CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 305 | F305F | F3568F | syn | ttC | ttT | 7876 | 7876 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305S | F3568S | nonsyn | tTc | tCc | 122 | 122 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305L | F3568L | nonsyn | Ttc | Ctc | 76 | 54 | 0.710526 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305L | F3568L | nonsyn | ttC | ttA | 76 | 19 | 0.25 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305L | F3568L | nonsyn | ttC | ttG | 76 | 3 | 0.0394737 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305del | F3568del | del | TTC | --- | 49 | 49 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305I | F3568I | nonsyn | Ttc | Atc | 24 | 24 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305V | F3568V | nonsyn | Ttc | Gtc | 16 | 16 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305C | F3568C | nonsyn | tTc | tGc | 5 | 5 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305del1 | F3568del1 | del | ttC | tt- | 4 | 2 | 0.5 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305del1 | F3568del1 | del | Ttc | -tc | 4 | 1 | 0.25 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305del1 | F3568del1 | del | tTC | tC- | 4 | 1 | 0.25 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305Y | F3568Y | nonsyn | tTc | tAc | 2 | 2 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305N | F3568N | nonsyn | TTc | AAc | 1 | 1 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305del2 | F3568del2 | del | tTC | t-- | 1 | 1 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305G | F3568G | nonsyn | TTC | GGT | 1 | 1 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305A | F3568A | nonsyn | TTc | GCc | 1 | 1 | 1 | 10967-10969 |
ORF1ab/nsp5A-B | 305 | F305D | F3568D | nonsyn | TTc | GAc | 1 | 1 | 1 | 10967-10969 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 7876 | 7876 | All | 0.001506 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3077 | 3077 | B.1.1.7 | 0.002755 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 502 | 502 | B.1.617.2 | 0.00189 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 498 | 498 | AZ.3 | 0.756839 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 488 | 488 | AY.4 | 0.00076 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 376 | 376 | AY.44 | 0.002289 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 211 | 211 | B.1.2 | 0.001858 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 163 | 163 | AY.43 | 0.000722 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 140 | 140 | AY.103 | 0.000869 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 123 | 123 | B.1.221 | 0.008737 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 122 | 122 | All | 0.000023 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 112 | 112 | P.1 | 0.001764 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 104 | 104 | B.1.427 | 0.005252 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 84 | 84 | AY.23.1 | 0.035058 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 84 | 84 | AY.4 | 0.000131 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 83 | 83 | AY.25 | 0.000499 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 78 | 78 | B.1.177.30 | 0.19598 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 54 | 76 | All | 0.00001 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 19 | 76 | All | 0.000004 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttG | 3 | 76 | All | 0.000001 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 73 | 73 | B.1 | 0.000669 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 70 | 70 | AY.20 | 0.002721 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 63 | 63 | AY.3 | 0.000627 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 54 | 54 | B.1.177 | 0.000711 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 51 | 51 | AY.102 | 0.001352 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 49 | 49 | All | 0.000009 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 43 | 43 | B.1.429 | 0.001012 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 43 | 43 | B.1.526 | 0.001011 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 42 | 42 | B.1.1 | 0.000762 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 41 | 41 | AY.120 | 0.001524 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 32 | 40 | AY.4 | 0.00005 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 7 | 40 | AY.4 | 0.000011 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttG | 1 | 40 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 36 | 36 | AY.100 | 0.001656 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 35 | 35 | AY.5 | 0.000723 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 35 | 35 | AY.62 | 0.015251 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 33 | 33 | B.1.1.37 | 0.006365 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 33 | 33 | B.1.1.519 | 0.00131 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 31 | 31 | B.1.596 | 0.002701 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 31 | 31 | B.1.621 | 0.002744 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 30 | 30 | AY.39 | 0.000741 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 30 | 30 | AY.47 | 0.000933 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 27 | 27 | B.1.160.16 | 0.025093 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 26 | 26 | AY.39.1 | 0.00103 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 26 | 26 | B.1.234 | 0.003431 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 25 | 25 | AY.117 | 0.002113 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 25 | 25 | B.1.177.54 | 0.015161 |
ORF1ab/nsp5A-B | 305 | F305I | Ttc | Atc | 24 | 24 | All | 0.000005 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 24 | 24 | AY.42 | 0.000966 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 24 | 24 | B.1.351 | 0.000713 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 24 | 24 | B.1.375 | 0.019672 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 23 | 23 | AY.4.2 | 0.000499 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 22 | 22 | B.1.1.297 | 0.049217 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 21 | 21 | B.1.160 | 0.000655 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 21 | 21 | P.2 | 0.003919 |
ORF1ab/nsp5A-B | 305 | F305I | Ttc | Atc | 19 | 19 | AY.14 | 0.001672 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 19 | 19 | B.1.1.434 | 0.006623 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 18 | 18 | B.1.396 | 0.012703 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 18 | 18 | C.36.3 | 0.01021 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 17 | 17 | B.1.1.28 | 0.005291 |
ORF1ab/nsp5A-B | 305 | F305V | Ttc | Gtc | 16 | 16 | All | 0.000003 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 16 | 16 | AS.2 | 0.25 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 15 | 15 | AY.121 | 0.00203 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 15 | 15 | AY.67 | 0.006964 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 14 | 14 | AY.9.2 | 0.000514 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 14 | 14 | B.1.416.1 | 0.021875 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 13 | 13 | AY.3.1 | 0.001108 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 13 | 13 | B.1.177.60 | 0.00284 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 13 | 13 | B.1.637 | 0.00095 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp5A-B | 305 | F305V | Ttc | Gtc | 11 | 11 | AY.109 | 0.008136 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 11 | 11 | AY.36 | 0.00163 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 11 | 11 | AY.99.2 | 0.001014 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 9 | 9 | AY.14 | 0.000792 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 8 | 8 | B.1.1.254 | 0.089888 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 7 | 7 | AY.13 | 0.001127 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 7 | 7 | AY.35 | 0.001631 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 7 | 7 | Q.4 | 0.003183 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 6 | 6 | B.1.361 | 0.007732 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp5A-B | 305 | F305C | tTc | tGc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 5 | 5 | B.1.577 | 0.003436 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp5A-B | 305 | F305del1 | ttC | tt- | 2 | 4 | All | 0 |
ORF1ab/nsp5A-B | 305 | F305del1 | tTC | tC- | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 305 | F305del1 | Ttc | -tc | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | AZ.2 | 0.003284 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | B.1.1.280 | 0.012346 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | B.1.1.420 | 0.004024 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | B.1.582 | 0.001963 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 4 | 4 | Q.2 | 0.002454 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.1.525 | 0.016393 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.1.54 | 0.009063 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttG | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.177.43 | 0.004431 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.177.8 | 0.002257 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.416 | 0.003807 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.474 | 0.005703 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp5A-B | 305 | F305Y | tTc | tAc | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp5A-B | 305 | F305V | Ttc | Gtc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 305 | F305Y | tTc | tAc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.1.111 | 0.029412 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.177.20 | 0.003035 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.504 | 0.0625 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.507 | 0.022472 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.539 | 0.035088 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.540 | 0.019417 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp5A-B | 305 | F305I | Ttc | Atc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp5A-B | 305 | F305A | TTc | GCc | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 305 | F305del2 | tTC | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 305 | F305G | TTC | GGT | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 305 | F305N | TTc | AAc | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 305 | F305D | TTc | GAc | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp5A-B | 305 | F305V | Ttc | Gtc | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp5A-B | 305 | F305del1 | Ttc | -tc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp5A-B | 305 | F305del1 | ttC | tt- | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 305 | F305I | Ttc | Atc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 305 | F305A | TTc | GCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp5A-B | 305 | F305I | Ttc | Atc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 305 | F305D | TTc | GAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 305 | F305I | Ttc | Atc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 305 | F305del2 | tTC | t-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 305 | F305del1 | tTC | tC- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 305 | F305V | Ttc | Gtc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 305 | F305N | TTc | AAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.453 | 0.008475 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 305 | F305S | tTc | tCc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp5A-B | 305 | F305C | tTc | tGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 305 | F305C | tTc | tGc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 305 | F305C | tTc | tGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.35 | 0.008475 |
ORF1ab/nsp5A-B | 305 | F305V | Ttc | Gtc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp5A-B | 305 | F305G | TTC | GGT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp5A-B | 305 | F305C | tTc | tGc | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp5A-B | 305 | F305del1 | ttC | tt- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 305 | F305C | tTc | tGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.1.9.2 | 0.1 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp5A-B | 305 | F305L | Ttc | Ctc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 305 | F305L | ttC | ttA | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp5A-B | 305 | F305F | ttC | ttT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp5A-B | 305 | F305del | TTC | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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