CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 32

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B32L32LL3295LsynctTctC5425130.94649410148-10150
ORF1ab/nsp5A-B32L32LL3295LsynctTctA542190.035055410148-10150
ORF1ab/nsp5A-B32L32LL3295LsynctTctG54290.016605210148-10150
ORF1ab/nsp5A-B32L32LL3295LsynCtTTtA54210.0018450210148-10150
ORF1ab/nsp5A-B32L32IL3295InonsynCttAtt1051040.99047610148-10150
ORF1ab/nsp5A-B32L32IL3295InonsynCtTAtA10510.0095238110148-10150
ORF1ab/nsp5A-B32L32FL3295FnonsynCttTtt5454110148-10150
ORF1ab/nsp5A-B32L32delL3295deldelCTT---4242110148-10150
ORF1ab/nsp5A-B32L32VL3295VnonsynCttGtt870.87510148-10150
ORF1ab/nsp5A-B32L32VL3295VnonsynCtTGtA810.12510148-10150
ORF1ab/nsp5A-B32L32PL3295PnonsyncTtcCt760.85714310148-10150
ORF1ab/nsp5A-B32L32PL3295PnonsyncTTcCC710.14285710148-10150
ORF1ab/nsp5A-B32L32HL3295HnonsyncTtcAt22110148-10150
ORF1ab/nsp5A-B32L32QL3295QnonsyncTTcAA22110148-10150
ORF1ab/nsp5A-B32L32NL3295NnonsynCTtAAt11110148-10150
ORF1ab/nsp5A-B32L32EL3295EnonsynCTTGAA11110148-10150
ORF1ab/nsp5A-B32L32DL3295DnonsynCTtGAt11110148-10150
ORF1ab/nsp5A-B32L32RL3295RnonsyncTtcGt11110148-10150
ORF1ab/nsp5A-B32L32KL3295KnonsynCTTAAA11110148-10150
ORF1ab/nsp5A-B32L32del2L3295del2delcTTc--11110148-10150
ORF1ab/nsp5A-B32L32YL3295YnonsynCTtTAt11110148-10150
ORF1ab/nsp5A-B32L32del1L3295del1delcTTc-C11110148-10150

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B32L32LctTctC513542All0.000098
ORF1ab/nsp5A-B32L32LctTctA19542All0.000004
ORF1ab/nsp5A-B32L32LctTctG9542All0.000002
ORF1ab/nsp5A-B32L32LCtTTtA1542All0
ORF1ab/nsp5A-B32L32LctTctC147147B.1.1.2940.186076
ORF1ab/nsp5A-B32L32LctTctC142142B.1.20.00125
ORF1ab/nsp5A-B32L32ICttAtt104105All0.00002
ORF1ab/nsp5A-B32L32ICtTAtA1105All0
ORF1ab/nsp5A-B32L32FCttTtt5454All0.00001
ORF1ab/nsp5A-B32L32LctTctC4343M.11
ORF1ab/nsp5A-B32L32delCTT---4242All0.000008
ORF1ab/nsp5A-B32L32ICttAtt3939AY.40.000061
ORF1ab/nsp5A-B32L32ICttAtt2727AY.440.000164
ORF1ab/nsp5A-B32L32LctTctC1526B.1.1.70.000013
ORF1ab/nsp5A-B32L32LctTctA1026B.1.1.70.000009
ORF1ab/nsp5A-B32L32LctTctG126B.1.1.70.000001
ORF1ab/nsp5A-B32L32LctTctC2020AY.420.000805
ORF1ab/nsp5A-B32L32LctTctC1818B.1.5960.001568
ORF1ab/nsp5A-B32L32LctTctC1818B.1.617.20.000068
ORF1ab/nsp5A-B32L32LctTctC1616AY.1030.000099
ORF1ab/nsp5A-B32L32LctTctC1416AY.40.000022
ORF1ab/nsp5A-B32L32LctTctA116AY.40.000002
ORF1ab/nsp5A-B32L32LCtTTtA116AY.40.000002
ORF1ab/nsp5A-B32L32ICttAtt1616B.1.1.70.000014
ORF1ab/nsp5A-B32L32delCTT---1616B.1.1.70.000014
ORF1ab/nsp5A-B32L32LctTctC1214B.10.00011
ORF1ab/nsp5A-B32L32LctTctA114B.10.000009
ORF1ab/nsp5A-B32L32LctTctG114B.10.000009
ORF1ab/nsp5A-B32L32FCttTtt1010B.1.1.70.000009
ORF1ab/nsp5A-B32L32VCttGtt78All0.000001
ORF1ab/nsp5A-B32L32VCtTGtA18All0
ORF1ab/nsp5A-B32L32LctTctC88AY.1190.000282
ORF1ab/nsp5A-B32L32PcTtcCt67All0.000001
ORF1ab/nsp5A-B32L32PcTTcCC17All0
ORF1ab/nsp5A-B32L32LctTctC77AY.250.000042
ORF1ab/nsp5A-B32L32LctTctG47AY.30.00004
ORF1ab/nsp5A-B32L32LctTctC37AY.30.00003
ORF1ab/nsp5A-B32L32LctTctC77B.1.10.000127
ORF1ab/nsp5A-B32L32LctTctC66AY.1200.000223
ORF1ab/nsp5A-B32L32FCttTtt55B.10.000046
ORF1ab/nsp5A-B32L32LctTctC34AY.430.000013
ORF1ab/nsp5A-B32L32LctTctG14AY.430.000004
ORF1ab/nsp5A-B32L32LctTctC44AY.98.10.000194
ORF1ab/nsp5A-B32L32FCttTtt44B.1.10.000073
ORF1ab/nsp5A-B32L32LctTctC33AY.200.000117
ORF1ab/nsp5A-B32L32LctTctC33AY.330.0002
ORF1ab/nsp5A-B32L32delCTT---33AY.4.50.000322
ORF1ab/nsp5A-B32L32LctTctC33AY.610.000314
ORF1ab/nsp5A-B32L32FCttTtt33AY.90.000203
ORF1ab/nsp5A-B32L32ICttAtt23B.10.000018
ORF1ab/nsp5A-B32L32VCttGtt23B.10.000018
ORF1ab/nsp5A-B32L32ICtTAtA13B.10.000009
ORF1ab/nsp5A-B32L32VCtTGtA13B.10.000009
ORF1ab/nsp5A-B32L32ICttAtt33B.1.10.000054
ORF1ab/nsp5A-B32L32FCttTtt33B.1.258.110.001189
ORF1ab/nsp5A-B32L32LctTctA33B.1.6270.006061
ORF1ab/nsp5A-B32L32FCttTtt33D.20.000225
ORF1ab/nsp5A-B32L32HcTtcAt22All0
ORF1ab/nsp5A-B32L32QcTTcAA22All0
ORF1ab/nsp5A-B32L32LctTctC22AY.10.000791
ORF1ab/nsp5A-B32L32ICttAtt22AY.30.00002
ORF1ab/nsp5A-B32L32ICttAtt22AY.360.000296
ORF1ab/nsp5A-B32L32FCttTtt22AY.390.000049
ORF1ab/nsp5A-B32L32ICttAtt22AY.430.000009
ORF1ab/nsp5A-B32L32LctTctC22AY.440.000012
ORF1ab/nsp5A-B32L32delCTT---22AY.46.20.001271
ORF1ab/nsp5A-B32L32delCTT---22AY.50.000041
ORF1ab/nsp5A-B32L32LctTctC22AY.730.001331
ORF1ab/nsp5A-B32L32delCTT---22B.1.1770.000026
ORF1ab/nsp5A-B32L32FCttTtt22B.1.177.450.000762
ORF1ab/nsp5A-B32L32FCttTtt22B.1.20.000018
ORF1ab/nsp5A-B32L32ICttAtt22B.1.5960.000174
ORF1ab/nsp5A-B32L32LctTctC11A.10.000282
ORF1ab/nsp5A-B32L32RcTtcGt11All0
ORF1ab/nsp5A-B32L32YCTtTAt11All0
ORF1ab/nsp5A-B32L32ECTTGAA11All0
ORF1ab/nsp5A-B32L32DCTtGAt11All0
ORF1ab/nsp5A-B32L32del2cTTc--11All0
ORF1ab/nsp5A-B32L32KCTTAAA11All0
ORF1ab/nsp5A-B32L32del1cTTc-C11All0
ORF1ab/nsp5A-B32L32NCTtAAt11All0
ORF1ab/nsp5A-B32L32FCttTtt11AY.10.000396
ORF1ab/nsp5A-B32L32LctTctC11AY.1020.000027
ORF1ab/nsp5A-B32L32ICttAtt11AY.1030.000006
ORF1ab/nsp5A-B32L32VCttGtt11AY.1030.000006
ORF1ab/nsp5A-B32L32del1cTTc-C11AY.1030.000006
ORF1ab/nsp5A-B32L32FCttTtt11AY.1030.000006
ORF1ab/nsp5A-B32L32LctTctC11AY.1050.000643
ORF1ab/nsp5A-B32L32FCttTtt11AY.1200.000037
ORF1ab/nsp5A-B32L32ICttAtt11AY.250.000006
ORF1ab/nsp5A-B32L32delCTT---11AY.250.000006
ORF1ab/nsp5A-B32L32FCttTtt11AY.260.000028
ORF1ab/nsp5A-B32L32FCttTtt11AY.30.00001
ORF1ab/nsp5A-B32L32VCttGtt11AY.40.000002
ORF1ab/nsp5A-B32L32FCttTtt11AY.40.000002
ORF1ab/nsp5A-B32L32delCTT---11AY.40.000002
ORF1ab/nsp5A-B32L32LctTctA11AY.4.50.000107
ORF1ab/nsp5A-B32L32LctTctA11AY.400.000964
ORF1ab/nsp5A-B32L32delCTT---11AY.430.000004
ORF1ab/nsp5A-B32L32FCttTtt11AY.430.000004
ORF1ab/nsp5A-B32L32ICttAtt11AY.470.000031
ORF1ab/nsp5A-B32L32YCTtTAt11AY.480.000465
ORF1ab/nsp5A-B32L32LctTctC11AY.50.000021
ORF1ab/nsp5A-B32L32LctTctC11AY.90.000068
ORF1ab/nsp5A-B32L32delCTT---11AY.99.10.001553
ORF1ab/nsp5A-B32L32LctTctC11B0.000128
ORF1ab/nsp5A-B32L32FCttTtt11B0.000128
ORF1ab/nsp5A-B32L32NCTtAAt11B.10.000009
ORF1ab/nsp5A-B32L32del2cTTc--11B.10.000009
ORF1ab/nsp5A-B32L32QcTTcAA11B.10.000009
ORF1ab/nsp5A-B32L32HcTtcAt11B.10.000009
ORF1ab/nsp5A-B32L32DCTtGAt11B.10.000009
ORF1ab/nsp5A-B32L32KCTTAAA11B.10.000009
ORF1ab/nsp5A-B32L32ECTTGAA11B.10.000009
ORF1ab/nsp5A-B32L32LctTctC11B.1.1.10.000327
ORF1ab/nsp5A-B32L32delCTT---11B.1.1.1590.004673
ORF1ab/nsp5A-B32L32RcTtcGt11B.1.1.1940.00495
ORF1ab/nsp5A-B32L32ICttAtt11B.1.1.1940.00495
ORF1ab/nsp5A-B32L32LctTctC11B.1.1.2220.000204
ORF1ab/nsp5A-B32L32FCttTtt11B.1.1.2880.001916
ORF1ab/nsp5A-B32L32PcTtcCt11B.1.1.70.000001
ORF1ab/nsp5A-B32L32VCttGtt11B.1.1.70.000001
ORF1ab/nsp5A-B32L32HcTtcAt11B.1.1.70.000001
ORF1ab/nsp5A-B32L32QcTTcAA11B.1.1.70.000001
ORF1ab/nsp5A-B32L32LctTctG11B.1.1280.000635
ORF1ab/nsp5A-B32L32delCTT---11B.1.1610.017241
ORF1ab/nsp5A-B32L32delCTT---11B.1.177.100.000878
ORF1ab/nsp5A-B32L32delCTT---11B.1.177.160.000664
ORF1ab/nsp5A-B32L32delCTT---11B.1.177.180.00116
ORF1ab/nsp5A-B32L32delCTT---11B.1.177.40.000211
ORF1ab/nsp5A-B32L32delCTT---11B.1.177.690.001484
ORF1ab/nsp5A-B32L32delCTT---11B.1.177.810.000189
ORF1ab/nsp5A-B32L32delCTT---11B.1.1790.003759
ORF1ab/nsp5A-B32L32delCTT---11B.1.20.000009
ORF1ab/nsp5A-B32L32LctTctC11B.1.2030.0625
ORF1ab/nsp5A-B32L32ICttAtt11B.1.2210.000071
ORF1ab/nsp5A-B32L32FCttTtt11B.1.2210.000071
ORF1ab/nsp5A-B32L32FCttTtt11B.1.221.30.000833
ORF1ab/nsp5A-B32L32FCttTtt11B.1.2340.000132
ORF1ab/nsp5A-B32L32delCTT---11B.1.258.30.001675
ORF1ab/nsp5A-B32L32FCttTtt11B.1.36.290.000517
ORF1ab/nsp5A-B32L32LctTctA11B.1.4130.004255
ORF1ab/nsp5A-B32L32LctTctC11B.1.4260.001009
ORF1ab/nsp5A-B32L32LctTctC11B.1.4270.00005
ORF1ab/nsp5A-B32L32LctTctC11B.1.466.20.000391
ORF1ab/nsp5A-B32L32PcTtcCt11B.1.5260.000024
ORF1ab/nsp5A-B32L32FCttTtt11B.1.5640.000426
ORF1ab/nsp5A-B32L32FCttTtt11B.1.575.10.002439
ORF1ab/nsp5A-B32L32PcTtcCt11B.1.5760.000907
ORF1ab/nsp5A-B32L32VCttGtt11B.1.5820.000491
ORF1ab/nsp5A-B32L32FCttTtt11B.1.5950.000261
ORF1ab/nsp5A-B32L32ICttAtt11B.1.5950.000261
ORF1ab/nsp5A-B32L32FCttTtt11B.1.5960.000087
ORF1ab/nsp5A-B32L32PcTtcCt11B.1.5960.000087
ORF1ab/nsp5A-B32L32PcTTcCC11B.1.617.20.000004
ORF1ab/nsp5A-B32L32VCttGtt11B.1.617.20.000004
ORF1ab/nsp5A-B32L32delCTT---11B.1.6210.000089
ORF1ab/nsp5A-B32L32FCttTtt11B.1.6280.000352
ORF1ab/nsp5A-B32L32LctTctC11B.380.02381
ORF1ab/nsp5A-B32L32PcTtcCt11C.350.000774
ORF1ab/nsp5A-B32L32ICttAtt11C.36.30.000567
ORF1ab/nsp5A-B32L32FCttTtt11C.36.3.10.002717
ORF1ab/nsp5A-B32L32ICttAtt11C.370.000116
ORF1ab/nsp5A-B32L32LctTctC11D.20.000075
ORF1ab/nsp5A-B32L32PcTtcCt11D.20.000075
ORF1ab/nsp5A-B32L32delCTT---11N.40.004255
ORF1ab/nsp5A-B32L32LctTctG11P.10.000016
ORF1ab/nsp5A-B32L32FCttTtt11P.10.000016
ORF1ab/nsp5A-B32L32ICttAtt11P.1.10.000318
ORF1ab/nsp5A-B32L32LctTctC11P.1.150.000232
ORF1ab/nsp5A-B32L32LctTctA11R.10.00009