CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 32 | L32L | L3295L | syn | ctT | ctC | 542 | 513 | 0.946494 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32L | L3295L | syn | ctT | ctA | 542 | 19 | 0.0350554 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32L | L3295L | syn | ctT | ctG | 542 | 9 | 0.0166052 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32L | L3295L | syn | CtT | TtA | 542 | 1 | 0.00184502 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32I | L3295I | nonsyn | Ctt | Att | 105 | 104 | 0.990476 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32I | L3295I | nonsyn | CtT | AtA | 105 | 1 | 0.00952381 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32F | L3295F | nonsyn | Ctt | Ttt | 54 | 54 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32del | L3295del | del | CTT | --- | 42 | 42 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32V | L3295V | nonsyn | Ctt | Gtt | 8 | 7 | 0.875 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32V | L3295V | nonsyn | CtT | GtA | 8 | 1 | 0.125 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32P | L3295P | nonsyn | cTt | cCt | 7 | 6 | 0.857143 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32P | L3295P | nonsyn | cTT | cCC | 7 | 1 | 0.142857 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32H | L3295H | nonsyn | cTt | cAt | 2 | 2 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32Q | L3295Q | nonsyn | cTT | cAA | 2 | 2 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32N | L3295N | nonsyn | CTt | AAt | 1 | 1 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32E | L3295E | nonsyn | CTT | GAA | 1 | 1 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32D | L3295D | nonsyn | CTt | GAt | 1 | 1 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32R | L3295R | nonsyn | cTt | cGt | 1 | 1 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32K | L3295K | nonsyn | CTT | AAA | 1 | 1 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32del2 | L3295del2 | del | cTT | c-- | 1 | 1 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32Y | L3295Y | nonsyn | CTt | TAt | 1 | 1 | 1 | 10148-10150 |
ORF1ab/nsp5A-B | 32 | L32del1 | L3295del1 | del | cTT | c-C | 1 | 1 | 1 | 10148-10150 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 513 | 542 | All | 0.000098 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctA | 19 | 542 | All | 0.000004 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctG | 9 | 542 | All | 0.000002 |
ORF1ab/nsp5A-B | 32 | L32L | CtT | TtA | 1 | 542 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 147 | 147 | B.1.1.294 | 0.186076 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 142 | 142 | B.1.2 | 0.00125 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 104 | 105 | All | 0.00002 |
ORF1ab/nsp5A-B | 32 | L32I | CtT | AtA | 1 | 105 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 54 | 54 | All | 0.00001 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 43 | 43 | M.1 | 1 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 42 | 42 | All | 0.000008 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 39 | 39 | AY.4 | 0.000061 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 27 | 27 | AY.44 | 0.000164 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 15 | 26 | B.1.1.7 | 0.000013 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctA | 10 | 26 | B.1.1.7 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctG | 1 | 26 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 20 | 20 | AY.42 | 0.000805 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 18 | 18 | B.1.596 | 0.001568 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 14 | 16 | AY.4 | 0.000022 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctA | 1 | 16 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 32 | L32L | CtT | TtA | 1 | 16 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 12 | 14 | B.1 | 0.00011 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctA | 1 | 14 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctG | 1 | 14 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32V | Ctt | Gtt | 7 | 8 | All | 0.000001 |
ORF1ab/nsp5A-B | 32 | L32V | CtT | GtA | 1 | 8 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp5A-B | 32 | L32P | cTt | cCt | 6 | 7 | All | 0.000001 |
ORF1ab/nsp5A-B | 32 | L32P | cTT | cCC | 1 | 7 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctG | 4 | 7 | AY.3 | 0.00004 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 3 | 7 | AY.3 | 0.00003 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctG | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 32 | L32V | Ctt | Gtt | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 32 | L32I | CtT | AtA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32V | CtT | GtA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 3 | 3 | B.1.258.11 | 0.001189 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctA | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp5A-B | 32 | L32H | cTt | cAt | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32Q | cTT | cAA | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp5A-B | 32 | L32R | cTt | cGt | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32Y | CTt | TAt | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32E | CTT | GAA | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32D | CTt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32del2 | cTT | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32K | CTT | AAA | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32del1 | cTT | c-C | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32N | CTt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 32 | L32V | Ctt | Gtt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 32 | L32del1 | cTT | c-C | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 32 | L32V | Ctt | Gtt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctA | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctA | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 32 | L32Y | CTt | TAt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 32 | L32N | CTt | AAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32del2 | cTT | c-- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32Q | cTT | cAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32H | cTt | cAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32D | CTt | GAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32K | CTT | AAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32E | CTT | GAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 32 | L32R | cTt | cGt | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp5A-B | 32 | L32P | cTt | cCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 32 | L32V | Ctt | Gtt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 32 | L32H | cTt | cAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 32 | L32Q | cTT | cAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctG | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | B.1.203 | 0.0625 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctA | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 32 | L32P | cTt | cCt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp5A-B | 32 | L32P | cTt | cCt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp5A-B | 32 | L32V | Ctt | Gtt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 32 | L32P | cTt | cCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 32 | L32P | cTT | cCC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 32 | L32V | Ctt | Gtt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp5A-B | 32 | L32P | cTt | cCt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 32 | L32P | cTt | cCt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 32 | L32del | CTT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 32 | L32F | Ctt | Ttt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 32 | L32I | Ctt | Att | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp5A-B | 32 | L32L | ctT | ctA | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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