CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 304 | T304T | T3567T | syn | acT | acC | 871 | 807 | 0.926521 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304T | T3567T | syn | acT | acG | 871 | 47 | 0.053961 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304T | T3567T | syn | acT | acA | 871 | 17 | 0.0195178 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304I | T3567I | nonsyn | aCt | aTt | 599 | 597 | 0.996661 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304I | T3567I | nonsyn | aCT | aTC | 599 | 2 | 0.0033389 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304del1 | T3567del1 | del | acT | ac- | 84 | 84 | 1 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304del | T3567del | del | ACT | --- | 49 | 49 | 1 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304N | T3567N | nonsyn | aCt | aAt | 41 | 41 | 1 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304A | T3567A | nonsyn | Act | Gct | 17 | 17 | 1 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304S | T3567S | nonsyn | Act | Tct | 4 | 3 | 0.75 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304S | T3567S | nonsyn | aCt | aGt | 4 | 1 | 0.25 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304P | T3567P | nonsyn | Act | Cct | 3 | 3 | 1 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304G | T3567G | nonsyn | ACT | GGC | 1 | 1 | 1 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304del2 | T3567del2 | del | ACt | --t | 1 | 1 | 1 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304D | T3567D | nonsyn | ACt | GAt | 1 | 1 | 1 | 10964-10966 |
ORF1ab/nsp5A-B | 304 | T304V | T3567V | nonsyn | ACt | GTt | 1 | 1 | 1 | 10964-10966 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 807 | 871 | All | 0.000154 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 47 | 871 | All | 0.000009 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acA | 17 | 871 | All | 0.000003 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 597 | 599 | All | 0.000114 |
ORF1ab/nsp5A-B | 304 | T304I | aCT | aTC | 2 | 599 | All | 0 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 340 | 343 | AY.25 | 0.002045 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acA | 2 | 343 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 1 | 343 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 233 | 233 | R.1 | 0.020972 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 149 | 149 | B.1.1.7 | 0.000133 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 92 | 93 | AY.47 | 0.002862 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acA | 1 | 93 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 84 | 84 | All | 0.000016 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 66 | 66 | B.1.1.7 | 0.000059 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 62 | 62 | AY.4 | 0.000096 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 49 | 49 | All | 0.000009 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 28 | 43 | B.1.1.7 | 0.000025 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 10 | 43 | B.1.1.7 | 0.000009 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acA | 5 | 43 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 304 | T304N | aCt | aAt | 41 | 41 | All | 0.000008 |
ORF1ab/nsp5A-B | 304 | T304N | aCt | aAt | 30 | 30 | B.1.536 | 0.714286 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 23 | 23 | AY.43 | 0.000102 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 21 | 21 | B.1.604 | 0.362069 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 19 | 19 | AY.47 | 0.000591 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 18 | 18 | AY.25 | 0.000108 |
ORF1ab/nsp5A-B | 304 | T304A | Act | Gct | 17 | 17 | All | 0.000003 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 12 | 15 | AY.4 | 0.000019 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acA | 3 | 15 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 9 | 11 | B.1.617.2 | 0.000034 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acA | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 5 | 9 | P.1 | 0.000079 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acA | 3 | 9 | P.1 | 0.000047 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 1 | 9 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 7 | 8 | B.1 | 0.000064 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 1 | 8 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp5A-B | 304 | T304A | Act | Gct | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 6 | 6 | B.1.1.348 | 0.004777 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp5A-B | 304 | T304S | Act | Tct | 3 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 304 | T304S | aCt | aGt | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 3 | 4 | AY.102 | 0.00008 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 1 | 4 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp5A-B | 304 | T304A | Act | Gct | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 4 | 4 | B.1.104 | 0.01476 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 4 | 4 | B.6.6 | 0.003556 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp5A-B | 304 | T304P | Act | Cct | 3 | 3 | All | 0.000001 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 2 | 3 | AY.26 | 0.000057 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 1 | 3 | AY.26 | 0.000028 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 3 | 3 | B.1.265 | 0.003812 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 304 | T304I | aCT | aTC | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp5A-B | 304 | T304N | aCt | aAt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp5A-B | 304 | T304N | aCt | aAt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp5A-B | 304 | T304N | aCt | aAt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp5A-B | 304 | T304A | Act | Gct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp5A-B | 304 | T304N | aCt | aAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 304 | T304P | Act | Cct | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 304 | T304P | Act | Cct | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp5A-B | 304 | T304G | ACT | GGC | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 304 | T304V | ACt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 304 | T304D | ACt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 304 | T304del2 | ACt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AS.1 | 0.009524 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acA | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp5A-B | 304 | T304A | Act | Gct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp5A-B | 304 | T304A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp5A-B | 304 | T304N | aCt | aAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 304 | T304A | Act | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp5A-B | 304 | T304S | Act | Tct | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp5A-B | 304 | T304V | ACt | GTt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 304 | T304S | Act | Tct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 304 | T304del2 | ACt | --t | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp5A-B | 304 | T304N | aCt | aAt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp5A-B | 304 | T304I | aCT | aTC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | B.1.1.331 | 0.011628 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.1.38 | 0.058824 |
ORF1ab/nsp5A-B | 304 | T304P | Act | Cct | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 304 | T304S | aCt | aGt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp5A-B | 304 | T304N | aCt | aAt | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | B.1.258.6 | 0.019608 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp5A-B | 304 | T304A | Act | Gct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp5A-B | 304 | T304G | ACT | GGC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp5A-B | 304 | T304S | Act | Tct | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp5A-B | 304 | T304N | aCt | aAt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 304 | T304D | ACt | GAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acA | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | C.2.1 | 0.006667 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp5A-B | 304 | T304T | acT | acC | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp5A-B | 304 | T304del | ACT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp5A-B | 304 | T304I | aCt | aTt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp5A-B | 304 | T304del1 | acT | ac- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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