CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 33

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp5A-B	33	D33D	D3296D	syn	gaT	gaC	1219	1219	1	10151-10153
ORF1ab/nsp5A-B	33	D33G	D3296G	nonsyn	gAt	gGt	749	749	1	10151-10153
ORF1ab/nsp5A-B	33	D33Y	D3296Y	nonsyn	Gat	Tat	160	160	1	10151-10153
ORF1ab/nsp5A-B	33	D33A	D3296A	nonsyn	gAt	gCt	106	105	0.990566	10151-10153
ORF1ab/nsp5A-B	33	D33A	D3296A	nonsyn	gAT	gCA	106	1	0.00943396	10151-10153
ORF1ab/nsp5A-B	33	D33N	D3296N	nonsyn	Gat	Aat	55	55	1	10151-10153
ORF1ab/nsp5A-B	33	D33del	D3296del	del	GAT	---	46	46	1	10151-10153
ORF1ab/nsp5A-B	33	D33E	D3296E	nonsyn	gaT	gaA	40	33	0.825	10151-10153
ORF1ab/nsp5A-B	33	D33E	D3296E	nonsyn	gaT	gaG	40	7	0.175	10151-10153
ORF1ab/nsp5A-B	33	D33V	D3296V	nonsyn	gAt	gTt	7	7	1	10151-10153
ORF1ab/nsp5A-B	33	D33H	D3296H	nonsyn	Gat	Cat	6	6	1	10151-10153
ORF1ab/nsp5A-B	33	D33del1	D3296del1	del	gaT	ga-	3	2	0.666667	10151-10153
ORF1ab/nsp5A-B	33	D33del1	D3296del1	del	Gat	-at	3	1	0.333333	10151-10153
ORF1ab/nsp5A-B	33	D33T	D3296T	nonsyn	GAt	ACt	2	1	0.5	10151-10153
ORF1ab/nsp5A-B	33	D33T	D3296T	nonsyn	GAT	ACA	2	1	0.5	10151-10153
ORF1ab/nsp5A-B	33	D33P	D3296P	nonsyn	GAT	CCA	2	1	0.5	10151-10153
ORF1ab/nsp5A-B	33	D33P	D3296P	nonsyn	GAt	CCt	2	1	0.5	10151-10153
ORF1ab/nsp5A-B	33	D33C	D3296C	nonsyn	GAt	TGt	1	1	1	10151-10153
ORF1ab/nsp5A-B	33	D33Q	D3296Q	nonsyn	GaT	CaA	1	1	1	10151-10153
ORF1ab/nsp5A-B	33	D33K	D3296K	nonsyn	GaT	AaA	1	1	1	10151-10153
ORF1ab/nsp5A-B	33	D33del2	D3296del2	del	gAT	g--	1	1	1	10151-10153
ORF1ab/nsp5A-B	33	D33F	D3296F	nonsyn	GAt	TTt	1	1	1	10151-10153

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1219	1219	All	0.000233
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	749	749	All	0.000143
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	299	299	B.1.1.7	0.000268
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	218	218	B.1.541	0.964602
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	169	169	AY.34.1	0.086181
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	160	160	All	0.000031
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	128	128	B.1.1.7	0.000115
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	118	118	R.1	0.010621
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	107	107	AY.4	0.000167
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	105	106	All	0.00002
ORF1ab/nsp5A-B	33	D33A	gAT	gCA	1	106	All	0
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	102	102	AD.1	0.419753
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	98	98	B.1.36.9	0.315113
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	93	93	AY.44	0.000566
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	80	80	B.1	0.000733
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	75	75	B.1.36.21	0.161987
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	61	61	AY.4	0.000095
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	55	55	All	0.000011
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	48	48	B.1.1	0.000871
ORF1ab/nsp5A-B	33	D33del	GAT	---	46	46	All	0.000009
ORF1ab/nsp5A-B	33	D33E	gaT	gaA	33	40	All	0.000006
ORF1ab/nsp5A-B	33	D33E	gaT	gaG	7	40	All	0.000001
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	36	36	AY.4	0.000056
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	36	36	B.1.617.2	0.000136
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	24	24	B.1.1.7	0.000021
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	24	24	B.1.617.2	0.00009
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	23	23	B.1.2	0.000203
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	16	16	AY.4	0.000025
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	16	16	AY.42	0.000644
ORF1ab/nsp5A-B	33	D33del	GAT	---	16	16	B.1.1.7	0.000014
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	16	16	B.1.617.2	0.00006
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	15	15	B.1.429	0.000353
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	14	14	AY.44	0.000085
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	13	13	AY.25	0.000078
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	13	13	B.1	0.000119
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	13	13	Q.8	0.002144
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	11	11	B.1	0.000101
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	10	10	AY.103	0.000062
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	10	10	AY.98.1	0.000484
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	10	10	B.1.2	0.000088
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	9	9	AY.100	0.000414
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	9	9	AY.43	0.00004
ORF1ab/nsp5A-B	33	D33E	gaT	gaA	9	9	B.1.1.7	0.000008
ORF1ab/nsp5A-B	33	D33E	gaT	gaA	9	9	B.1.177.8	0.006772
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	8	8	AY.102	0.000212
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	8	8	AY.34	0.000776
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	8	8	AY.61	0.000838
ORF1ab/nsp5A-B	33	D33V	gAt	gTt	7	7	All	0.000001
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	7	7	AY.43	0.000031
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	7	7	B.1.1.241	0.014493
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	7	7	C.36	0.006375
ORF1ab/nsp5A-B	33	D33H	Gat	Cat	6	6	All	0.000001
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	6	6	AY.25	0.000036
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	6	6	AY.3	0.00006
ORF1ab/nsp5A-B	33	D33E	gaT	gaA	5	6	AY.4	0.000008
ORF1ab/nsp5A-B	33	D33E	gaT	gaG	1	6	AY.4	0.000002
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	6	6	AY.48	0.002791
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	6	6	AY.86	0.004979
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	6	6	B.1.526	0.000141
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	5	5	AY.39	0.000124
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	5	5	AY.4	0.000008
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	5	5	AY.43	0.000022
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	5	5	AY.46	0.00052
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	5	5	AY.98	0.000395
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	5	5	B.1.2	0.000044
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	5	5	B.1.2	0.000044
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	4	4	AY.103	0.000025
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	4	4	AY.20	0.000155
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	4	4	AY.25	0.000024
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	4	4	AY.44	0.000024
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	4	4	AY.85	0.001709
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	4	4	B.1.1.7	0.000004
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	3	4	B.1.1.7	0.000003
ORF1ab/nsp5A-B	33	D33A	gAT	gCA	1	4	B.1.1.7	0.000001
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	4	4	B.1.177	0.000053
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	4	4	B.1.2	0.000035
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	4	4	P.1	0.000063
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	4	4	W.4	0.005405
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	3	3	A	0.001161
ORF1ab/nsp5A-B	33	D33del1	gaT	ga-	2	3	All	0
ORF1ab/nsp5A-B	33	D33del1	Gat	-at	1	3	All	0
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	3	3	AY.100	0.000138
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	3	3	AY.103	0.000019
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	3	3	AY.116	0.00086
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	3	3	AY.118	0.000188
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	3	3	AY.19	0.003421
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	3	3	AY.23	0.000209
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	3	3	AY.3	0.00003
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	3	3	AY.39	0.000074
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	3	3	AY.39.1	0.000119
ORF1ab/nsp5A-B	33	D33H	Gat	Cat	3	3	AY.4	0.000005
ORF1ab/nsp5A-B	33	D33del	GAT	---	3	3	AY.4.5	0.000322
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	3	3	AY.42	0.000121
ORF1ab/nsp5A-B	33	D33E	gaT	gaA	2	3	B.1	0.000018
ORF1ab/nsp5A-B	33	D33E	gaT	gaG	1	3	B.1	0.000009
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	3	3	B.1.1.25	0.001706
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	3	3	B.1.1.58	0.016129
ORF1ab/nsp5A-B	33	D33del	GAT	---	3	3	B.1.177	0.00004
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	3	3	B.1.221	0.000213
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	3	3	B.1.36.29	0.001552
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	3	3	B.1.466.2	0.001174
ORF1ab/nsp5A-B	33	D33V	gAt	gTt	3	3	B.1.582	0.001472
ORF1ab/nsp5A-B	33	D33E	gaT	gaA	3	3	B.1.617.2	0.000011
ORF1ab/nsp5A-B	33	D33P	GAT	CCA	1	2	All	0
ORF1ab/nsp5A-B	33	D33P	GAt	CCt	1	2	All	0
ORF1ab/nsp5A-B	33	D33T	GAT	ACA	1	2	All	0
ORF1ab/nsp5A-B	33	D33T	GAt	ACt	1	2	All	0
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	AY.102	0.000053
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	AY.118	0.000125
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	2	2	AY.119	0.000071
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	AY.121	0.000271
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	AY.25	0.000012
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	AY.29	0.000032
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	2	2	AY.3	0.00002
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	AY.36	0.000296
ORF1ab/nsp5A-B	33	D33del	GAT	---	2	2	AY.43	0.000009
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	2	2	AY.44	0.000012
ORF1ab/nsp5A-B	33	D33del	GAT	---	2	2	AY.46.2	0.001271
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	AY.47	0.000062
ORF1ab/nsp5A-B	33	D33del	GAT	---	2	2	AY.5	0.000041
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	AY.5	0.000041
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	AY.54	0.000191
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	AY.6	0.000082
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	AY.61	0.00021
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	AY.75	0.000112
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	AY.9	0.000135
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	2	2	B.1.1	0.000036
ORF1ab/nsp5A-B	33	D33E	gaT	gaG	2	2	B.1.1.269	0.002706
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	B.1.1.306	0.000877
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	2	2	B.1.1.37	0.000386
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	2	2	B.1.1.404	0.031746
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	B.1.1.519	0.000079
ORF1ab/nsp5A-B	33	D33P	GAT	CCA	1	2	B.1.1.7	0.000001
ORF1ab/nsp5A-B	33	D33P	GAt	CCt	1	2	B.1.1.7	0.000001
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	2	2	B.1.160	0.000062
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	B.1.160	0.000062
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	B.1.177	0.000026
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	B.1.177.60	0.000437
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	2	2	B.1.177.77	0.001452
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	B.1.351	0.000059
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	B.1.36	0.000292
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	B.1.369	0.00057
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	2	2	B.1.427	0.000101
ORF1ab/nsp5A-B	33	D33E	gaT	gaA	2	2	B.1.586	0.021978
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	B.1.617.1	0.000258
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	2	2	B.1.617.2	0.000008
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	2	2	B.1.617.2	0.000008
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	2	2	B.1.8	0.003945
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	P.1	0.000032
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	2	2	P.1.14	0.000096
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	2	2	P.2	0.000373
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	AE.8	0.000489
ORF1ab/nsp5A-B	33	D33del2	gAT	g--	1	1	All	0
ORF1ab/nsp5A-B	33	D33Q	GaT	CaA	1	1	All	0
ORF1ab/nsp5A-B	33	D33C	GAt	TGt	1	1	All	0
ORF1ab/nsp5A-B	33	D33F	GAt	TTt	1	1	All	0
ORF1ab/nsp5A-B	33	D33K	GaT	AaA	1	1	All	0
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	1	1	AY.103	0.000006
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	AY.108	0.001103
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.108	0.001103
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.11	0.001339
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	1	1	AY.110	0.000113
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	AY.113	0.000142
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.113	0.000142
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	AY.116	0.000287
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	AY.116.1	0.000311
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.117	0.000085
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.119	0.000035
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	AY.119	0.000035
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	AY.13	0.000161
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.16.1	0.00047
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	AY.20	0.000039
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.24	0.000431
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	AY.25	0.000006
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	AY.26	0.000028
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.26	0.000028
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	AY.26	0.000028
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	AY.27	0.000065
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	AY.3	0.00001
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.30	0.000396
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	AY.39	0.000025
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	AY.4	0.000002
ORF1ab/nsp5A-B	33	D33V	gAt	gTt	1	1	AY.4.5	0.000107
ORF1ab/nsp5A-B	33	D33E	gaT	gaA	1	1	AY.42	0.00004
ORF1ab/nsp5A-B	33	D33T	GAT	ACA	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	33	D33del1	Gat	-at	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	33	D33E	gaT	gaA	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	AY.43	0.000004
ORF1ab/nsp5A-B	33	D33del1	gaT	ga-	1	1	AY.44	0.000006
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	AY.45	0.000122
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	AY.45	0.000122
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.46.6	0.000072
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.47	0.000031
ORF1ab/nsp5A-B	33	D33C	GAt	TGt	1	1	AY.48	0.000465
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	AY.5	0.000021
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	AY.5	0.000021
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	AY.54	0.000095
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.6	0.000041
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	AY.74	0.000116
ORF1ab/nsp5A-B	33	D33E	gaT	gaG	1	1	AY.80	0.001129
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	1	1	AY.9.2	0.000037
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.9.2	0.000037
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	AY.93	0.000273
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	1	1	AY.98.1	0.000048
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	AY.99.1	0.001553
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	AY.99.2	0.000092
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	B.1	0.000009
ORF1ab/nsp5A-B	33	D33K	GaT	AaA	1	1	B.1	0.000009
ORF1ab/nsp5A-B	33	D33V	gAt	gTt	1	1	B.1	0.000009
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	1	1	B.1	0.000009
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.1	0.000018
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.1.159	0.004673
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	1	1	B.1.1.176	0.000439
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	B.1.1.198	0.001468
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	B.1.1.214	0.000055
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.1.214	0.000055
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.1.222	0.000204
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.1.231	0.003096
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.1.318	0.000302
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.1.329	0.003846
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	B.1.1.336	0.016667
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.1.372	0.000689
ORF1ab/nsp5A-B	33	D33del1	gaT	ga-	1	1	B.1.1.39	0.00051
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.1.435	0.034483
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	1	1	B.1.1.519	0.00004
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.1.63	0.000386
ORF1ab/nsp5A-B	33	D33F	GAt	TTt	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	33	D33Q	GaT	CaA	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	33	D33H	Gat	Cat	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	33	D33V	gAt	gTt	1	1	B.1.1.7	0.000001
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.146	0.004237
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.161	0.017241
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.177	0.000013
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.177.10	0.000878
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.177.12	0.000152
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.177.16	0.000664
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.177.21	0.000076
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	B.1.177.32	0.00135
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.177.62	0.001192
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.177.81	0.000189
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.179	0.003759
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.2	0.000009
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.22	0.001318
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.23	0.006061
ORF1ab/nsp5A-B	33	D33H	Gat	Cat	1	1	B.1.232	0.000537
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	B.1.235	0.002519
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	B.1.243	0.00007
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.258	0.000067
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.258	0.000067
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	B.1.258	0.000067
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.258.3	0.001675
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	B.1.291	0.019231
ORF1ab/nsp5A-B	33	D33E	gaT	gaG	1	1	B.1.305	0.002151
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.36	0.000146
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.36.1	0.00114
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.36.23	0.016393
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.36.36	0.000602
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.36.8	0.001
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	1	1	B.1.398	0.002976
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.400	0.000429
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.420	0.010417
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.422	0.000812
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	B.1.427	0.00005
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	B.1.429	0.000024
ORF1ab/nsp5A-B	33	D33E	gaT	gaG	1	1	B.1.443	0.004673
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.456	0.003268
ORF1ab/nsp5A-B	33	D33H	Gat	Cat	1	1	B.1.466.2	0.000391
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.468	0.005714
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	B.1.468	0.005714
ORF1ab/nsp5A-B	33	D33V	gAt	gTt	1	1	B.1.479	0.038462
ORF1ab/nsp5A-B	33	D33E	gaT	gaA	1	1	B.1.524	0.001406
ORF1ab/nsp5A-B	33	D33G	gAt	gGt	1	1	B.1.526	0.000024
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.564	0.000426
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	B.1.595	0.000261
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.1.596	0.000087
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	33	D33del2	gAT	g--	1	1	B.1.617.2	0.000004
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	B.1.621	0.000089
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.3	0.000831
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.31	0.003731
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	B.40	0.000364
ORF1ab/nsp5A-B	33	D33T	GAt	ACt	1	1	C.35	0.000774
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	D.2	0.000075
ORF1ab/nsp5A-B	33	D33del	GAT	---	1	1	N.4	0.004255
ORF1ab/nsp5A-B	33	D33A	gAt	gCt	1	1	P.1	0.000016
ORF1ab/nsp5A-B	33	D33N	Gat	Aat	1	1	P.1	0.000016
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	P.1.14	0.000048
ORF1ab/nsp5A-B	33	D33Y	Gat	Tat	1	1	P.1.17	0.000162
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	Q.1	0.000126
ORF1ab/nsp5A-B	33	D33D	gaT	gaC	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.