CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 302

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B302G302GG3565GsynggTggC2432280.93827210958-10960
ORF1ab/nsp5A-B302G302GG3565GsynggTggG243120.049382710958-10960
ORF1ab/nsp5A-B302G302GG3565GsynggTggA24330.012345710958-10960
ORF1ab/nsp5A-B302G302CG3565CnonsynGgtTgt4444110958-10960
ORF1ab/nsp5A-B302G302delG3565deldelGGT---4242110958-10960
ORF1ab/nsp5A-B302G302VG3565VnonsyngGtgTt30290.96666710958-10960
ORF1ab/nsp5A-B302G302VG3565VnonsyngGTgTC3010.033333310958-10960
ORF1ab/nsp5A-B302G302SG3565SnonsynGgtAgt1414110958-10960
ORF1ab/nsp5A-B302G302DG3565DnonsyngGtgAt33110958-10960
ORF1ab/nsp5A-B302G302AG3565AnonsyngGtgCt33110958-10960
ORF1ab/nsp5A-B302G302del1G3565del1delggTgg-22110958-10960
ORF1ab/nsp5A-B302G302RG3565RnonsynGgTAgA11110958-10960
ORF1ab/nsp5A-B302G302NG3565NnonsynGGtAAt11110958-10960

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B302G302GggTggC228243All0.000044
ORF1ab/nsp5A-B302G302GggTggG12243All0.000002
ORF1ab/nsp5A-B302G302GggTggA3243All0.000001
ORF1ab/nsp5A-B302G302GggTggC9798B.1.1.70.000087
ORF1ab/nsp5A-B302G302GggTggA198B.1.1.70.000001
ORF1ab/nsp5A-B302G302CGgtTgt4444All0.000008
ORF1ab/nsp5A-B302G302delGGT---4242All0.000008
ORF1ab/nsp5A-B302G302GggTggC4242AY.30.000418
ORF1ab/nsp5A-B302G302VgGtgTt2930All0.000006
ORF1ab/nsp5A-B302G302VgGTgTC130All0
ORF1ab/nsp5A-B302G302GggTggC2525B.1.3230.520833
ORF1ab/nsp5A-B302G302VgGtgTt2525D.20.001876
ORF1ab/nsp5A-B302G302GggTggC1515B.1.617.20.000056
ORF1ab/nsp5A-B302G302SGgtAgt1414All0.000003
ORF1ab/nsp5A-B302G302GggTggC1212AY.1050.007717
ORF1ab/nsp5A-B302G302delGGT---1212B.1.1.70.000011
ORF1ab/nsp5A-B302G302GggTggC77AY.440.000043
ORF1ab/nsp5A-B302G302CGgtTgt77AY.440.000043
ORF1ab/nsp5A-B302G302delGGT---66AY.40.000009
ORF1ab/nsp5A-B302G302GggTggG35AY.40.000005
ORF1ab/nsp5A-B302G302GggTggC25AY.40.000003
ORF1ab/nsp5A-B302G302CGgtTgt55B.10.000046
ORF1ab/nsp5A-B302G302CGgtTgt55B.1.1.70.000004
ORF1ab/nsp5A-B302G302delGGT---440.222222
ORF1ab/nsp5A-B302G302SGgtAgt44AY.430.000018
ORF1ab/nsp5A-B302G302DgGtgAt33All0.000001
ORF1ab/nsp5A-B302G302AgGtgCt33All0.000001
ORF1ab/nsp5A-B302G302CGgtTgt33AY.250.000018
ORF1ab/nsp5A-B302G302GggTggC33AY.270.000194
ORF1ab/nsp5A-B302G302GggTggC23B.10.000018
ORF1ab/nsp5A-B302G302GggTggA13B.10.000009
ORF1ab/nsp5A-B302G302GggTggC33B.1.4290.000071
ORF1ab/nsp5A-B302G302AgGtgCt33U.30.011583
ORF1ab/nsp5A-B302G302SGgtAgt220.111111
ORF1ab/nsp5A-B302G302del1ggTgg-22All0
ORF1ab/nsp5A-B302G302GggTggC22AY.1020.000053
ORF1ab/nsp5A-B302G302GggTggC22AY.1170.000169
ORF1ab/nsp5A-B302G302GggTggC22AY.130.000322
ORF1ab/nsp5A-B302G302delGGT---22AY.250.000012
ORF1ab/nsp5A-B302G302GggTggG12AY.250.000006
ORF1ab/nsp5A-B302G302GggTggC12AY.250.000006
ORF1ab/nsp5A-B302G302delGGT---22AY.290.000032
ORF1ab/nsp5A-B302G302GggTggG12AY.4.20.000022
ORF1ab/nsp5A-B302G302GggTggC12AY.4.20.000022
ORF1ab/nsp5A-B302G302delGGT---22AY.4.50.000215
ORF1ab/nsp5A-B302G302CGgtTgt22AY.99.20.000184
ORF1ab/nsp5A-B302G302CGgtTgt22B.1.10.000036
ORF1ab/nsp5A-B302G302SGgtAgt22B.1.1.70.000002
ORF1ab/nsp5A-B302G302CGgtTgt22B.1.1600.000062
ORF1ab/nsp5A-B302G302GggTggC22B.1.1770.000026
ORF1ab/nsp5A-B302G302VgGtgTt22B.1.1770.000026
ORF1ab/nsp5A-B302G302CGgtTgt22B.400.000729
ORF1ab/nsp5A-B302G302GggTggC12D.20.000075
ORF1ab/nsp5A-B302G302GggTggG12D.20.000075
ORF1ab/nsp5A-B302G302DgGtgAt110.055556
ORF1ab/nsp5A-B302G302CGgtTgt110.055556
ORF1ab/nsp5A-B302G302NGGtAAt110.055556
ORF1ab/nsp5A-B302G302RGgTAgA11All0
ORF1ab/nsp5A-B302G302NGGtAAt11All0
ORF1ab/nsp5A-B302G302CGgtTgt11AY.1020.000027
ORF1ab/nsp5A-B302G302GggTggC11AY.1030.000006
ORF1ab/nsp5A-B302G302CGgtTgt11AY.1030.000006
ORF1ab/nsp5A-B302G302SGgtAgt11AY.1030.000006
ORF1ab/nsp5A-B302G302SGgtAgt11AY.250.000006
ORF1ab/nsp5A-B302G302GggTggC11AY.290.000016
ORF1ab/nsp5A-B302G302GggTggG11AY.300.000396
ORF1ab/nsp5A-B302G302GggTggC11AY.330.000067
ORF1ab/nsp5A-B302G302GggTggG11AY.380.000499
ORF1ab/nsp5A-B302G302CGgtTgt11AY.40.000002
ORF1ab/nsp5A-B302G302RGgTAgA11AY.430.000004
ORF1ab/nsp5A-B302G302delGGT---11AY.440.000006
ORF1ab/nsp5A-B302G302delGGT---11AY.540.000095
ORF1ab/nsp5A-B302G302CGgtTgt11AY.610.000105
ORF1ab/nsp5A-B302G302delGGT---11AY.660.00107
ORF1ab/nsp5A-B302G302CGgtTgt11AY.740.000116
ORF1ab/nsp5A-B302G302GggTggG11AY.980.000079
ORF1ab/nsp5A-B302G302SGgtAgt11B.10.000009
ORF1ab/nsp5A-B302G302DgGtgAt11B.1.10.000018
ORF1ab/nsp5A-B302G302SGgtAgt11B.1.10.000018
ORF1ab/nsp5A-B302G302delGGT---11B.1.10.000018
ORF1ab/nsp5A-B302G302del1ggTgg-11B.1.1.1180.010204
ORF1ab/nsp5A-B302G302delGGT---11B.1.1.1590.004673
ORF1ab/nsp5A-B302G302GggTggC11B.1.1.1860.003436
ORF1ab/nsp5A-B302G302delGGT---11B.1.1.3060.000438
ORF1ab/nsp5A-B302G302CGgtTgt11B.1.1.4020.011111
ORF1ab/nsp5A-B302G302delGGT---11B.1.1.4090.002833
ORF1ab/nsp5A-B302G302CGgtTgt11B.1.1.4480.002033
ORF1ab/nsp5A-B302G302VgGtgTt11B.1.1.70.000001
ORF1ab/nsp5A-B302G302DgGtgAt11B.1.1.70.000001
ORF1ab/nsp5A-B302G302GggTggA11B.1.1600.000031
ORF1ab/nsp5A-B302G302VgGtgTt11B.1.160.160.000929
ORF1ab/nsp5A-B302G302delGGT---11B.1.1770.000013
ORF1ab/nsp5A-B302G302delGGT---11B.1.177.150.000631
ORF1ab/nsp5A-B302G302GggTggG11B.1.177.160.000664
ORF1ab/nsp5A-B302G302GggTggG11B.1.177.40.000211
ORF1ab/nsp5A-B302G302delGGT---11B.1.177.40.000211
ORF1ab/nsp5A-B302G302delGGT---11B.1.177.830.001481
ORF1ab/nsp5A-B302G302CGgtTgt11B.1.177.860.000183
ORF1ab/nsp5A-B302G302GggTggC11B.1.20.000009
ORF1ab/nsp5A-B302G302SGgtAgt11B.1.20.000009
ORF1ab/nsp5A-B302G302CGgtTgt11B.1.20.000009
ORF1ab/nsp5A-B302G302delGGT---11B.1.2100.002132
ORF1ab/nsp5A-B302G302GggTggC11B.1.2640.012346
ORF1ab/nsp5A-B302G302VgGTgTC11B.1.3510.00003
ORF1ab/nsp5A-B302G302CGgtTgt11B.1.360.000146
ORF1ab/nsp5A-B302G302SGgtAgt11B.1.36.170.000494
ORF1ab/nsp5A-B302G302CGgtTgt11B.1.36.180.00042
ORF1ab/nsp5A-B302G302GggTggC11B.1.36.290.000517
ORF1ab/nsp5A-B302G302GggTggG11B.1.5960.000087
ORF1ab/nsp5A-B302G302CGgtTgt11B.1.5960.000087
ORF1ab/nsp5A-B302G302delGGT---11B.1.617.20.000004
ORF1ab/nsp5A-B302G302CGgtTgt11B.1.617.20.000004
ORF1ab/nsp5A-B302G302del1ggTgg-11B.1.6280.000352
ORF1ab/nsp5A-B302G302GggTggC11B.1.80.001972
ORF1ab/nsp5A-B302G302CGgtTgt11B.310.003731
ORF1ab/nsp5A-B302G302CGgtTgt11D.20.000075
ORF1ab/nsp5A-B302G302delGGT---11N.40.004255
ORF1ab/nsp5A-B302G302GggTggC11P.10.000016