CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp5A-B : CodonNum = 278

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp5A-B278G278RG3541RnonsynGgaAga4774670.97903610886-10888
ORF1ab/nsp5A-B278G278RG3541RnonsynGgaCga477100.020964410886-10888
ORF1ab/nsp5A-B278G278GG3541GsynggAggG1831130.61748610886-10888
ORF1ab/nsp5A-B278G278GG3541GsynggAggC183560.30601110886-10888
ORF1ab/nsp5A-B278G278GG3541GsynggAggT183140.076502710886-10888
ORF1ab/nsp5A-B278G278EG3541EnonsyngGagAa8989110886-10888
ORF1ab/nsp5A-B278G278delG3541deldelGGA---6262110886-10888
ORF1ab/nsp5A-B278G278VG3541VnonsyngGagTa51500.98039210886-10888
ORF1ab/nsp5A-B278G278VG3541VnonsyngGAgTT5110.019607810886-10888
ORF1ab/nsp5A-B278G278XG3541XnonsynGgaTga4343110886-10888
ORF1ab/nsp5A-B278G278AG3541AnonsyngGagCa1010110886-10888
ORF1ab/nsp5A-B278G278del1G3541del1delGga-ga540.810886-10888
ORF1ab/nsp5A-B278G278del1G3541del1delGgATg-510.210886-10888
ORF1ab/nsp5A-B278G278KG3541KnonsynGGaAAa33110886-10888
ORF1ab/nsp5A-B278G278CG3541CnonsynGgATgT33110886-10888
ORF1ab/nsp5A-B278G278IG3541InonsynGGAATT210.510886-10888
ORF1ab/nsp5A-B278G278IG3541InonsynGGaATa210.510886-10888
ORF1ab/nsp5A-B278G278del2G3541del2delGGa--a11110886-10888
ORF1ab/nsp5A-B278G278NG3541NnonsynGGAAAT11110886-10888
ORF1ab/nsp5A-B278G278PG3541PnonsynGGaCCa11110886-10888
ORF1ab/nsp5A-B278G278HG3541HnonsynGGACAC11110886-10888
ORF1ab/nsp5A-B278G278SG3541SnonsynGgAAgT11110886-10888

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp5A-B278G278RGgaAga467477All0.000089
ORF1ab/nsp5A-B278G278RGgaCga10477All0.000002
ORF1ab/nsp5A-B278G278RGgaAga340340B.1.1.3030.939227
ORF1ab/nsp5A-B278G278GggAggG113183All0.000022
ORF1ab/nsp5A-B278G278GggAggC56183All0.000011
ORF1ab/nsp5A-B278G278GggAggT14183All0.000003
ORF1ab/nsp5A-B278G278EgGagAa8989All0.000017
ORF1ab/nsp5A-B278G278delGGA---6262All0.000012
ORF1ab/nsp5A-B278G278VgGagTa5051All0.00001
ORF1ab/nsp5A-B278G278VgGAgTT151All0
ORF1ab/nsp5A-B278G278GggAggC3148B.1.1.70.000028
ORF1ab/nsp5A-B278G278GggAggG1748B.1.1.70.000015
ORF1ab/nsp5A-B278G278XGgaTga4343All0.000008
ORF1ab/nsp5A-B278G278EgGagAa3838B.1.1.70.000034
ORF1ab/nsp5A-B278G278GggAggG2727AY.530.007763
ORF1ab/nsp5A-B278G278RGgaAga2525B.1.2430.00174
ORF1ab/nsp5A-B278G278RGgaAga2324AY.30.000229
ORF1ab/nsp5A-B278G278RGgaCga124AY.30.00001
ORF1ab/nsp5A-B278G278delGGA---1616B.1.1.70.000014
ORF1ab/nsp5A-B278G278RGgaAga1414B.10.000128
ORF1ab/nsp5A-B278G278RGgaAga1214B.1.1.70.000011
ORF1ab/nsp5A-B278G278RGgaCga214B.1.1.70.000002
ORF1ab/nsp5A-B278G278GggAggT712AY.440.000043
ORF1ab/nsp5A-B278G278GggAggG512AY.440.00003
ORF1ab/nsp5A-B278G278EgGagAa1212B.1.1770.000158
ORF1ab/nsp5A-B278G278AgGagCa1010All0.000002
ORF1ab/nsp5A-B278G278GggAggG1010B.1.1770.000132
ORF1ab/nsp5A-B278G278VgGagTa99B.10.000082
ORF1ab/nsp5A-B278G278XGgaTga88AY.40.000012
ORF1ab/nsp5A-B278G278GggAggG88AY.430.000035
ORF1ab/nsp5A-B278G278GggAggC68B.1.617.20.000023
ORF1ab/nsp5A-B278G278GggAggT18B.1.617.20.000004
ORF1ab/nsp5A-B278G278GggAggG18B.1.617.20.000004
ORF1ab/nsp5A-B278G278RGgaAga67AY.40.000009
ORF1ab/nsp5A-B278G278GggAggC47AY.40.000006
ORF1ab/nsp5A-B278G278GggAggG37AY.40.000005
ORF1ab/nsp5A-B278G278RGgaCga17AY.40.000002
ORF1ab/nsp5A-B278G278GggAggG66AY.1030.000037
ORF1ab/nsp5A-B278G278delGGA---66AY.250.000036
ORF1ab/nsp5A-B278G278XGgaTga66B.10.000055
ORF1ab/nsp5A-B278G278RGgaAga66B.1.10.000109
ORF1ab/nsp5A-B278G278VgGagTa66B.1.1.70.000005
ORF1ab/nsp5A-B278G278RGgaAga66B.1.20.000053
ORF1ab/nsp5A-B278G278GggAggG36B.1.20.000026
ORF1ab/nsp5A-B278G278GggAggT36B.1.20.000026
ORF1ab/nsp5A-B278G278EgGagAa66B.1.2580.000399
ORF1ab/nsp5A-B278G278del1Gga-ga45All0.000001
ORF1ab/nsp5A-B278G278del1GgATg-15All0
ORF1ab/nsp5A-B278G278delGGA---55AY.40.000008
ORF1ab/nsp5A-B278G278XGgaTga440.222222
ORF1ab/nsp5A-B278G278VgGagTa44AY.40.000006
ORF1ab/nsp5A-B278G278GggAggG44B.1.1.250.002274
ORF1ab/nsp5A-B278G278XGgaTga44B.1.1.70.000004
ORF1ab/nsp5A-B278G278RGgaAga44B.1.177.70.000659
ORF1ab/nsp5A-B278G278KGGaAAa33All0.000001
ORF1ab/nsp5A-B278G278CGgATgT33All0.000001
ORF1ab/nsp5A-B278G278RGgaAga33AY.1080.003308
ORF1ab/nsp5A-B278G278EgGagAa33AY.40.000005
ORF1ab/nsp5A-B278G278delGGA---33AY.4.50.000322
ORF1ab/nsp5A-B278G278XGgaTga33AY.430.000013
ORF1ab/nsp5A-B278G278VgGagTa33AY.440.000018
ORF1ab/nsp5A-B278G278RGgaAga33B.1.1.630.001157
ORF1ab/nsp5A-B278G278AgGagCa33B.1.1.70.000003
ORF1ab/nsp5A-B278G278delGGA---33B.1.1600.000094
ORF1ab/nsp5A-B278G278VgGagTa33B.1.1770.00004
ORF1ab/nsp5A-B278G278VgGagTa23B.1.20.000018
ORF1ab/nsp5A-B278G278VgGAgTT13B.1.20.000009
ORF1ab/nsp5A-B278G278RGgaCga220.111111
ORF1ab/nsp5A-B278G278delGGA---220.111111
ORF1ab/nsp5A-B278G278CGgATgT220.111111
ORF1ab/nsp5A-B278G278IGGAATT12All0
ORF1ab/nsp5A-B278G278IGGaATa12All0
ORF1ab/nsp5A-B278G278GggAggC22AY.1000.000092
ORF1ab/nsp5A-B278G278GggAggC22AY.1020.000053
ORF1ab/nsp5A-B278G278EgGagAa22AY.1050.001286
ORF1ab/nsp5A-B278G278GggAggG22AY.140.000176
ORF1ab/nsp5A-B278G278GggAggG22AY.23.10.000835
ORF1ab/nsp5A-B278G278RGgaAga22AY.250.000012
ORF1ab/nsp5A-B278G278GggAggG22AY.250.000012
ORF1ab/nsp5A-B278G278EgGagAa22AY.270.000129
ORF1ab/nsp5A-B278G278EgGagAa22AY.30.00002
ORF1ab/nsp5A-B278G278AgGagCa22AY.40.000003
ORF1ab/nsp5A-B278G278delGGA---22AY.430.000009
ORF1ab/nsp5A-B278G278GggAggC12AY.880.000884
ORF1ab/nsp5A-B278G278GggAggG12AY.880.000884
ORF1ab/nsp5A-B278G278GggAggT12AY.90.000068
ORF1ab/nsp5A-B278G278GggAggG12AY.90.000068
ORF1ab/nsp5A-B278G278VgGagTa22B0.000256
ORF1ab/nsp5A-B278G278delGGA---22B.10.000018
ORF1ab/nsp5A-B278G278XGgaTga22B.1.10.000036
ORF1ab/nsp5A-B278G278VgGagTa22B.1.10.000036
ORF1ab/nsp5A-B278G278EgGagAa22B.1.10.000036
ORF1ab/nsp5A-B278G278RGgaAga22B.1.1.1590.009346
ORF1ab/nsp5A-B278G278GggAggG22B.1.1.280.000622
ORF1ab/nsp5A-B278G278RGgaAga22B.1.1.3330.002153
ORF1ab/nsp5A-B278G278GggAggG22B.1.1600.000062
ORF1ab/nsp5A-B278G278EgGagAa22B.1.1640.029851
ORF1ab/nsp5A-B278G278delGGA---22B.1.1770.000026
ORF1ab/nsp5A-B278G278RGgaAga22B.1.1770.000026
ORF1ab/nsp5A-B278G278GggAggC22B.1.177.750.002081
ORF1ab/nsp5A-B278G278XGgaTga22B.1.20.000018
ORF1ab/nsp5A-B278G278IGGAATT12B.1.20.000009
ORF1ab/nsp5A-B278G278IGGaATa12B.1.20.000009
ORF1ab/nsp5A-B278G278VgGagTa22B.1.2580.000133
ORF1ab/nsp5A-B278G278KGGaAAa22B.1.258.170.000208
ORF1ab/nsp5A-B278G278XGgaTga22B.1.3510.000059
ORF1ab/nsp5A-B278G278VgGagTa22B.1.3960.001411
ORF1ab/nsp5A-B278G278RGgaAga12B.1.4270.00005
ORF1ab/nsp5A-B278G278RGgaCga12B.1.4270.00005
ORF1ab/nsp5A-B278G278GggAggG22B.1.5260.000047
ORF1ab/nsp5A-B278G278GggAggG22B.1.5960.000174
ORF1ab/nsp5A-B278G278EgGagAa22B.1.617.10.000258
ORF1ab/nsp5A-B278G278RGgaAga22B.1.617.20.000008
ORF1ab/nsp5A-B278G278VgGagTa22D.20.00015
ORF1ab/nsp5A-B278G278RGgaAga22D.20.00015
ORF1ab/nsp5A-B278G278EgGagAa22P.10.000032
ORF1ab/nsp5A-B278G278GggAggC22P.20.000373
ORF1ab/nsp5A-B278G278EgGagAa11A.2.20.001689
ORF1ab/nsp5A-B278G278GggAggC11AD.20.000219
ORF1ab/nsp5A-B278G278PGGaCCa11All0
ORF1ab/nsp5A-B278G278NGGAAAT11All0
ORF1ab/nsp5A-B278G278del2GGa--a11All0
ORF1ab/nsp5A-B278G278SGgAAgT11All0
ORF1ab/nsp5A-B278G278HGGACAC11All0
ORF1ab/nsp5A-B278G278EgGagAa11AM.40.003571
ORF1ab/nsp5A-B278G278RGgaAga11AY.1020.000027
ORF1ab/nsp5A-B278G278EgGagAa11AY.1020.000027
ORF1ab/nsp5A-B278G278RGgaAga11AY.140.000088
ORF1ab/nsp5A-B278G278PGGaCCa11AY.250.000006
ORF1ab/nsp5A-B278G278XGgaTga11AY.250.000006
ORF1ab/nsp5A-B278G278EgGagAa11AY.250.000006
ORF1ab/nsp5A-B278G278RGgaAga11AY.270.000065
ORF1ab/nsp5A-B278G278GggAggG11AY.290.000016
ORF1ab/nsp5A-B278G278RGgaAga11AY.290.000016
ORF1ab/nsp5A-B278G278del1GgATg-11AY.40.000002
ORF1ab/nsp5A-B278G278AgGagCa11AY.4.2.10.000149
ORF1ab/nsp5A-B278G278RGgaCga11AY.430.000004
ORF1ab/nsp5A-B278G278NGGAAAT11AY.440.000006
ORF1ab/nsp5A-B278G278delGGA---11AY.440.000006
ORF1ab/nsp5A-B278G278del2GGa--a11AY.440.000006
ORF1ab/nsp5A-B278G278XGgaTga11AY.46.50.000198
ORF1ab/nsp5A-B278G278VgGagTa11AY.50.000021
ORF1ab/nsp5A-B278G278CGgATgT11AY.5.30.000337
ORF1ab/nsp5A-B278G278GggAggC11AY.5.30.000337
ORF1ab/nsp5A-B278G278delGGA---11AY.540.000095
ORF1ab/nsp5A-B278G278RGgaAga11AY.60.000041
ORF1ab/nsp5A-B278G278GggAggG11AY.610.000105
ORF1ab/nsp5A-B278G278delGGA---11AY.660.00107
ORF1ab/nsp5A-B278G278delGGA---11AY.670.000464
ORF1ab/nsp5A-B278G278GggAggG11AY.750.000056
ORF1ab/nsp5A-B278G278XGgaTga11AY.870.000833
ORF1ab/nsp5A-B278G278delGGA---11AY.90.000068
ORF1ab/nsp5A-B278G278EgGagAa11AY.980.000079
ORF1ab/nsp5A-B278G278XGgaTga11AY.98.10.000048
ORF1ab/nsp5A-B278G278delGGA---11B0.000128
ORF1ab/nsp5A-B278G278GggAggC11B.10.000009
ORF1ab/nsp5A-B278G278delGGA---11B.1.10.000018
ORF1ab/nsp5A-B278G278AgGagCa11B.1.10.000018
ORF1ab/nsp5A-B278G278RGgaAga11B.1.1.1170.009709
ORF1ab/nsp5A-B278G278delGGA---11B.1.1.1590.004673
ORF1ab/nsp5A-B278G278EgGagAa11B.1.1.2160.00089
ORF1ab/nsp5A-B278G278RGgaAga11B.1.1.280.000311
ORF1ab/nsp5A-B278G278EgGagAa11B.1.1.2980.000862
ORF1ab/nsp5A-B278G278delGGA---11B.1.1.3060.000438
ORF1ab/nsp5A-B278G278XGgaTga11B.1.1.3070.002532
ORF1ab/nsp5A-B278G278delGGA---11B.1.1.3110.000358
ORF1ab/nsp5A-B278G278EgGagAa11B.1.1.330.000421
ORF1ab/nsp5A-B278G278RGgaCga11B.1.1.370.000193
ORF1ab/nsp5A-B278G278GggAggG11B.1.1.3940.02439
ORF1ab/nsp5A-B278G278delGGA---11B.1.1.4090.002833
ORF1ab/nsp5A-B278G278RGgaAga11B.1.1.4200.001006
ORF1ab/nsp5A-B278G278RGgaAga11B.1.1.4310.016129
ORF1ab/nsp5A-B278G278XGgaTga11B.1.1.5070.008696
ORF1ab/nsp5A-B278G278GggAggC11B.1.1.5170.006803
ORF1ab/nsp5A-B278G278GggAggG11B.1.1.5190.00004
ORF1ab/nsp5A-B278G278HGGACAC11B.1.1.70.000001
ORF1ab/nsp5A-B278G278GggAggG11B.1.1280.000635
ORF1ab/nsp5A-B278G278EgGagAa11B.1.1600.000031
ORF1ab/nsp5A-B278G278VgGagTa11B.1.1600.000031
ORF1ab/nsp5A-B278G278XGgaTga11B.1.160.160.000929
ORF1ab/nsp5A-B278G278XGgaTga11B.1.1770.000013
ORF1ab/nsp5A-B278G278AgGagCa11B.1.1770.000013
ORF1ab/nsp5A-B278G278del1Gga-ga11B.1.1770.000013
ORF1ab/nsp5A-B278G278delGGA---11B.1.177.150.000631
ORF1ab/nsp5A-B278G278delGGA---11B.1.177.160.000664
ORF1ab/nsp5A-B278G278delGGA---11B.1.177.40.000211
ORF1ab/nsp5A-B278G278delGGA---11B.1.177.60.000977
ORF1ab/nsp5A-B278G278GggAggG11B.1.177.600.000218
ORF1ab/nsp5A-B278G278GggAggC11B.1.177.730.000566
ORF1ab/nsp5A-B278G278RGgaCga11B.1.177.80.000752
ORF1ab/nsp5A-B278G278EgGagAa11B.1.177.810.000189
ORF1ab/nsp5A-B278G278XGgaTga11B.1.177.860.000183
ORF1ab/nsp5A-B278G278SGgAAgT11B.1.20.000009
ORF1ab/nsp5A-B278G278delGGA---11B.1.2100.002132
ORF1ab/nsp5A-B278G278GggAggG11B.1.2340.000132
ORF1ab/nsp5A-B278G278GggAggG11B.1.2400.000216
ORF1ab/nsp5A-B278G278del1Gga-ga11B.1.2430.00007
ORF1ab/nsp5A-B278G278VgGagTa11B.1.2430.00007
ORF1ab/nsp5A-B278G278delGGA---11B.1.2580.000067
ORF1ab/nsp5A-B278G278VgGagTa11B.1.258.170.000104
ORF1ab/nsp5A-B278G278AgGagCa11B.1.258.170.000104
ORF1ab/nsp5A-B278G278VgGagTa11B.1.3380.008621
ORF1ab/nsp5A-B278G278VgGagTa11B.1.3510.00003
ORF1ab/nsp5A-B278G278RGgaAga11B.1.351.50.0006
ORF1ab/nsp5A-B278G278EgGagAa11B.1.360.000146
ORF1ab/nsp5A-B278G278VgGagTa11B.1.36.100.004785
ORF1ab/nsp5A-B278G278delGGA---11B.1.36.170.000494
ORF1ab/nsp5A-B278G278RGgaAga11B.1.4220.000812
ORF1ab/nsp5A-B278G278VgGagTa11B.1.4270.00005
ORF1ab/nsp5A-B278G278VgGagTa11B.1.438.10.000107
ORF1ab/nsp5A-B278G278EgGagAa11B.1.5260.000024
ORF1ab/nsp5A-B278G278VgGagTa11B.1.5260.000024
ORF1ab/nsp5A-B278G278RGgaAga11B.1.5260.000024
ORF1ab/nsp5A-B278G278GggAggG11B.1.5610.000397
ORF1ab/nsp5A-B278G278GggAggT11B.1.5950.000261
ORF1ab/nsp5A-B278G278del1Gga-ga11B.1.5960.000087
ORF1ab/nsp5A-B278G278VgGagTa11B.1.5960.000087
ORF1ab/nsp5A-B278G278XGgaTga11B.1.5960.000087
ORF1ab/nsp5A-B278G278VgGagTa11B.1.6090.000479
ORF1ab/nsp5A-B278G278del1Gga-ga11B.1.617.10.000129
ORF1ab/nsp5A-B278G278KGGaAAa11B.1.617.20.000004
ORF1ab/nsp5A-B278G278delGGA---11B.1.617.20.000004
ORF1ab/nsp5A-B278G278VgGagTa11B.1.617.20.000004
ORF1ab/nsp5A-B278G278AgGagCa11B.1.6370.000073
ORF1ab/nsp5A-B278G278EgGagAa11B.400.000364
ORF1ab/nsp5A-B278G278GggAggG11B.60.00091
ORF1ab/nsp5A-B278G278GggAggG11C.40.01
ORF1ab/nsp5A-B278G278XGgaTga11D.20.000075
ORF1ab/nsp5A-B278G278GggAggT11D.20.000075
ORF1ab/nsp5A-B278G278delGGA---11N.40.004255
ORF1ab/nsp5A-B278G278EgGagAa11P.1.10.000318
ORF1ab/nsp5A-B278G278XGgaTga11P.1.140.000048
ORF1ab/nsp5A-B278G278GggAggG11P.1.140.000048
ORF1ab/nsp5A-B278G278delGGA---11Q.20.000613
ORF1ab/nsp5A-B278G278EgGagAa11Q.80.000165
ORF1ab/nsp5A-B278G278EgGagAa11R.10.00009
ORF1ab/nsp5A-B278G278GggAggC11W.40.001351