CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp5A-B | 276 | M276V | M3539V | nonsyn | Atg | Gtg | 573 | 573 | 1 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276L | M3539L | nonsyn | Atg | Ctg | 329 | 264 | 0.802432 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276L | M3539L | nonsyn | Atg | Ttg | 329 | 39 | 0.118541 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276L | M3539L | nonsyn | AtG | CtA | 329 | 26 | 0.0790274 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276I | M3539I | nonsyn | atG | atT | 291 | 221 | 0.75945 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276I | M3539I | nonsyn | atG | atA | 291 | 55 | 0.189003 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276I | M3539I | nonsyn | atG | atC | 291 | 15 | 0.0515464 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276T | M3539T | nonsyn | aTg | aCg | 261 | 259 | 0.992337 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276T | M3539T | nonsyn | aTG | aCT | 261 | 2 | 0.00766284 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276del | M3539del | del | ATG | --- | 49 | 49 | 1 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276R | M3539R | nonsyn | aTg | aGg | 8 | 8 | 1 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276del2 | M3539del2 | del | aTG | a-- | 7 | 4 | 0.571429 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276del2 | M3539del2 | del | ATg | --g | 7 | 3 | 0.428571 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276K | M3539K | nonsyn | aTg | aAg | 2 | 2 | 1 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276del1 | M3539del1 | del | Atg | -tg | 2 | 2 | 1 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276N | M3539N | nonsyn | aTG | aAT | 2 | 2 | 1 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276A | M3539A | nonsyn | ATg | GCg | 1 | 1 | 1 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276G | M3539G | nonsyn | ATG | GGT | 1 | 1 | 1 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276Y | M3539Y | nonsyn | ATG | TAT | 1 | 1 | 1 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276X | M3539X | nonsyn | ATg | TAg | 1 | 1 | 1 | 10880-10882 |
ORF1ab/nsp5A-B | 276 | M276F | M3539F | nonsyn | AtG | TtT | 1 | 1 | 1 | 10880-10882 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 573 | 573 | All | 0.00011 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 264 | 329 | All | 0.00005 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 39 | 329 | All | 0.000007 |
ORF1ab/nsp5A-B | 276 | M276L | AtG | CtA | 26 | 329 | All | 0.000005 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 221 | 291 | All | 0.000042 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 55 | 291 | All | 0.000011 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atC | 15 | 291 | All | 0.000003 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 249 | 277 | B.1.1.7 | 0.000223 |
ORF1ab/nsp5A-B | 276 | M276L | AtG | CtA | 26 | 277 | B.1.1.7 | 0.000023 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 2 | 277 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 259 | 261 | All | 0.00005 |
ORF1ab/nsp5A-B | 276 | M276T | aTG | aCT | 2 | 261 | All | 0 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 109 | 109 | B.1.1.187 | 0.964602 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 96 | 96 | B.1.369 | 0.027382 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 83 | 83 | AY.25 | 0.000499 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 79 | 79 | AY.103 | 0.000491 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 71 | 71 | AY.4 | 0.000111 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 49 | 49 | All | 0.000009 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 41 | 45 | B.1 | 0.000376 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 4 | 45 | B.1 | 0.000037 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 38 | 38 | B.1 | 0.000348 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 34 | 34 | AY.43 | 0.000151 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 25 | 33 | B.1.1.7 | 0.000022 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 6 | 33 | B.1.1.7 | 0.000005 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atC | 2 | 33 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 26 | 26 | B.1.1.216 | 0.023152 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 25 | 25 | B.1.517 | 0.010675 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 16 | 24 | AY.4 | 0.000025 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atC | 6 | 24 | AY.4 | 0.000009 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 2 | 24 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 18 | 19 | B.1.177 | 0.000237 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 19 | B.1.177 | 0.000013 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 18 | 18 | B.1.243 | 0.001253 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 16 | 16 | B.1.177.81 | 0.003029 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 14 | 14 | B.1.429 | 0.000329 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 11 | 11 | B.1.438.1 | 0.00118 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 8 | 9 | B.1.2 | 0.00007 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atC | 1 | 9 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 9 | 9 | B.1.427 | 0.000454 |
ORF1ab/nsp5A-B | 276 | M276R | aTg | aGg | 8 | 8 | All | 0.000002 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp5A-B | 276 | M276del2 | aTG | a-- | 4 | 7 | All | 0.000001 |
ORF1ab/nsp5A-B | 276 | M276del2 | ATg | --g | 3 | 7 | All | 0.000001 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 5 | 7 | B.1.617.2 | 0.000019 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 7 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atC | 1 | 7 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 6 | 6 | B.1.1.348 | 0.004777 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 5 | 5 | B.1.1.263 | 0.007788 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 3 | 4 | AY.103 | 0.000019 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 4 | AY.103 | 0.000006 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 2 | 4 | B.1.351 | 0.000059 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 2 | 4 | B.1.351 | 0.000059 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp5A-B | 276 | M276R | aTg | aGg | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp5A-B | 276 | M276del2 | ATg | --g | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp5A-B | 276 | M276del2 | aTG | a-- | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 3 | 3 | B.1.214 | 0.010989 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 3 | 3 | B.1.478 | 0.035294 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atC | 1 | 3 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 3 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 3 | B.1.596 | 0.000087 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp5A-B | 276 | M276T | aTG | aCT | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 276 | M276N | aTG | aAT | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 276 | M276K | aTg | aAg | 2 | 2 | 0.111111 | |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp5A-B | 276 | M276del1 | Atg | -tg | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 276 | M276N | aTG | aAT | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 276 | M276K | aTg | aAg | 2 | 2 | All | 0 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atC | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atC | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 2 | 2 | B.1.1.378 | 0.014599 |
ORF1ab/nsp5A-B | 276 | M276R | aTg | aGg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 2 | 2 | B.1.306 | 0.011429 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 2 | 2 | B.1.319 | 0.006098 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 2 | 2 | B.1.438 | 0.013072 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 2 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 2 | B.1.466.2 | 0.000391 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 2 | 2 | B.31 | 0.007463 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 2 | 2 | C.18 | 0.005181 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp5A-B | 276 | M276X | ATg | TAg | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 276 | M276Y | ATG | TAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 276 | M276F | AtG | TtT | 1 | 1 | 0.055556 | |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp5A-B | 276 | M276A | ATg | GCg | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 276 | M276F | AtG | TtT | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 276 | M276Y | ATG | TAT | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 276 | M276G | ATG | GGT | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 276 | M276X | ATg | TAg | 1 | 1 | All | 0 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp5A-B | 276 | M276R | aTg | aGg | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp5A-B | 276 | M276R | aTg | aGg | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp5A-B | 276 | M276A | ATg | GCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 276 | M276G | ATG | GGT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 276 | M276R | aTg | aGg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp5A-B | 276 | M276del2 | aTG | a-- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.1.3 | 0.008696 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 276 | M276del1 | Atg | -tg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.1.382 | 0.035714 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp5A-B | 276 | M276del2 | ATg | --g | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp5A-B | 276 | M276del2 | aTG | a-- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp5A-B | 276 | M276del1 | Atg | -tg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 276 | M276del2 | aTG | a-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ctg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp5A-B | 276 | M276L | Atg | Ttg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp5A-B | 276 | M276del | ATG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp5A-B | 276 | M276I | atG | atT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp5A-B | 276 | M276T | aTg | aCg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp5A-B | 276 | M276V | Atg | Gtg | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|