CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 304

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B304T304TT3567TsynacTacC8718070.92652110964-10966
ORF1ab/nsp5A-B304T304TT3567TsynacTacG871470.05396110964-10966
ORF1ab/nsp5A-B304T304TT3567TsynacTacA871170.019517810964-10966
ORF1ab/nsp5A-B304T304IT3567InonsynaCtaTt5995970.99666110964-10966
ORF1ab/nsp5A-B304T304IT3567InonsynaCTaTC59920.003338910964-10966
ORF1ab/nsp5A-B304T304del1T3567del1delacTac-8484110964-10966
ORF1ab/nsp5A-B304T304delT3567deldelACT---4949110964-10966
ORF1ab/nsp5A-B304T304NT3567NnonsynaCtaAt4141110964-10966
ORF1ab/nsp5A-B304T304AT3567AnonsynActGct1717110964-10966
ORF1ab/nsp5A-B304T304ST3567SnonsynActTct430.7510964-10966
ORF1ab/nsp5A-B304T304ST3567SnonsynaCtaGt410.2510964-10966
ORF1ab/nsp5A-B304T304PT3567PnonsynActCct33110964-10966
ORF1ab/nsp5A-B304T304GT3567GnonsynACTGGC11110964-10966
ORF1ab/nsp5A-B304T304del2T3567del2delACt--t11110964-10966
ORF1ab/nsp5A-B304T304DT3567DnonsynACtGAt11110964-10966
ORF1ab/nsp5A-B304T304VT3567VnonsynACtGTt11110964-10966

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B304T304TacTacC807871All0.000154
ORF1ab/nsp5A-B304T304TacTacG47871All0.000009
ORF1ab/nsp5A-B304T304TacTacA17871All0.000003
ORF1ab/nsp5A-B304T304IaCtaTt597599All0.000114
ORF1ab/nsp5A-B304T304IaCTaTC2599All0
ORF1ab/nsp5A-B304T304TacTacC340343AY.250.002045
ORF1ab/nsp5A-B304T304TacTacA2343AY.250.000012
ORF1ab/nsp5A-B304T304TacTacG1343AY.250.000006
ORF1ab/nsp5A-B304T304TacTacC233233R.10.020972
ORF1ab/nsp5A-B304T304IaCtaTt149149B.1.1.70.000133
ORF1ab/nsp5A-B304T304TacTacC9293AY.470.002862
ORF1ab/nsp5A-B304T304TacTacA193AY.470.000031
ORF1ab/nsp5A-B304T304del1acTac-8484All0.000016
ORF1ab/nsp5A-B304T304del1acTac-6666B.1.1.70.000059
ORF1ab/nsp5A-B304T304IaCtaTt6262AY.40.000096
ORF1ab/nsp5A-B304T304delACT---4949All0.000009
ORF1ab/nsp5A-B304T304TacTacG2843B.1.1.70.000025
ORF1ab/nsp5A-B304T304TacTacC1043B.1.1.70.000009
ORF1ab/nsp5A-B304T304TacTacA543B.1.1.70.000004
ORF1ab/nsp5A-B304T304NaCtaAt4141All0.000008
ORF1ab/nsp5A-B304T304NaCtaAt3030B.1.5360.714286
ORF1ab/nsp5A-B304T304IaCtaTt2323AY.430.000102
ORF1ab/nsp5A-B304T304IaCtaTt2121B.1.6040.362069
ORF1ab/nsp5A-B304T304IaCtaTt2020B.1.20.000176
ORF1ab/nsp5A-B304T304IaCtaTt1919AY.470.000591
ORF1ab/nsp5A-B304T304IaCtaTt1818AY.250.000108
ORF1ab/nsp5A-B304T304AActGct1717All0.000003
ORF1ab/nsp5A-B304T304IaCtaTt1717B.10.000156
ORF1ab/nsp5A-B304T304TacTacC1215AY.40.000019
ORF1ab/nsp5A-B304T304TacTacA315AY.40.000005
ORF1ab/nsp5A-B304T304IaCtaTt1414AY.440.000085
ORF1ab/nsp5A-B304T304IaCtaTt1414B.1.5260.000329
ORF1ab/nsp5A-B304T304delACT---1313B.1.1.70.000012
ORF1ab/nsp5A-B304T304IaCtaTt1313B.1.617.20.000049
ORF1ab/nsp5A-B304T304TacTacC1111B.1.10.0002
ORF1ab/nsp5A-B304T304TacTacC911B.1.617.20.000034
ORF1ab/nsp5A-B304T304TacTacA111B.1.617.20.000004
ORF1ab/nsp5A-B304T304TacTacG111B.1.617.20.000004
ORF1ab/nsp5A-B304T304IaCtaTt99AY.30.00009
ORF1ab/nsp5A-B304T304IaCtaTt99AY.39.10.000357
ORF1ab/nsp5A-B304T304IaCtaTt99P.10.000142
ORF1ab/nsp5A-B304T304TacTacC59P.10.000079
ORF1ab/nsp5A-B304T304TacTacA39P.10.000047
ORF1ab/nsp5A-B304T304TacTacG19P.10.000016
ORF1ab/nsp5A-B304T304IaCtaTt88AY.1030.00005
ORF1ab/nsp5A-B304T304TacTacC88AY.750.000448
ORF1ab/nsp5A-B304T304TacTacC78B.10.000064
ORF1ab/nsp5A-B304T304TacTacG18B.10.000009
ORF1ab/nsp5A-B304T304IaCtaTt88B.1.3510.000238
ORF1ab/nsp5A-B304T304AActGct77AY.40.000011
ORF1ab/nsp5A-B304T304IaCtaTt77AY.4.20.000152
ORF1ab/nsp5A-B304T304delACT---660.333333
ORF1ab/nsp5A-B304T304delACT---66AY.40.000009
ORF1ab/nsp5A-B304T304TacTacG66B.1.1.3480.004777
ORF1ab/nsp5A-B304T304IaCtaTt66B.1.2430.000418
ORF1ab/nsp5A-B304T304TacTacC55B.1.360.00073
ORF1ab/nsp5A-B304T304IaCtaTt55B.1.4270.000252
ORF1ab/nsp5A-B304T304SActTct34All0.000001
ORF1ab/nsp5A-B304T304SaCtaGt14All0
ORF1ab/nsp5A-B304T304TacTacC34AY.1020.00008
ORF1ab/nsp5A-B304T304TacTacG14AY.1020.000027
ORF1ab/nsp5A-B304T304TacTacC44AY.30.00004
ORF1ab/nsp5A-B304T304IaCtaTt44AY.3.10.000341
ORF1ab/nsp5A-B304T304IaCtaTt44AY.420.000161
ORF1ab/nsp5A-B304T304IaCtaTt44AY.60.000165
ORF1ab/nsp5A-B304T304IaCtaTt44B.1.10.000073
ORF1ab/nsp5A-B304T304IaCtaTt44B.1.1.3180.001207
ORF1ab/nsp5A-B304T304IaCtaTt44B.1.1.3480.003185
ORF1ab/nsp5A-B304T304AActGct44B.1.1.70.000004
ORF1ab/nsp5A-B304T304IaCtaTt44B.1.1040.01476
ORF1ab/nsp5A-B304T304TacTacC44B.1.20.000035
ORF1ab/nsp5A-B304T304IaCtaTt44B.1.351.20.00121
ORF1ab/nsp5A-B304T304TacTacC44B.1.4290.000094
ORF1ab/nsp5A-B304T304TacTacC44B.6.60.003556
ORF1ab/nsp5A-B304T304IaCtaTt44P.1.100.001078
ORF1ab/nsp5A-B304T304TacTacC44P.20.000747
ORF1ab/nsp5A-B304T304IaCtaTt33A.23.10.002113
ORF1ab/nsp5A-B304T304PActCct33All0.000001
ORF1ab/nsp5A-B304T304IaCtaTt33AY.1000.000138
ORF1ab/nsp5A-B304T304TacTacC33AY.1030.000019
ORF1ab/nsp5A-B304T304IaCtaTt33AY.1140.000693
ORF1ab/nsp5A-B304T304TacTacC33AY.230.000209
ORF1ab/nsp5A-B304T304IaCtaTt33AY.260.000085
ORF1ab/nsp5A-B304T304TacTacC23AY.260.000057
ORF1ab/nsp5A-B304T304TacTacG13AY.260.000028
ORF1ab/nsp5A-B304T304TacTacC33AY.550.002752
ORF1ab/nsp5A-B304T304TacTacC33AY.740.000347
ORF1ab/nsp5A-B304T304TacTacC33AY.820.004071
ORF1ab/nsp5A-B304T304IaCtaTt33B0.000383
ORF1ab/nsp5A-B304T304IaCtaTt33B.1.177.440.001557
ORF1ab/nsp5A-B304T304del1acTac-33B.1.177.820.001432
ORF1ab/nsp5A-B304T304TacTacC33B.1.2650.003812
ORF1ab/nsp5A-B304T304del1acTac-33B.1.3510.000089
ORF1ab/nsp5A-B304T304IaCtaTt33B.1.36.180.001261
ORF1ab/nsp5A-B304T304IaCtaTt33B.1.36.290.001552
ORF1ab/nsp5A-B304T304IaCtaTt33B.1.3690.000856
ORF1ab/nsp5A-B304T304IaCtaTt33B.1.5960.000261
ORF1ab/nsp5A-B304T304delACT---33B.1.617.20.000011
ORF1ab/nsp5A-B304T304IaCtaTt120.055556
ORF1ab/nsp5A-B304T304IaCTaTC120.055556
ORF1ab/nsp5A-B304T304IaCtaTt22AU.20.004843
ORF1ab/nsp5A-B304T304TacTacC22AY.1060.00067
ORF1ab/nsp5A-B304T304NaCtaAt22AY.1200.000074
ORF1ab/nsp5A-B304T304IaCtaTt22AY.200.000078
ORF1ab/nsp5A-B304T304NaCtaAt22AY.250.000012
ORF1ab/nsp5A-B304T304delACT---22AY.250.000012
ORF1ab/nsp5A-B304T304delACT---22AY.290.000032
ORF1ab/nsp5A-B304T304IaCtaTt22AY.290.000032
ORF1ab/nsp5A-B304T304delACT---22AY.4.50.000215
ORF1ab/nsp5A-B304T304TacTacG22AY.440.000012
ORF1ab/nsp5A-B304T304IaCtaTt22AY.50.000041
ORF1ab/nsp5A-B304T304TacTacC22AY.50.000041
ORF1ab/nsp5A-B304T304del1acTac-22AY.520.001629
ORF1ab/nsp5A-B304T304IaCtaTt22AY.9.20.000073
ORF1ab/nsp5A-B304T304IaCtaTt22AY.98.10.000097
ORF1ab/nsp5A-B304T304IaCtaTt22B.1.1.3680.006173
ORF1ab/nsp5A-B304T304IaCtaTt22B.1.1.4340.000697
ORF1ab/nsp5A-B304T304IaCtaTt22B.1.1.500.001358
ORF1ab/nsp5A-B304T304NaCtaAt22B.1.1.70.000002
ORF1ab/nsp5A-B304T304IaCtaTt22B.1.110.30.001437
ORF1ab/nsp5A-B304T304TacTacG22B.1.1600.000062
ORF1ab/nsp5A-B304T304del1acTac-22B.1.1600.000062
ORF1ab/nsp5A-B304T304IaCtaTt22B.1.177.120.000303
ORF1ab/nsp5A-B304T304IaCtaTt22B.1.2100.004264
ORF1ab/nsp5A-B304T304IaCtaTt22B.1.2320.001075
ORF1ab/nsp5A-B304T304IaCtaTt22B.1.2580.000133
ORF1ab/nsp5A-B304T304TacTacC22B.1.3510.000059
ORF1ab/nsp5A-B304T304IaCtaTt22B.1.4290.000047
ORF1ab/nsp5A-B304T304TacTacC22B.1.466.20.000782
ORF1ab/nsp5A-B304T304AActGct22P.10.000032
ORF1ab/nsp5A-B304T304IaCtaTt22Q.30.00029
ORF1ab/nsp5A-B304T304NaCtaAt110.055556
ORF1ab/nsp5A-B304T304TacTacC110.055556
ORF1ab/nsp5A-B304T304IaCtaTt11A0.000387
ORF1ab/nsp5A-B304T304PActCct11A0.000387
ORF1ab/nsp5A-B304T304PActCct11A.2.20.001689
ORF1ab/nsp5A-B304T304GACTGGC11All0
ORF1ab/nsp5A-B304T304VACtGTt11All0
ORF1ab/nsp5A-B304T304DACtGAt11All0
ORF1ab/nsp5A-B304T304del2ACt--t11All0
ORF1ab/nsp5A-B304T304IaCtaTt11AS.10.009524
ORF1ab/nsp5A-B304T304del1acTac-11AY.1000.000046
ORF1ab/nsp5A-B304T304IaCtaTt11AY.1020.000027
ORF1ab/nsp5A-B304T304IaCtaTt11AY.1050.000643
ORF1ab/nsp5A-B304T304TacTacA11AY.1090.00074
ORF1ab/nsp5A-B304T304IaCtaTt11AY.1110.000183
ORF1ab/nsp5A-B304T304IaCtaTt11AY.1160.000287
ORF1ab/nsp5A-B304T304del1acTac-11AY.1180.000063
ORF1ab/nsp5A-B304T304IaCtaTt11AY.1180.000063
ORF1ab/nsp5A-B304T304AActGct11AY.1200.000037
ORF1ab/nsp5A-B304T304IaCtaTt11AY.1210.000135
ORF1ab/nsp5A-B304T304IaCtaTt11AY.140.000088
ORF1ab/nsp5A-B304T304TacTacC11AY.140.000088
ORF1ab/nsp5A-B304T304IaCtaTt11AY.160.00038
ORF1ab/nsp5A-B304T304TacTacC11AY.160.00038
ORF1ab/nsp5A-B304T304TacTacG11AY.200.000039
ORF1ab/nsp5A-B304T304IaCtaTt11AY.220.002092
ORF1ab/nsp5A-B304T304AActGct11AY.250.000006
ORF1ab/nsp5A-B304T304IaCtaTt11AY.270.000065
ORF1ab/nsp5A-B304T304NaCtaAt11AY.290.000016
ORF1ab/nsp5A-B304T304AActGct11AY.30.00001
ORF1ab/nsp5A-B304T304IaCtaTt11AY.340.000097
ORF1ab/nsp5A-B304T304SActTct11AY.360.000148
ORF1ab/nsp5A-B304T304TacTacC11AY.390.000025
ORF1ab/nsp5A-B304T304TacTacC11AY.39.10.00004
ORF1ab/nsp5A-B304T304VACtGTt11AY.40.000002
ORF1ab/nsp5A-B304T304del1acTac-11AY.40.000002
ORF1ab/nsp5A-B304T304TacTacC11AY.4.2.10.000149
ORF1ab/nsp5A-B304T304IaCtaTt11AY.4.2.10.000149
ORF1ab/nsp5A-B304T304IaCtaTt11AY.4.50.000107
ORF1ab/nsp5A-B304T304TacTacC11AY.430.000004
ORF1ab/nsp5A-B304T304SActTct11AY.430.000004
ORF1ab/nsp5A-B304T304del2ACt--t11AY.440.000006
ORF1ab/nsp5A-B304T304delACT---11AY.440.000006
ORF1ab/nsp5A-B304T304IaCtaTt11AY.460.000104
ORF1ab/nsp5A-B304T304IaCtaTt11AY.46.10.001027
ORF1ab/nsp5A-B304T304del1acTac-11AY.46.10.001027
ORF1ab/nsp5A-B304T304TacTacC11AY.480.000465
ORF1ab/nsp5A-B304T304NaCtaAt11AY.5.30.000337
ORF1ab/nsp5A-B304T304TacTacC11AY.540.000095
ORF1ab/nsp5A-B304T304delACT---11AY.540.000095
ORF1ab/nsp5A-B304T304TacTacC11AY.610.000105
ORF1ab/nsp5A-B304T304delACT---11AY.660.00107
ORF1ab/nsp5A-B304T304IaCtaTt11AY.680.000274
ORF1ab/nsp5A-B304T304del1acTac-11AY.720.001361
ORF1ab/nsp5A-B304T304TacTacC11AY.75.10.00018
ORF1ab/nsp5A-B304T304IaCTaTC11AY.9.10.000084
ORF1ab/nsp5A-B304T304TacTacC11AY.9.20.000037
ORF1ab/nsp5A-B304T304IaCtaTt11AY.980.000079
ORF1ab/nsp5A-B304T304TacTacC11AY.980.000079
ORF1ab/nsp5A-B304T304IaCtaTt11AY.99.20.000092
ORF1ab/nsp5A-B304T304IaCtaTt11AZ.20.000821
ORF1ab/nsp5A-B304T304delACT---11AZ.50.003509
ORF1ab/nsp5A-B304T304delACT---11B.1.10.000018
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1.10.000327
ORF1ab/nsp5A-B304T304delACT---11B.1.1.1590.004673
ORF1ab/nsp5A-B304T304TacTacC11B.1.1.1610.003534
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1.2140.000055
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1.2840.000107
ORF1ab/nsp5A-B304T304TacTacC11B.1.1.2940.001266
ORF1ab/nsp5A-B304T304delACT---11B.1.1.3060.000438
ORF1ab/nsp5A-B304T304TacTacC11B.1.1.3310.011628
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1.3440.010753
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1.370.000193
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1.380.058824
ORF1ab/nsp5A-B304T304PActCct11B.1.1.3980.003226
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1.4060.006494
ORF1ab/nsp5A-B304T304delACT---11B.1.1.4090.002833
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1.700.000341
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1280.000635
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1460.004237
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1600.000031
ORF1ab/nsp5A-B304T304SaCtaGt11B.1.1600.000031
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.160.160.000929
ORF1ab/nsp5A-B304T304NaCtaAt11B.1.160.260.002421
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.1770.000013
ORF1ab/nsp5A-B304T304delACT---11B.1.1770.000013
ORF1ab/nsp5A-B304T304delACT---11B.1.177.150.000631
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.177.180.00116
ORF1ab/nsp5A-B304T304TacTacG11B.1.177.210.000076
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.177.40.000211
ORF1ab/nsp5A-B304T304delACT---11B.1.177.40.000211
ORF1ab/nsp5A-B304T304TacTacC11B.1.177.570.000281
ORF1ab/nsp5A-B304T304del1acTac-11B.1.177.60.000977
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.177.600.000218
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.177.650.000665
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.177.730.000566
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.177.770.000726
ORF1ab/nsp5A-B304T304delACT---11B.1.177.830.001481
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.177.860.000183
ORF1ab/nsp5A-B304T304delACT---11B.1.2100.002132
ORF1ab/nsp5A-B304T304TacTacG11B.1.2340.000132
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.2340.000132
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.2360.002053
ORF1ab/nsp5A-B304T304TacTacC11B.1.2430.00007
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.258.170.000104
ORF1ab/nsp5A-B304T304TacTacC11B.1.258.60.019608
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.3200.001245
ORF1ab/nsp5A-B304T304TacTacC11B.1.3490.000715
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.351.30.000876
ORF1ab/nsp5A-B304T304AActGct11B.1.360.000146
ORF1ab/nsp5A-B304T304del1acTac-11B.1.36.10.00114
ORF1ab/nsp5A-B304T304GACTGGC11B.1.36.290.000517
ORF1ab/nsp5A-B304T304TacTacC11B.1.3750.00082
ORF1ab/nsp5A-B304T304SActTct11B.1.3800.006623
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.4020.009804
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.4090.000781
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.4260.001009
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.4710.002732
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.5230.002451
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.5610.000397
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.5670.003333
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.5740.002151
ORF1ab/nsp5A-B304T304NaCtaAt11B.1.5760.000907
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.5770.000687
ORF1ab/nsp5A-B304T304DACtGAt11B.1.617.20.000004
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.6210.000089
ORF1ab/nsp5A-B304T304IaCtaTt11B.1.6230.000536
ORF1ab/nsp5A-B304T304IaCtaTt11B.400.000364
ORF1ab/nsp5A-B304T304TacTacA11B.60.00091
ORF1ab/nsp5A-B304T304IaCtaTt11C.2.10.006667
ORF1ab/nsp5A-B304T304IaCtaTt11C.350.000774
ORF1ab/nsp5A-B304T304IaCtaTt11C.36.30.000567
ORF1ab/nsp5A-B304T304TacTacC11C.370.000116
ORF1ab/nsp5A-B304T304TacTacC11D.20.000075
ORF1ab/nsp5A-B304T304IaCtaTt11D.20.000075
ORF1ab/nsp5A-B304T304delACT---11N.40.004255
ORF1ab/nsp5A-B304T304IaCtaTt11P.1.120.000484
ORF1ab/nsp5A-B304T304IaCtaTt11P.1.130.000898
ORF1ab/nsp5A-B304T304IaCtaTt11P.1.140.000048
ORF1ab/nsp5A-B304T304TacTacC11P.1.80.004785
ORF1ab/nsp5A-B304T304IaCtaTt11Q.10.000126
ORF1ab/nsp5A-B304T304delACT---11Q.80.000165
ORF1ab/nsp5A-B304T304IaCtaTt11R.10.00009
ORF1ab/nsp5A-B304T304del1acTac-11R.10.00009