CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 298

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B298R298RR3561RsynagAagG170317010.99882610946-10948
ORF1ab/nsp5A-B298R298RR3561RsynAgaCga170320.001174410946-10948
ORF1ab/nsp5A-B298R298KR3561KnonsynaGaaAa365365110946-10948
ORF1ab/nsp5A-B298R298GR3561GnonsynAgaGga2612600.99616910946-10948
ORF1ab/nsp5A-B298R298GR3561GnonsynAgAGgG26110.0038314210946-10948
ORF1ab/nsp5A-B298R298SR3561SnonsynagAagC1481350.91216210946-10948
ORF1ab/nsp5A-B298R298SR3561SnonsynagAagT148130.087837810946-10948
ORF1ab/nsp5A-B298R298IR3561InonsynaGaaTa5454110946-10948
ORF1ab/nsp5A-B298R298delR3561deldelAGA---4242110946-10948
ORF1ab/nsp5A-B298R298TR3561TnonsynaGaaCa1070.710946-10948
ORF1ab/nsp5A-B298R298TR3561TnonsynaGAaCG1030.310946-10948
ORF1ab/nsp5A-B298R298del1R3561del1delAga-ga55110946-10948
ORF1ab/nsp5A-B298R298XR3561XnonsynAgaTga44110946-10948
ORF1ab/nsp5A-B298R298VR3561VnonsynAGAGTG320.66666710946-10948
ORF1ab/nsp5A-B298R298VR3561VnonsynAGaGTa310.33333310946-10948
ORF1ab/nsp5A-B298R298MR3561MnonsynaGAaTG22110946-10948
ORF1ab/nsp5A-B298R298QR3561QnonsynAGaCAa11110946-10948
ORF1ab/nsp5A-B298R298CR3561CnonsynAgATgT11110946-10948
ORF1ab/nsp5A-B298R298LR3561LnonsynAGATTG11110946-10948

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B298R298RagAagG17011703All0.000325
ORF1ab/nsp5A-B298R298RAgaCga21703All0
ORF1ab/nsp5A-B298R298RagAagG834834B.1.1.2070.985816
ORF1ab/nsp5A-B298R298RagAagG449449B.1.10.008145
ORF1ab/nsp5A-B298R298KaGaaAa365365All0.00007
ORF1ab/nsp5A-B298R298GAgaGga260261All0.00005
ORF1ab/nsp5A-B298R298GAgAGgG1261All0
ORF1ab/nsp5A-B298R298GAgaGga224224AY.40.000349
ORF1ab/nsp5A-B298R298KaGaaAa189189AY.40.000294
ORF1ab/nsp5A-B298R298SagAagC135148All0.000026
ORF1ab/nsp5A-B298R298SagAagT13148All0.000002
ORF1ab/nsp5A-B298R298RagAagG143143B.1.1.410.905063
ORF1ab/nsp5A-B298R298RagAagG8686B.1.1.3440.924731
ORF1ab/nsp5A-B298R298RagAagG7979B.1.1.70.000071
ORF1ab/nsp5A-B298R298KaGaaAa5555B.1.3700.44
ORF1ab/nsp5A-B298R298IaGaaTa5454All0.00001
ORF1ab/nsp5A-B298R298delAGA---4242All0.000008
ORF1ab/nsp5A-B298R298RagAagG3030B.10.000275
ORF1ab/nsp5A-B298R298KaGaaAa2626B.1.4290.000612
ORF1ab/nsp5A-B298R298SagAagC2425B.1.1.70.000021
ORF1ab/nsp5A-B298R298SagAagT125B.1.1.70.000001
ORF1ab/nsp5A-B298R298KaGaaAa1818AY.850.007689
ORF1ab/nsp5A-B298R298SagAagC1414AY.260.000396
ORF1ab/nsp5A-B298R298RagAagG1414B.1.1.1890.02118
ORF1ab/nsp5A-B298R298delAGA---1313B.1.1.70.000012
ORF1ab/nsp5A-B298R298SagAagC1212AY.250.000072
ORF1ab/nsp5A-B298R298TaGaaCa710All0.000001
ORF1ab/nsp5A-B298R298TaGAaCG310All0.000001
ORF1ab/nsp5A-B298R298KaGaaAa1010B.1.1.70.000009
ORF1ab/nsp5A-B298R298IaGaaTa1010B.1.617.20.000038
ORF1ab/nsp5A-B298R298KaGaaAa88AY.440.000049
ORF1ab/nsp5A-B298R298KaGaaAa88B.1.177.860.001468
ORF1ab/nsp5A-B298R298KaGaaAa88B.1.617.20.00003
ORF1ab/nsp5A-B298R298SagAagT77B.1.4970.002203
ORF1ab/nsp5A-B298R298SagAagC77B.1.617.20.000026
ORF1ab/nsp5A-B298R298RagAagG66AY.1060.002009
ORF1ab/nsp5A-B298R298delAGA---66AY.40.000009
ORF1ab/nsp5A-B298R298SagAagC66AY.40.000009
ORF1ab/nsp5A-B298R298SagAagC66AY.610.000629
ORF1ab/nsp5A-B298R298RagAagG66B.1.1.5190.000238
ORF1ab/nsp5A-B298R298SagAagC66P.10.000095
ORF1ab/nsp5A-B298R298del1Aga-ga55All0.000001
ORF1ab/nsp5A-B298R298KaGaaAa55AY.250.00003
ORF1ab/nsp5A-B298R298IaGaaTa55AY.40.000008
ORF1ab/nsp5A-B298R298SagAagC55AY.440.00003
ORF1ab/nsp5A-B298R298XAgaTga44All0.000001
ORF1ab/nsp5A-B298R298SagAagC44AY.1030.000025
ORF1ab/nsp5A-B298R298KaGaaAa44AY.1030.000025
ORF1ab/nsp5A-B298R298GAgaGga44AY.390.000099
ORF1ab/nsp5A-B298R298RagAagG44AY.40.000006
ORF1ab/nsp5A-B298R298GAgaGga44AY.440.000024
ORF1ab/nsp5A-B298R298RagAagG44AY.440.000024
ORF1ab/nsp5A-B298R298SagAagC44AY.470.000124
ORF1ab/nsp5A-B298R298SagAagC44AY.750.000224
ORF1ab/nsp5A-B298R298SagAagC34B.10.000027
ORF1ab/nsp5A-B298R298SagAagT14B.10.000009
ORF1ab/nsp5A-B298R298IaGaaTa44B.1.20.000035
ORF1ab/nsp5A-B298R298RagAagG44B.1.2220.006768
ORF1ab/nsp5A-B298R298RagAagG44B.1.6090.001918
ORF1ab/nsp5A-B298R298GAgaGga44B.1.617.20.000015
ORF1ab/nsp5A-B298R298VAGAGTG23All0
ORF1ab/nsp5A-B298R298VAGaGTa13All0
ORF1ab/nsp5A-B298R298SagAagC33AY.1020.00008
ORF1ab/nsp5A-B298R298SagAagC33AY.130.000483
ORF1ab/nsp5A-B298R298KaGaaAa33AY.430.000013
ORF1ab/nsp5A-B298R298SagAagC33AY.430.000013
ORF1ab/nsp5A-B298R298GAgaGga33AY.430.000013
ORF1ab/nsp5A-B298R298SagAagC33AY.75.10.000541
ORF1ab/nsp5A-B298R298GAgaGga33B.1.1770.00004
ORF1ab/nsp5A-B298R298KaGaaAa33B.1.1770.00004
ORF1ab/nsp5A-B298R298RagAagG33P.10.000047
ORF1ab/nsp5A-B298R298SagAagC33P.1.150.000697
ORF1ab/nsp5A-B298R298delAGA---220.111111
ORF1ab/nsp5A-B298R298TaGAaCG220.111111
ORF1ab/nsp5A-B298R298GAgaGga120.055556
ORF1ab/nsp5A-B298R298VAGaGTa120.055556
ORF1ab/nsp5A-B298R298VAGAGTG120.055556
ORF1ab/nsp5A-B298R298GAgAGgG120.055556
ORF1ab/nsp5A-B298R298MaGAaTG22All0
ORF1ab/nsp5A-B298R298IaGaaTa22AY.1030.000012
ORF1ab/nsp5A-B298R298delAGA---22AY.250.000012
ORF1ab/nsp5A-B298R298KaGaaAa22AY.260.000057
ORF1ab/nsp5A-B298R298RagAagG22AY.290.000032
ORF1ab/nsp5A-B298R298KaGaaAa22AY.30.00002
ORF1ab/nsp5A-B298R298RagAagG22AY.390.000049
ORF1ab/nsp5A-B298R298del1Aga-ga22AY.40.000003
ORF1ab/nsp5A-B298R298SagAagC22AY.4.20.000043
ORF1ab/nsp5A-B298R298IaGaaTa22AY.4.50.000215
ORF1ab/nsp5A-B298R298IaGaaTa22AY.430.000009
ORF1ab/nsp5A-B298R298IaGaaTa22AY.440.000012
ORF1ab/nsp5A-B298R298delAGA---22AY.440.000012
ORF1ab/nsp5A-B298R298KaGaaAa22AY.610.00021
ORF1ab/nsp5A-B298R298SagAagC22AY.700.000417
ORF1ab/nsp5A-B298R298SagAagC22AY.9.20.000073
ORF1ab/nsp5A-B298R298IaGaaTa22AY.98.10.000097
ORF1ab/nsp5A-B298R298RagAagG22AY.98.10.000097
ORF1ab/nsp5A-B298R298IaGaaTa22B.10.000018
ORF1ab/nsp5A-B298R298KaGaaAa22B.10.000018
ORF1ab/nsp5A-B298R298RagAagG22B.1.1.3650.011173
ORF1ab/nsp5A-B298R298RagAagG22B.1.1.4100.074074
ORF1ab/nsp5A-B298R298GAgaGga22B.1.1.5190.000079
ORF1ab/nsp5A-B298R298TaGaaCa12B.1.1.70.000001
ORF1ab/nsp5A-B298R298TaGAaCG12B.1.1.70.000001
ORF1ab/nsp5A-B298R298IaGaaTa22B.1.1770.000026
ORF1ab/nsp5A-B298R298IaGaaTa22B.1.177.70.00033
ORF1ab/nsp5A-B298R298RagAagG22B.1.20.000018
ORF1ab/nsp5A-B298R298TaGaaCa22B.1.20.000018
ORF1ab/nsp5A-B298R298IaGaaTa22B.1.2210.000142
ORF1ab/nsp5A-B298R298SagAagC22B.1.4270.000101
ORF1ab/nsp5A-B298R298SagAagC22B.1.4290.000047
ORF1ab/nsp5A-B298R298RagAagG22B.1.617.20.000008
ORF1ab/nsp5A-B298R298IaGaaTa22D.20.00015
ORF1ab/nsp5A-B298R298MaGAaTG110.055556
ORF1ab/nsp5A-B298R298RagAagG110.055556
ORF1ab/nsp5A-B298R298IaGaaTa110.055556
ORF1ab/nsp5A-B298R298SagAagC11A0.000387
ORF1ab/nsp5A-B298R298KaGaaAa11A0.000387
ORF1ab/nsp5A-B298R298XAgaTga11A.10.000282
ORF1ab/nsp5A-B298R298SagAagC11A.23.10.000704
ORF1ab/nsp5A-B298R298QAGaCAa11All0
ORF1ab/nsp5A-B298R298CAgATgT11All0
ORF1ab/nsp5A-B298R298LAGATTG11All0
ORF1ab/nsp5A-B298R298GAgaGga11AY.1020.000027
ORF1ab/nsp5A-B298R298RagAagG11AY.1030.000006
ORF1ab/nsp5A-B298R298SagAagC11AY.1110.000183
ORF1ab/nsp5A-B298R298TaGaaCa11AY.1190.000035
ORF1ab/nsp5A-B298R298GAgaGga11AY.1190.000035
ORF1ab/nsp5A-B298R298KaGaaAa11AY.160.00038
ORF1ab/nsp5A-B298R298SagAagC11AY.190.00114
ORF1ab/nsp5A-B298R298SagAagC11AY.20.000356
ORF1ab/nsp5A-B298R298TaGaaCa11AY.200.000039
ORF1ab/nsp5A-B298R298RagAagG11AY.250.000006
ORF1ab/nsp5A-B298R298RagAagG11AY.270.000065
ORF1ab/nsp5A-B298R298delAGA---11AY.290.000016
ORF1ab/nsp5A-B298R298SagAagC11AY.29.10.000221
ORF1ab/nsp5A-B298R298TaGaaCa11AY.30.00001
ORF1ab/nsp5A-B298R298SagAagC11AY.30.00001
ORF1ab/nsp5A-B298R298RagAagG11AY.30.00001
ORF1ab/nsp5A-B298R298GAgaGga11AY.320.000532
ORF1ab/nsp5A-B298R298KaGaaAa11AY.390.000025
ORF1ab/nsp5A-B298R298XAgaTga11AY.40.000002
ORF1ab/nsp5A-B298R298KaGaaAa11AY.4.20.000022
ORF1ab/nsp5A-B298R298SagAagC11AY.4.2.10.000149
ORF1ab/nsp5A-B298R298GAgaGga11AY.4.2.10.000149
ORF1ab/nsp5A-B298R298IaGaaTa11AY.4.2.10.000149
ORF1ab/nsp5A-B298R298GAgaGga11AY.4.50.000107
ORF1ab/nsp5A-B298R298delAGA---11AY.4.50.000107
ORF1ab/nsp5A-B298R298IaGaaTa11AY.420.00004
ORF1ab/nsp5A-B298R298delAGA---11AY.430.000004
ORF1ab/nsp5A-B298R298GAgaGga11AY.460.000104
ORF1ab/nsp5A-B298R298SagAagT11AY.5.40.000277
ORF1ab/nsp5A-B298R298KaGaaAa11AY.540.000095
ORF1ab/nsp5A-B298R298delAGA---11AY.540.000095
ORF1ab/nsp5A-B298R298RagAagG11AY.60.000041
ORF1ab/nsp5A-B298R298KaGaaAa11AY.60.000041
ORF1ab/nsp5A-B298R298IaGaaTa11AY.640.000595
ORF1ab/nsp5A-B298R298delAGA---11AY.660.00107
ORF1ab/nsp5A-B298R298IaGaaTa11AY.670.000464
ORF1ab/nsp5A-B298R298RagAagG11AY.7.10.000113
ORF1ab/nsp5A-B298R298RagAagG11AY.700.000209
ORF1ab/nsp5A-B298R298IaGaaTa11AY.750.000056
ORF1ab/nsp5A-B298R298SagAagC11AY.840.000437
ORF1ab/nsp5A-B298R298IaGaaTa11AY.9.10.000084
ORF1ab/nsp5A-B298R298RagAagG11AY.99.20.000092
ORF1ab/nsp5A-B298R298delAGA---11B0.000128
ORF1ab/nsp5A-B298R298XAgaTga11B.10.000009
ORF1ab/nsp5A-B298R298delAGA---11B.10.000009
ORF1ab/nsp5A-B298R298delAGA---11B.1.10.000018
ORF1ab/nsp5A-B298R298MaGAaTG11B.1.10.000018
ORF1ab/nsp5A-B298R298SagAagT11B.1.10.000018
ORF1ab/nsp5A-B298R298KaGaaAa11B.1.10.000018
ORF1ab/nsp5A-B298R298VAGAGTG11B.1.10.000018
ORF1ab/nsp5A-B298R298LAGATTG11B.1.10.000018
ORF1ab/nsp5A-B298R298SagAagC11B.1.1.1130.006993
ORF1ab/nsp5A-B298R298delAGA---11B.1.1.1590.004673
ORF1ab/nsp5A-B298R298RagAagG11B.1.1.1610.003534
ORF1ab/nsp5A-B298R298RagAagG11B.1.1.2050.003717
ORF1ab/nsp5A-B298R298RagAagG11B.1.1.2140.000055
ORF1ab/nsp5A-B298R298IaGaaTa11B.1.1.2360.006897
ORF1ab/nsp5A-B298R298KaGaaAa11B.1.1.2830.023256
ORF1ab/nsp5A-B298R298delAGA---11B.1.1.3060.000438
ORF1ab/nsp5A-B298R298IaGaaTa11B.1.1.3100.015152
ORF1ab/nsp5A-B298R298SagAagT11B.1.1.3180.000302
ORF1ab/nsp5A-B298R298RagAagG11B.1.1.3340.016393
ORF1ab/nsp5A-B298R298delAGA---11B.1.1.4090.002833
ORF1ab/nsp5A-B298R298RagAagG11B.1.1.4160.000905
ORF1ab/nsp5A-B298R298KaGaaAa11B.1.1.670.004566
ORF1ab/nsp5A-B298R298GAgaGga11B.1.1.70.000001
ORF1ab/nsp5A-B298R298GAgaGga11B.1.1600.000031
ORF1ab/nsp5A-B298R298CAgATgT11B.1.1600.000031
ORF1ab/nsp5A-B298R298RAgaCga11B.1.1770.000013
ORF1ab/nsp5A-B298R298delAGA---11B.1.1770.000013
ORF1ab/nsp5A-B298R298delAGA---11B.1.177.150.000631
ORF1ab/nsp5A-B298R298GAgaGga11B.1.177.160.000664
ORF1ab/nsp5A-B298R298GAgaGga11B.1.177.200.001517
ORF1ab/nsp5A-B298R298delAGA---11B.1.177.40.000211
ORF1ab/nsp5A-B298R298KaGaaAa11B.1.177.60.000977
ORF1ab/nsp5A-B298R298KaGaaAa11B.1.177.810.000189
ORF1ab/nsp5A-B298R298SagAagC11B.1.20.000009
ORF1ab/nsp5A-B298R298del1Aga-ga11B.1.20.000009
ORF1ab/nsp5A-B298R298GAgaGga11B.1.20.000009
ORF1ab/nsp5A-B298R298KaGaaAa11B.1.20.000009
ORF1ab/nsp5A-B298R298delAGA---11B.1.2100.002132
ORF1ab/nsp5A-B298R298RagAagG11B.1.2340.000132
ORF1ab/nsp5A-B298R298RagAagG11B.1.2430.00007
ORF1ab/nsp5A-B298R298IaGaaTa11B.1.2430.00007
ORF1ab/nsp5A-B298R298GAgaGga11B.1.2580.000067
ORF1ab/nsp5A-B298R298SagAagC11B.1.2580.000067
ORF1ab/nsp5A-B298R298GAgaGga11B.1.258.170.000104
ORF1ab/nsp5A-B298R298SagAagC11B.1.258.170.000104
ORF1ab/nsp5A-B298R298TaGaaCa11B.1.3110.000275
ORF1ab/nsp5A-B298R298KaGaaAa11B.1.3510.00003
ORF1ab/nsp5A-B298R298QAGaCAa11B.1.3510.00003
ORF1ab/nsp5A-B298R298RAgaCga11B.1.3510.00003
ORF1ab/nsp5A-B298R298GAgaGga11B.1.351.30.000876
ORF1ab/nsp5A-B298R298IaGaaTa11B.1.360.000146
ORF1ab/nsp5A-B298R298KaGaaAa11B.1.4270.00005
ORF1ab/nsp5A-B298R298IaGaaTa11B.1.4290.000024
ORF1ab/nsp5A-B298R298RagAagG11B.1.5010.007353
ORF1ab/nsp5A-B298R298SagAagT11B.1.5090.000866
ORF1ab/nsp5A-B298R298RagAagG11B.1.5300.007143
ORF1ab/nsp5A-B298R298del1Aga-ga11B.1.5330.009615
ORF1ab/nsp5A-B298R298GAgaGga11B.1.5610.000397
ORF1ab/nsp5A-B298R298IaGaaTa11B.1.5640.000426
ORF1ab/nsp5A-B298R298IaGaaTa11B.1.5770.000687
ORF1ab/nsp5A-B298R298del1Aga-ga11B.1.5960.000087
ORF1ab/nsp5A-B298R298RagAagG11B.1.5960.000087
ORF1ab/nsp5A-B298R298SagAagC11B.1.5960.000087
ORF1ab/nsp5A-B298R298KaGaaAa11B.1.617.10.000129
ORF1ab/nsp5A-B298R298delAGA---11B.1.617.20.000004
ORF1ab/nsp5A-B298R298KaGaaAa11B.1.621.10.000506
ORF1ab/nsp5A-B298R298SagAagC11B.1.6280.000352
ORF1ab/nsp5A-B298R298XAgaTga11B.1.6370.000073
ORF1ab/nsp5A-B298R298KaGaaAa11B.6.60.000889
ORF1ab/nsp5A-B298R298KaGaaAa11D.20.000075
ORF1ab/nsp5A-B298R298RagAagG11D.20.000075
ORF1ab/nsp5A-B298R298IaGaaTa11L.10.001905
ORF1ab/nsp5A-B298R298delAGA---11N.40.004255
ORF1ab/nsp5A-B298R298KaGaaAa11P.30.001595
ORF1ab/nsp5A-B298R298RagAagG11Q.30.000145
ORF1ab/nsp5A-B298R298KaGaaAa11Q.80.000165