8	8	C.37	0.000929
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	7	7	AY.27	0.000453
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	7	7	AY.46	0.000729
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	7	7	AY.52	0.0057
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	7	7	B.1.1.216	0.006233
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	7	7	B.1.258	0.000466
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	7	7	B.1.396	0.00494
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	7	7	B.1.595	0.001827
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	AY.12	0.001896
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	AY.74	0.000694
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	B.1.1.192	0.013857
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	B.1.1.305	0.023166
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	B.1.1.318	0.001811
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	B.1.1.70	0.002046
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	B.1.177.23	0.019417
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	B.1.203	0.375
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	B.1.36.18	0.002521
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	B.1.438.1	0.000644
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	P.1.15	0.001394
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	6	6	R.1	0.00054
ORF1ab/nsp5A-B	34	D34V	gAc	gTc	3	5	All	0.000001
ORF1ab/nsp5A-B	34	D34V	gAC	gTA	2	5	All	0
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	5	5	AY.4	0.000008
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	5	5	AY.41	0.00147
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	5	5	B.1.1.298	0.00431
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	5	5	B.1.1.348	0.003981
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	5	5	B.1.110.3	0.003592
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	5	5	B.1.177.21	0.000382
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	5	5	B.1.565	0.004052
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	5	5	L.4	0.25
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	5	5	P.1.7	0.001596
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	AY.116	0.001147
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	AY.117	0.000338
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	AY.13	0.000644
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	AY.34	0.000388
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	AY.4.5	0.00043
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	AY.54	0.000381
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	AY.9	0.00027
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	AY.92	0.001149
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	AY.99	0.004197
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	B.1.1.176	0.001757
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	B.1.1.28	0.001245
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	B.1.1.448	0.00813
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	4	4	B.1.1.7	0.000004
ORF1ab/nsp5A-B	34	D34V	gAc	gTc	2	4	B.1.1.7	0.000002
ORF1ab/nsp5A-B	34	D34V	gAC	gTA	2	4	B.1.1.7	0.000002
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	B.1.177.44	0.002076
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	B.1.287	0.121212
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	B.1.428	0.004082
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	B.1.551	0.005161
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	B.1.617.1	0.000516
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	4	4	P.1.17	0.000647
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	A.2	0.001985
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	AD.2	0.000657
ORF1ab/nsp5A-B	34	D34E	gaC	gaG	3	3	AY.100	0.000138
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	AY.109	0.002219
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	AY.21	0.005693
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	AY.28	0.005671
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	AY.32	0.001597
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	AY.37	0.000948
ORF1ab/nsp5A-B	34	D34del	GAC	---	3	3	AY.4.5	0.000322
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	AY.61	0.000314
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	3	3	AY.61	0.000314
ORF1ab/nsp5A-B	34	D34H	Gac	Cac	3	3	AY.62	0.001307
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	AY.69	0.00056
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	AY.7	0.000588
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	AY.87	0.002498
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B	0.000383
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	3	3	B.1	0.000027
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	3	3	B.1	0.000027
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.1.1	0.00098
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.1.210	0.017143
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.1.316	0.002775
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.1.33	0.001263
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.1.37	0.000579
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.1.412	0.022901
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.1.50	0.002037
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.1.54	0.009063
ORF1ab/nsp5A-B	34	D34del	GAC	---	3	3	B.1.177	0.00004
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.220	0.032609
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.397	0.014563
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	3	3	B.1.398	0.008929
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.468	0.017143
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.564	0.001278
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.568	0.003333
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	B.1.575	0.00091
ORF1ab/nsp5A-B	34	D34H	Gac	Cac	3	3	B.1.617.2	0.000011
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	3	3	B.1.617.2	0.000011
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	L.1	0.005714
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	3	3	P.1.12	0.001452
ORF1ab/nsp5A-B	34	D34K	GaC	AaA	2	2	All	0
ORF1ab/nsp5A-B	34	D34S	GAC	TCT	2	2	All	0
ORF1ab/nsp5A-B	34	D34del1	gaC	ga-	2	2	All	0
ORF1ab/nsp5A-B	34	D34X	GaC	TaA	1	2	All	0
ORF1ab/nsp5A-B	34	D34I	GAC	ATA	1	2	All	0
ORF1ab/nsp5A-B	34	D34I	GAc	ATc	1	2	All	0
ORF1ab/nsp5A-B	34	D34X	GaC	TaG	1	2	All	0
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AU.3	0.004219
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	2	2	AY.103	0.000012
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.106	0.00067
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.107	0.000932
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	2	2	AY.119	0.000071
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.120.1	0.000642
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	2	2	AY.27	0.000129
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	2	2	AY.3	0.00002
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.36	0.000296
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	2	2	AY.4	0.000003
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	2	2	AY.4	0.000003
ORF1ab/nsp5A-B	34	D34H	Gac	Cac	2	2	AY.43	0.000009
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	2	2	AY.43	0.000009
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	2	2	AY.44	0.000012
ORF1ab/nsp5A-B	34	D34del	GAC	---	2	2	AY.46.2	0.001271
ORF1ab/nsp5A-B	34	D34S	GAC	TCT	2	2	AY.46.6	0.000144
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.48	0.00093
ORF1ab/nsp5A-B	34	D34del	GAC	---	2	2	AY.5	0.000041
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.5.4	0.000553
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.53	0.000575
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.58	0.001815
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.59	0.001059
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.65	0.001066
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.68	0.000547
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.7.1	0.000225
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.75.1	0.000361
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	2	2	AY.77	0.002255
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.77	0.002255
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.80	0.002257
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.91	0.001461
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	AY.99.1	0.003106
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	2	2	B.1	0.000018
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.1.174	0.006757
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	2	2	B.1.1.222	0.000408
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.1.25	0.001137
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.1.311	0.000716
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.1.337	0.007194
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.1.377	0.002762
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.1.39	0.001019
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.1.434	0.000697
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.1.523	0.003125
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.1.525	0.010929
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	2	2	B.1.1.7	0.000002
ORF1ab/nsp5A-B	34	D34K	GaC	AaA	2	2	B.1.1.7	0.000002
ORF1ab/nsp5A-B	34	D34I	GAC	ATA	1	2	B.1.1.7	0.000001
ORF1ab/nsp5A-B	34	D34I	GAc	ATc	1	2	B.1.1.7	0.000001
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.127	0.004396
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.149	0.006849
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.157	0.00597
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.160.20	0.017857
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.177.15	0.001262
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.177.4	0.000422
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	2	2	B.1.177.4	0.000422
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.177.42	0.001789
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.177.56	0.001335
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.177.57	0.000562
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.177.7	0.00033
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.177.75	0.002081
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.177.81	0.000379
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	2	2	B.1.2	0.000018
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	2	2	B.1.2	0.000018
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.258.11	0.000793
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.324	0.00321
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.361	0.002577
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.389	0.002004
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.396	0.001411
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.399	0.003868
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.436	0.002058
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.469	0.00722
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.470	0.002809
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.499	0.002101
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.517	0.000854
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.538	0.016129
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.582	0.000981
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.627	0.00404
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	B.1.628	0.000705
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	C.16	0.002121
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	C.36	0.001821
ORF1ab/nsp5A-B	34	D34Y	GaC	TaT	1	2	D.2	0.000075
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	2	D.2	0.000075
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	N.5	0.003534
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	2	2	U.2	0.017544
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	A	0.000387
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	A.2.2	0.001689
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	A.28	0.002646
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AE.8	0.000489
ORF1ab/nsp5A-B	34	D34F	GAc	TTc	1	1	All	0
ORF1ab/nsp5A-B	34	D34C	GAC	TGT	1	1	All	0
ORF1ab/nsp5A-B	34	D34del2	GAc	--c	1	1	All	0
ORF1ab/nsp5A-B	34	D34L	GAC	TTA	1	1	All	0
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AT.1	0.005128
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.101	0.00049
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	1	1	AY.102	0.000027
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	1	1	AY.103	0.000006
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.105	0.000643
ORF1ab/nsp5A-B	34	D34H	Gac	Cac	1	1	AY.118	0.000063
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	1	1	AY.120	0.000037
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.16	0.00038
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.23.1	0.000417
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	1	1	AY.26	0.000028
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.29.1	0.000221
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	1	1	AY.3	0.00001
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	AY.32	0.000532
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.35	0.000233
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	AY.4	0.000002
ORF1ab/nsp5A-B	34	D34H	Gac	Cac	1	1	AY.4	0.000002
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.4.4	0.000409
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	34	D34H	Gac	Cac	1	1	AY.46	0.000104
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.46.2	0.000635
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.49	0.003195
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	1	1	AY.5	0.000021
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.50	0.000799
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.51	0.000909
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.55	0.000917
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.56	0.001605
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	1	1	AY.74	0.000116
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.76	0.004831
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.78	0.001541
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.81	0.001992
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.82	0.001357
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.9.1	0.000084
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AY.90	0.000684
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	1	1	AY.98.1	0.000048
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	AY.99.1	0.001553
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	AZ.2	0.000821
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	1	1	B	0.000128
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	B	0.000128
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.121	0.002427
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.158	0.012195
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.1.159	0.004673
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.169	0.018182
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.170	0.001247
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.171	0.003676
ORF1ab/nsp5A-B	34	D34H	Gac	Cac	1	1	B.1.1.186	0.003436
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	B.1.1.194	0.00495
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.198	0.001468
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.207	0.001182
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	B.1.1.216	0.00089
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.219	0.005
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.221	0.010101
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.222	0.000204
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.258	0.003257
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.277	0.000759
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.289	0.002083
ORF1ab/nsp5A-B	34	D34del1	gaC	ga-	1	1	B.1.1.306	0.000438
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.322	0.008772
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	1	1	B.1.1.328	0.016949
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	1	1	B.1.1.335	0.012987
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.344	0.010753
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.351	0.002793
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.368	0.003086
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.376	0.005952
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.1.39	0.00051
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.404	0.015873
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.409	0.002833
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.413	0.006897
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	1	1	B.1.1.434	0.000349
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.464	0.001473
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.56	0.017857
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.63	0.000386
ORF1ab/nsp5A-B	34	D34X	GaC	TaA	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	34	D34F	GAc	TTc	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	34	D34del1	gaC	ga-	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	34	D34del2	GAc	--c	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	34	D34L	GAC	TTA	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	1	1	B.1.1.70	0.000341
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.8	0.003584
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.1.89	0.006061
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.111	0.001175
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.126	0.001276
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.142	0.002899
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.160.8	0.001289
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.161	0.017241
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	B.1.177	0.000013
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	1	1	B.1.177	0.000013
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.177.10	0.000878
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.177.10	0.000878
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.177.38	0.010417
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.177.6	0.000977
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.177.81	0.000189
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.177.83	0.001481
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	B.1.177.86	0.000183
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.179	0.003759
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.199	0.004132
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	B.1.210	0.002132
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.218	0.005155
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.23	0.006061
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.239	0.001221
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.240	0.000216
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.241	0.000812
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	B.1.243	0.00007
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	B.1.258	0.000067
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.258.14	0.00098
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.258.3	0.001675
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.289	0.00266
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.3	0.002618
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.305	0.002151
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.311	0.000275
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	1	1	B.1.351	0.00003
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	1	1	B.1.351	0.00003
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.351.5	0.0006
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.36.1	0.00114
ORF1ab/nsp5A-B	34	D34X	GaC	TaG	1	1	B.1.36.10	0.004785
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	B.1.36.10	0.004785
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.36.10	0.004785
ORF1ab/nsp5A-B	34	D34E	gaC	gaG	1	1	B.1.36.10	0.004785
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.36.31	0.001751
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.36.38	0.001642
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.367	0.000792
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.377	0.004566
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.378	0.006849
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.398	0.002976
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.403	0.003268
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.408	0.00369
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.416	0.001269
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.420	0.010417
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.432	0.011236
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.466.2	0.000391
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.480	0.002488
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.509	0.000866
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.521	0.004975
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.524	0.001406
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.558	0.004566
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.561	0.000397
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.576	0.000907
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.595.3	0.026316
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.599	0.00365
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	34	D34C	GAC	TGT	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.617.3	0.002985
ORF1ab/nsp5A-B	34	D34N	Gac	Aac	1	1	B.1.620	0.000946
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.620	0.000946
ORF1ab/nsp5A-B	34	D34A	gAc	gCc	1	1	B.1.621	0.000089
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	B.1.621	0.000089
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.621.1	0.000506
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.1.91	0.002075
ORF1ab/nsp5A-B	34	D34E	gaC	gaA	1	1	B.1.93	0.000934
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.29	0.003509
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.3.1	0.001658
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.4	0.002208
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	B.6	0.00091
ORF1ab/nsp5A-B	34	D34Y	Gac	Tac	1	1	B.6.6	0.000889
ORF1ab/nsp5A-B	34	D34E	gaC	gaG	1	1	B.61	0.005747
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	C.13	0.025641
ORF1ab/nsp5A-B	34	D34V	gAc	gTc	1	1	C.35	0.000774
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	C.36.3	0.000567
ORF1ab/nsp5A-B	34	D34del	GAC	---	1	1	N.4	0.004255
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	P.1.10	0.000269
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	P.1.2	0.001156
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	P.1.4	0.000977
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	1	1	P.1.7	0.000319
ORF1ab/nsp5A-B	34	D34D	gaC	gaT	1	1	P.4	0.003802
ORF1ab/nsp5A-B	34	D34G	gAc	gGc	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.