CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 28 | N28N | N3291N | syn | aaC | aaT | 12668 | 12668 | 1 | 10136-10138 |
ORF1ab/nsp5A-B | 28 | N28del | N3291del | del | AAC | --- | 41 | 41 | 1 | 10136-10138 |
ORF1ab/nsp5A-B | 28 | N28S | N3291S | nonsyn | aAc | aGc | 4 | 4 | 1 | 10136-10138 |
ORF1ab/nsp5A-B | 28 | N28K | N3291K | nonsyn | aaC | aaA | 4 | 3 | 0.75 | 10136-10138 |
ORF1ab/nsp5A-B | 28 | N28K | N3291K | nonsyn | aaC | aaG | 4 | 1 | 0.25 | 10136-10138 |
ORF1ab/nsp5A-B | 28 | N28I | N3291I | nonsyn | aAc | aTc | 2 | 2 | 1 | 10136-10138 |
ORF1ab/nsp5A-B | 28 | N28del1 | N3291del1 | del | Aac | -ac | 1 | 1 | 1 | 10136-10138 |
ORF1ab/nsp5A-B | 28 | N28Y | N3291Y | nonsyn | Aac | Tac | 1 | 1 | 1 | 10136-10138 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 12668 | 12668 | All | 0.002423 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2197 | 2197 | B.1.1.7 | 0.001967 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1045 | 1045 | B.1.2 | 0.009202 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 884 | 884 | B.1.36 | 0.128976 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 605 | 605 | AY.4 | 0.000942 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 571 | 571 | B.1.617.2 | 0.00215 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 380 | 380 | B.1.351 | 0.011296 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 378 | 378 | AY.4.2 | 0.008198 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 348 | 348 | A.21 | 0.963989 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 329 | 329 | AY.3 | 0.003272 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 290 | 290 | AY.20 | 0.011271 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 261 | 261 | AY.25 | 0.00157 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 212 | 212 | B.1.258 | 0.014108 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 208 | 208 | AY.43 | 0.000922 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 199 | 199 | B.1 | 0.001823 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 197 | 197 | B.1.177 | 0.002594 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 183 | 183 | AY.102 | 0.004852 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 180 | 180 | AY.44 | 0.001096 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 173 | 173 | B.1.1.318 | 0.052203 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 153 | 153 | AY.103 | 0.00095 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 144 | 144 | AY.5 | 0.002973 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 134 | 134 | P.1 | 0.002111 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 132 | 132 | AY.98.1 | 0.006393 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 122 | 122 | B.1.544 | 0.73494 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 116 | 116 | B.1.1 | 0.002104 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 111 | 111 | B.1.1.519 | 0.004408 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 106 | 106 | AY.47 | 0.003297 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 94 | 94 | B.1.525 | 0.010637 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 90 | 90 | B.1.429 | 0.002118 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 88 | 88 | B.1.369 | 0.0251 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 87 | 87 | B.1.595 | 0.022704 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 86 | 86 | B.1.177.83 | 0.127407 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 84 | 84 | B.1.177.7 | 0.013848 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 83 | 83 | B.1.456 | 0.271242 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 81 | 81 | AY.58 | 0.073503 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 80 | 80 | AY.39 | 0.001977 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 79 | 79 | AY.26 | 0.002237 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 76 | 76 | AY.119 | 0.002683 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 61 | 61 | B.1.427 | 0.00308 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 56 | 56 | B.1.466.2 | 0.021909 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 52 | 52 | B.1.526 | 0.001222 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 49 | 49 | B.1.596 | 0.00427 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 47 | 47 | C.36.3 | 0.026659 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 45 | 45 | B.1.243 | 0.003131 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 44 | 44 | B.1.637 | 0.003215 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 41 | 41 | All | 0.000008 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 39 | 39 | B.1.1.25 | 0.022172 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 39 | 39 | B.1.160 | 0.001216 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 33 | 33 | B.1.1.37 | 0.006365 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 32 | 32 | AY.121 | 0.00433 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 32 | 32 | P.1.15 | 0.007435 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 31 | 31 | AY.29 | 0.000489 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 29 | 29 | AY.23 | 0.002023 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 28 | 28 | AY.117 | 0.002366 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 28 | 28 | B.1.177.60 | 0.006116 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 28 | 28 | B.1.177.81 | 0.005301 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 26 | 26 | AY.100 | 0.001196 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 25 | 25 | P.1.14 | 0.001195 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 24 | 24 | B.1.235 | 0.060453 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 24 | 24 | B.1.617.1 | 0.003095 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 24 | 24 | Q.8 | 0.003958 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 23 | 23 | AY.9.2 | 0.000845 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 21 | 21 | AY.46.4 | 0.003455 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 19 | 19 | AY.118 | 0.00119 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 19 | 19 | B.1.1.159 | 0.088785 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 19 | 19 | B.1.1.176 | 0.008348 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 18 | 18 | AY.78 | 0.027735 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 18 | 18 | B.1.234 | 0.002375 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 17 | 17 | AY.4.2.1 | 0.002533 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 17 | 17 | B.1.1.291 | 0.012621 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 17 | 17 | P.1.4 | 0.016602 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 16 | 16 | AY.14 | 0.001408 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 16 | 16 | AY.39.1 | 0.000634 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 16 | 16 | AY.75 | 0.000896 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 16 | 16 | B.1.36.29 | 0.008277 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 16 | 16 | B.1.619 | 0.013937 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 16 | 16 | B.1.633 | 0.666667 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 15 | 15 | B.1.1.63 | 0.005787 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 14 | 14 | AY.98 | 0.001106 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 13 | 13 | AY.36 | 0.001927 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 13 | 13 | AY.5.3 | 0.004386 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 13 | 13 | B.1.1.284 | 0.001396 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 13 | 13 | B.1.1.317 | 0.005352 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 13 | 13 | B.1.1.434 | 0.004531 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 13 | 13 | B.1.438.1 | 0.001394 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 13 | 13 | B.1.469 | 0.046931 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 12 | 12 | AY.61 | 0.001257 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 12 | 12 | AY.75.1 | 0.002164 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 12 | 12 | AY.88 | 0.01061 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 12 | 12 | AY.9 | 0.000811 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 12 | 12 | AY.99.2 | 0.001106 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 12 | 12 | B.1.1.214 | 0.000665 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 12 | 12 | B.1.221 | 0.000852 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 12 | 12 | B.1.561 | 0.004764 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 11 | 11 | B | 0.001406 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 11 | 11 | R.1 | 0.00099 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 10 | 10 | AY.109 | 0.007396 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 10 | 10 | AY.59 | 0.005297 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 10 | 10 | B.1.36.1 | 0.011403 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 10 | 10 | P.2 | 0.001866 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 10 | 10 | Q.1 | 0.001263 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 10 | 10 | Q.3 | 0.00145 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 9 | 9 | AF.1 | 0.333333 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 9 | 9 | Q.7 | 0.01 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 8 | 8 | AY.69 | 0.001493 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 8 | 8 | B.1.409 | 0.00625 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 8 | 8 | C.36 | 0.007286 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | A.7 | 0.388889 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | AY.46.5 | 0.001389 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | B.1.177.57 | 0.001967 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | B.1.311 | 0.001922 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | B.1.609 | 0.003356 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 7 | 7 | N.2 | 0.269231 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 6 | 6 | A.23.1 | 0.004225 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 6 | 6 | B.1.1.316 | 0.00555 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 6 | 6 | B.1.468 | 0.034286 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 6 | 6 | B.1.628 | 0.002114 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | AY.34.1 | 0.00255 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | AY.81 | 0.00996 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | AY.83 | 0.008621 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | AY.93 | 0.001365 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | B.1.177.58 | 0.006658 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | B.1.366 | 0.02439 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 5 | 5 | B.1.564 | 0.002129 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | A | 0.001548 |
ORF1ab/nsp5A-B | 28 | N28S | aAc | aGc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 28 | N28K | aaC | aaA | 3 | 4 | All | 0.000001 |
ORF1ab/nsp5A-B | 28 | N28K | aaC | aaG | 1 | 4 | All | 0 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.1.1.240 | 0.018779 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.1.1.344 | 0.043011 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.1.36.31 | 0.007005 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.1.436 | 0.004115 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.1.623 | 0.002146 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | B.3 | 0.003322 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | C.1 | 0.009569 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | AY.4.3 | 0.002525 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | AY.72 | 0.004082 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.1.135 | 0.014085 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.1.220 | 0.005576 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.1.67 | 0.013699 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.177.54 | 0.001819 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.210 | 0.006397 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.36.16 | 0.004274 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.538 | 0.024194 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | B.4.2 | 0.2 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | N.4 | 0.012766 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 3 | 3 | P.1.6 | 0.005837 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp5A-B | 28 | N28I | aAc | aTc | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AM.4 | 0.007143 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AU.1 | 0.002532 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.1.128 | 0.014184 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.120 | 0.015385 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.177.11 | 0.003396 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.177.72 | 0.00678 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp5A-B | 28 | N28S | aAc | aGc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.408 | 0.00738 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.480 | 0.004975 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AA.2 | 0.007692 |
ORF1ab/nsp5A-B | 28 | N28Y | Aac | Tac | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 28 | N28del1 | Aac | -ac | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp5A-B | 28 | N28K | aaC | aaA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp5A-B | 28 | N28del1 | Aac | -ac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp5A-B | 28 | N28Y | Aac | Tac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 28 | N28S | aAc | aGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.144 | 0.028571 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.166 | 0.033333 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp5A-B | 28 | N28K | aaC | aaA | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.209 | 0.008929 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.213 | 0.021739 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.514 | 0.038462 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp5A-B | 28 | N28S | aAc | aGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp5A-B | 28 | N28I | aAc | aTc | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.194 | 0.04 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.351.1 | 0.038462 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.357 | 0.009524 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp5A-B | 28 | N28K | aaC | aaG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.478 | 0.011765 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp5A-B | 28 | N28K | aaC | aaA | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp5A-B | 28 | N28I | aAc | aTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp5A-B | 28 | N28del | AAC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp5A-B | 28 | N28N | aaC | aaT | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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