CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 298 | R298R | R3561R | syn | agA | agG | 1703 | 1701 | 0.998826 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298R | R3561R | syn | Aga | Cga | 1703 | 2 | 0.0011744 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298K | R3561K | nonsyn | aGa | aAa | 365 | 365 | 1 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298G | R3561G | nonsyn | Aga | Gga | 261 | 260 | 0.996169 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298G | R3561G | nonsyn | AgA | GgG | 261 | 1 | 0.00383142 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298S | R3561S | nonsyn | agA | agC | 148 | 135 | 0.912162 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298S | R3561S | nonsyn | agA | agT | 148 | 13 | 0.0878378 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298I | R3561I | nonsyn | aGa | aTa | 54 | 54 | 1 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298del | R3561del | del | AGA | --- | 42 | 42 | 1 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298T | R3561T | nonsyn | aGa | aCa | 10 | 7 | 0.7 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298T | R3561T | nonsyn | aGA | aCG | 10 | 3 | 0.3 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298del1 | R3561del1 | del | Aga | -ga | 5 | 5 | 1 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298X | R3561X | nonsyn | Aga | Tga | 4 | 4 | 1 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298V | R3561V | nonsyn | AGA | GTG | 3 | 2 | 0.666667 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298V | R3561V | nonsyn | AGa | GTa | 3 | 1 | 0.333333 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298M | R3561M | nonsyn | aGA | aTG | 2 | 2 | 1 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298Q | R3561Q | nonsyn | AGa | CAa | 1 | 1 | 1 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298C | R3561C | nonsyn | AgA | TgT | 1 | 1 | 1 | 10946-10948 |
ORF1ab/nsp5A-B | 298 | R298L | R3561L | nonsyn | AGA | TTG | 1 | 1 | 1 | 10946-10948 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1701 | 1703 | All | 0.000325 |
ORF1ab/nsp5A-B | 298 | R298R | Aga | Cga | 2 | 1703 | All | 0 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 834 | 834 | B.1.1.207 | 0.985816 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 449 | 449 | B.1.1 | 0.008145 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 365 | 365 | All | 0.00007 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 260 | 261 | All | 0.00005 |
ORF1ab/nsp5A-B | 298 | R298G | AgA | GgG | 1 | 261 | All | 0 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 224 | 224 | AY.4 | 0.000349 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 189 | 189 | AY.4 | 0.000294 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 135 | 148 | All | 0.000026 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agT | 13 | 148 | All | 0.000002 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 143 | 143 | B.1.1.41 | 0.905063 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 86 | 86 | B.1.1.344 | 0.924731 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 79 | 79 | B.1.1.7 | 0.000071 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 55 | 55 | B.1.370 | 0.44 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 54 | 54 | All | 0.00001 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 42 | 42 | All | 0.000008 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 26 | 26 | B.1.429 | 0.000612 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 24 | 25 | B.1.1.7 | 0.000021 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agT | 1 | 25 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 18 | 18 | AY.85 | 0.007689 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 14 | 14 | B.1.1.189 | 0.02118 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp5A-B | 298 | R298T | aGa | aCa | 7 | 10 | All | 0.000001 |
ORF1ab/nsp5A-B | 298 | R298T | aGA | aCG | 3 | 10 | All | 0.000001 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agT | 7 | 7 | B.1.497 | 0.002203 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp5A-B | 298 | R298del1 | Aga | -ga | 5 | 5 | All | 0.000001 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp5A-B | 298 | R298X | Aga | Tga | 4 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agT | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 4 | 4 | B.1.222 | 0.006768 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp5A-B | 298 | R298V | AGA | GTG | 2 | 3 | All | 0 |
ORF1ab/nsp5A-B | 298 | R298V | AGa | GTa | 1 | 3 | All | 0 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 298 | R298T | aGA | aCG | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 298 | R298V | AGa | GTa | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 298 | R298V | AGA | GTG | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 298 | R298G | AgA | GgG | 1 | 2 | 0.055556 | |
ORF1ab/nsp5A-B | 298 | R298M | aGA | aTG | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp5A-B | 298 | R298del1 | Aga | -ga | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 2 | 2 | B.1.1.365 | 0.011173 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 2 | 2 | B.1.1.410 | 0.074074 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp5A-B | 298 | R298T | aGa | aCa | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 298 | R298T | aGA | aCG | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 298 | R298T | aGa | aCa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp5A-B | 298 | R298M | aGA | aTG | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 298 | R298X | Aga | Tga | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 298 | R298Q | AGa | CAa | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 298 | R298C | AgA | TgT | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 298 | R298L | AGA | TTG | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp5A-B | 298 | R298T | aGa | aCa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp5A-B | 298 | R298T | aGa | aCa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp5A-B | 298 | R298T | aGa | aCa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 298 | R298X | Aga | Tga | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 298 | R298X | Aga | Tga | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 298 | R298M | aGA | aTG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 298 | R298V | AGA | GTG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 298 | R298L | AGA | TTG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | B.1.1.113 | 0.006993 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.1.1.283 | 0.023256 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | B.1.1.310 | 0.015152 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 298 | R298C | AgA | TgT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 298 | R298R | Aga | Cga | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298del1 | Aga | -ga | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp5A-B | 298 | R298T | aGa | aCa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 298 | R298Q | AGa | CAa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 298 | R298R | Aga | Cga | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp5A-B | 298 | R298del1 | Aga | -ga | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp5A-B | 298 | R298G | Aga | Gga | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 298 | R298del1 | Aga | -ga | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp5A-B | 298 | R298S | agA | agC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp5A-B | 298 | R298X | Aga | Tga | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 298 | R298I | aGa | aTa | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp5A-B | 298 | R298del | AGA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp5A-B | 298 | R298R | agA | agG | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp5A-B | 298 | R298K | aGa | aAa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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